File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/0601644961670865471711eec9e7d0/.command.log
Size
3.0 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_cfy-T1-TRNA-1_B23WHTKLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/5ac3ef5bb1fb4b74dba39142a3d0a0/659_cfy-T1-TRNA-1_B23WHTKLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-99ebc9bd-f9f1-4b2c-b9a0-02ddaf99f257/75/8438968e551d03cb7cc7a0681df9ae/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/0601644961670865471711eec9e7d0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/0601644961670865471711eec9e7d0/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/a0f43e325e9866f328851adef8ff12/659_cfy-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
FGFR3--TACC3
starfusion
arriba
BCAR3--GLMN
starfusion
arriba
ACTBP6--ACTB
starfusion
DYRK1A--LINC02756
starfusion
arriba
NUS1--AC114501.3
starfusion
ZNF431--RPSAP58
starfusion
UBR5--BAALC-AS1
arriba
TVP23C--CDRT4
arriba
MTAP--DMRTA1
arriba
MTAP--LINC01239
arriba

  0%|          | 0/10 [00:00<?, ?it/s]
Processing FGFR3--TACC3:   0%|          | 0/10 [00:00<?, ?it/s]
Processing FGFR3--TACC3:  10%|█         | 1/10 [00:00<00:00,  9.24it/s]
Processing BCAR3--GLMN:  10%|█         | 1/10 [00:00<00:00,  9.24it/s] 
Processing BCAR3--GLMN:  20%|██        | 2/10 [00:00<00:00,  9.47it/s]
Processing ACTBP6--ACTB:  20%|██        | 2/10 [00:00<00:00,  9.47it/s]
Processing ACTBP6--ACTB:  30%|███       | 3/10 [00:00<00:00,  9.56it/s]
Processing DYRK1A--LINC02756:  30%|███       | 3/10 [00:00<00:00,  9.56it/s]
Processing DYRK1A--LINC02756:  40%|████      | 4/10 [00:00<00:00,  9.59it/s]
Processing NUS1--AC114501.3:  40%|████      | 4/10 [00:00<00:00,  9.59it/s] 
Processing NUS1--AC114501.3:  50%|█████     | 5/10 [00:00<00:00,  9.61it/s]
Processing ZNF431--RPSAP58:  50%|█████     | 5/10 [00:00<00:00,  9.61it/s] 
Processing ZNF431--RPSAP58:  60%|██████    | 6/10 [00:00<00:00,  9.63it/s]
Processing UBR5--BAALC-AS1:  60%|██████    | 6/10 [00:00<00:00,  9.63it/s]
Processing UBR5--BAALC-AS1:  70%|███████   | 7/10 [00:00<00:00,  9.63it/s]
Processing TVP23C--CDRT4:  70%|███████   | 7/10 [00:00<00:00,  9.63it/s]  
Processing TVP23C--CDRT4:  80%|████████  | 8/10 [00:00<00:00,  9.64it/s]
Processing MTAP--DMRTA1:  80%|████████  | 8/10 [00:00<00:00,  9.64it/s] 
Processing MTAP--DMRTA1:  90%|█████████ | 9/10 [00:00<00:00,  9.64it/s]
Processing MTAP--LINC01239:  90%|█████████ | 9/10 [00:00<00:00,  9.64it/s]
Processing MTAP--LINC01239: 100%|██████████| 10/10 [00:01<00:00,  9.64it/s]
Processing MTAP--LINC01239: 100%|██████████| 10/10 [00:01<00:00,  9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory