[W::hts_idx_load3] The index file is older than the data file: 659_ciZ-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	303448293
Known Splicing Events:	300213893
Partial Novel Splicing Events:	1471661
Novel Splicing Events:	1595645
Filtered Splicing Events:	167094

Total splicing  Junctions:	348461
Known Splicing Junctions:	217825
Partial Novel Splicing Junctions:	62815
Novel Splicing Junctions:	67821

===================================================================
Create BED file ...
Create Interact file ...