Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/d20c3fe24b38e29eb0d0406d55ef0e/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/d20c3fe24b38e29eb0d0406d55ef0e/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/b55b988f0db827ef6281c559d1ba3f/659_bTo-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bTo-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bTo-T1-TRNA-1_B23WHTKLT4_1.md.bam --METRICS_FILE 659_bTo-T1-TRNA-1_B23WHTKLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
09:12:23.910 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 09:12:23 GMT 2026] MarkDuplicates --INPUT 659_bTo-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bTo-T1-TRNA-1_B23WHTKLT4_1.md.bam --METRICS_FILE 659_bTo-T1-TRNA-1_B23WHTKLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 09:12:23 GMT 2026] Executing as ?@nf-2bd20c3fe24b38e29eb0d0406d55ef0e-aa850-b95pb on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 09:12:23 MarkDuplicates Start of doWork freeMemory: 105829568; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 09:12:23 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 09:12:23 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 09:12:28 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,045,750
INFO 2026-06-08 09:12:28 MarkDuplicates Tracking 7473 as yet unmatched pairs. 5099 records in RAM.
INFO 2026-06-08 09:12:30 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:1,223,284
INFO 2026-06-08 09:12:30 MarkDuplicates Tracking 5190 as yet unmatched pairs. 598 records in RAM.
INFO 2026-06-08 09:12:32 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 2s. Last read position: chr1:1,700,327
INFO 2026-06-08 09:12:32 MarkDuplicates Tracking 7200 as yet unmatched pairs. 375 records in RAM.
INFO 2026-06-08 09:12:34 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:6,186,681
INFO 2026-06-08 09:12:34 MarkDuplicates Tracking 10665 as yet unmatched pairs. 1764 records in RAM.
INFO 2026-06-08 09:12:36 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:8,365,941
INFO 2026-06-08 09:12:36 MarkDuplicates Tracking 11383 as yet unmatched pairs. 487 records in RAM.
INFO 2026-06-08 09:12:38 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:9,755,198
INFO 2026-06-08 09:12:38 MarkDuplicates Tracking 16962 as yet unmatched pairs. 4337 records in RAM.
INFO 2026-06-08 09:12:40 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 2s. Last read position: chr1:11,948,023
INFO 2026-06-08 09:12:40 MarkDuplicates Tracking 15541 as yet unmatched pairs. 857 records in RAM.
INFO 2026-06-08 09:12:42 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:15,727,130
INFO 2026-06-08 09:12:42 MarkDuplicates Tracking 17376 as yet unmatched pairs. 937 records in RAM.
INFO 2026-06-08 09:12:44 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:17,005,384
INFO 2026-06-08 09:12:44 MarkDuplicates Tracking 18868 as yet unmatched pairs. 776 records in RAM.
INFO 2026-06-08 09:12:46 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 2s. Last read position: chr1:19,655,152
INFO 2026-06-08 09:12:46 MarkDuplicates Tracking 21072 as yet unmatched pairs. 1305 records in RAM.
INFO 2026-06-08 09:12:49 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:21,824,725
INFO 2026-06-08 09:12:49 MarkDuplicates Tracking 25570 as yet unmatched pairs. 4065 records in RAM.
INFO 2026-06-08 09:12:51 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:21,854,634
INFO 2026-06-08 09:12:51 MarkDuplicates Tracking 26191 as yet unmatched pairs. 2684 records in RAM.
INFO 2026-06-08 09:12:53 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 2s. Last read position: chr1:22,078,427
INFO 2026-06-08 09:12:53 MarkDuplicates Tracking 26885 as yet unmatched pairs. 1493 records in RAM.
INFO 2026-06-08 09:12:55 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 2s. Last read position: chr1:22,647,536
INFO 2026-06-08 09:12:55 MarkDuplicates Tracking 32029 as yet unmatched pairs. 4844 records in RAM.
INFO 2026-06-08 09:12:57 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:23,961,778
INFO 2026-06-08 09:12:57 MarkDuplicates Tracking 29716 as yet unmatched pairs. 875 records in RAM.
INFO 2026-06-08 09:12:58 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:26,761,084
INFO 2026-06-08 09:12:58 MarkDuplicates Tracking 31338 as yet unmatched pairs. 724 records in RAM.
INFO 2026-06-08 09:13:00 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:27,412,578
INFO 2026-06-08 09:13:00 MarkDuplicates Tracking 33959 as yet unmatched pairs. 1744 records in RAM.
INFO 2026-06-08 09:13:02 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:30,876,920
INFO 2026-06-08 09:13:02 MarkDuplicates Tracking 35247 as yet unmatched pairs. 1137 records in RAM.
INFO 2026-06-08 09:13:03 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:31,680,919
INFO 2026-06-08 09:13:03 MarkDuplicates Tracking 37586 as yet unmatched pairs. 1579 records in RAM.
INFO 2026-06-08 09:13:05 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:32,786,982
INFO 2026-06-08 09:13:05 MarkDuplicates Tracking 38298 as yet unmatched pairs. 514 records in RAM.
INFO 2026-06-08 09:13:07 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:36,137,890
INFO 2026-06-08 09:13:07 MarkDuplicates Tracking 41129 as yet unmatched pairs. 1313 records in RAM.
INFO 2026-06-08 09:13:08 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:39,000,978
INFO 2026-06-08 09:13:08 MarkDuplicates Tracking 42224 as yet unmatched pairs. 600 records in RAM.
INFO 2026-06-08 09:13:10 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 2s. Last read position: chr1:40,070,252
INFO 2026-06-08 09:13:10 MarkDuplicates Tracking 44875 as yet unmatched pairs. 1733 records in RAM.
INFO 2026-06-08 09:13:12 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:42,929,681
INFO 2026-06-08 09:13:12 MarkDuplicates Tracking 49184 as yet unmatched pairs. 4096 records in RAM.
INFO 2026-06-08 09:13:14 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:43,617,834
INFO 2026-06-08 09:13:14 MarkDuplicates Tracking 48218 as yet unmatched pairs. 1288 records in RAM.
INFO 2026-06-08 09:13:16 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 2s. Last read position: chr1:45,566,677
INFO 2026-06-08 09:13:16 MarkDuplicates Tracking 50389 as yet unmatched pairs. 1504 records in RAM.
INFO 2026-06-08 09:13:17 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:52,263,782
INFO 2026-06-08 09:13:17 MarkDuplicates Tracking 50727 as yet unmatched pairs. 231 records in RAM.
INFO 2026-06-08 09:13:19 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:59,339,958
INFO 2026-06-08 09:13:19 MarkDuplicates Tracking 52405 as yet unmatched pairs. 125 records in RAM.
INFO 2026-06-08 09:13:21 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:76,699,921
INFO 2026-06-08 09:13:21 MarkDuplicates Tracking 54006 as yet unmatched pairs. 61 records in RAM.
INFO 2026-06-08 09:13:22 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:87,073,063
INFO 2026-06-08 09:13:22 MarkDuplicates Tracking 55803 as yet unmatched pairs. 332 records in RAM.
INFO 2026-06-08 09:13:25 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 2s. Last read position: chr1:94,902,192
INFO 2026-06-08 09:13:25 MarkDuplicates Tracking 58912 as yet unmatched pairs. 1858 records in RAM.
INFO 2026-06-08 09:13:27 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 2s. Last read position: chr1:109,917,389
INFO 2026-06-08 09:13:27 MarkDuplicates Tracking 58913 as yet unmatched pairs. 219 records in RAM.
INFO 2026-06-08 09:13:29 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 2s. Last read position: chr1:114,730,303
INFO 2026-06-08 09:13:29 MarkDuplicates Tracking 61713 as yet unmatched pairs. 1432 records in RAM.
INFO 2026-06-08 09:13:30 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:119,925,774
INFO 2026-06-08 09:13:30 MarkDuplicates Tracking 64471 as yet unmatched pairs. 2482 records in RAM.
INFO 2026-06-08 09:13:31 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:145,926,120
INFO 2026-06-08 09:13:31 MarkDuplicates Tracking 63529 as yet unmatched pairs. 439 records in RAM.
INFO 2026-06-08 09:13:33 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:148,952,766
INFO 2026-06-08 09:13:33 MarkDuplicates Tracking 64532 as yet unmatched pairs. 518 records in RAM.
INFO 2026-06-08 09:13:34 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:150,159,393
INFO 2026-06-08 09:13:34 MarkDuplicates Tracking 65838 as yet unmatched pairs. 801 records in RAM.
INFO 2026-06-08 09:13:36 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:150,966,253
INFO 2026-06-08 09:13:36 MarkDuplicates Tracking 67819 as yet unmatched pairs. 961 records in RAM.
INFO 2026-06-08 09:13:37 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:153,561,407
INFO 2026-06-08 09:13:37 MarkDuplicates Tracking 92169 as yet unmatched pairs. 23710 records in RAM.
INFO 2026-06-08 09:13:39 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:154,170,425
INFO 2026-06-08 09:13:39 MarkDuplicates Tracking 93267 as yet unmatched pairs. 23186 records in RAM.
INFO 2026-06-08 09:13:40 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:154,958,888
INFO 2026-06-08 09:13:40 MarkDuplicates Tracking 71945 as yet unmatched pairs. 359 records in RAM.
INFO 2026-06-08 09:13:42 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:155,325,594
INFO 2026-06-08 09:13:42 MarkDuplicates Tracking 74060 as yet unmatched pairs. 644 records in RAM.
INFO 2026-06-08 09:13:44 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:156,134,491
INFO 2026-06-08 09:13:44 MarkDuplicates Tracking 82570 as yet unmatched pairs. 7210 records in RAM.
INFO 2026-06-08 09:13:46 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:156,250,951
INFO 2026-06-08 09:13:46 MarkDuplicates Tracking 77977 as yet unmatched pairs. 455 records in RAM.
INFO 2026-06-08 09:13:47 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:159,049,556
INFO 2026-06-08 09:13:47 MarkDuplicates Tracking 80596 as yet unmatched pairs. 1440 records in RAM.
INFO 2026-06-08 09:13:49 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:161,120,497
INFO 2026-06-08 09:13:49 MarkDuplicates Tracking 81175 as yet unmatched pairs. 300 records in RAM.
INFO 2026-06-08 09:13:50 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:161,606,233
INFO 2026-06-08 09:13:50 MarkDuplicates Tracking 82898 as yet unmatched pairs. 425 records in RAM.
INFO 2026-06-08 09:13:52 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:169,597,087
INFO 2026-06-08 09:13:52 MarkDuplicates Tracking 84191 as yet unmatched pairs. 109 records in RAM.
INFO 2026-06-08 09:13:53 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:179,348,849
INFO 2026-06-08 09:13:53 MarkDuplicates Tracking 86527 as yet unmatched pairs. 967 records in RAM.
INFO 2026-06-08 09:13:55 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:183,117,569
INFO 2026-06-08 09:13:55 MarkDuplicates Tracking 89144 as yet unmatched pairs. 1636 records in RAM.
INFO 2026-06-08 09:13:56 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:183,231,036
INFO 2026-06-08 09:13:56 MarkDuplicates Tracking 97315 as yet unmatched pairs. 7839 records in RAM.
INFO 2026-06-08 09:13:58 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:184,795,173
INFO 2026-06-08 09:13:58 MarkDuplicates Tracking 91855 as yet unmatched pairs. 715 records in RAM.
INFO 2026-06-08 09:14:00 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:196,690,071
INFO 2026-06-08 09:14:00 MarkDuplicates Tracking 94132 as yet unmatched pairs. 1488 records in RAM.
INFO 2026-06-08 09:14:01 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:201,781,125
INFO 2026-06-08 09:14:01 MarkDuplicates Tracking 94705 as yet unmatched pairs. 523 records in RAM.
INFO 2026-06-08 09:14:03 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:203,829,617
INFO 2026-06-08 09:14:03 MarkDuplicates Tracking 97905 as yet unmatched pairs. 2087 records in RAM.
INFO 2026-06-08 09:14:05 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 2s. Last read position: chr1:207,552,013
INFO 2026-06-08 09:14:05 MarkDuplicates Tracking 97699 as yet unmatched pairs. 411 records in RAM.
INFO 2026-06-08 09:14:07 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 2s. Last read position: chr1:209,623,842
INFO 2026-06-08 09:14:07 MarkDuplicates Tracking 107900 as yet unmatched pairs. 8756 records in RAM.
INFO 2026-06-08 09:14:09 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:209,675,752
INFO 2026-06-08 09:14:09 MarkDuplicates Tracking 105544 as yet unmatched pairs. 4312 records in RAM.
INFO 2026-06-08 09:14:11 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:220,635,510
INFO 2026-06-08 09:14:11 MarkDuplicates Tracking 103037 as yet unmatched pairs. 151 records in RAM.
INFO 2026-06-08 09:14:12 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:226,152,377
INFO 2026-06-08 09:14:12 MarkDuplicates Tracking 105166 as yet unmatched pairs. 738 records in RAM.
INFO 2026-06-08 09:14:14 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:230,236,716
INFO 2026-06-08 09:14:14 MarkDuplicates Tracking 107417 as yet unmatched pairs. 774 records in RAM.
INFO 2026-06-08 09:14:16 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:236,544,844
INFO 2026-06-08 09:14:16 MarkDuplicates Tracking 108928 as yet unmatched pairs. 472 records in RAM.
INFO 2026-06-08 09:14:17 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr1:248,847,496
INFO 2026-06-08 09:14:17 MarkDuplicates Tracking 110176 as yet unmatched pairs. 56 records in RAM.
INFO 2026-06-08 09:14:20 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 2s. Last read position: chr2:9,588,210
INFO 2026-06-08 09:14:20 MarkDuplicates Tracking 113751 as yet unmatched pairs. 112833 records in RAM.
INFO 2026-06-08 09:14:21 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:20,202,819
INFO 2026-06-08 09:14:21 MarkDuplicates Tracking 125378 as yet unmatched pairs. 124441 records in RAM.
INFO 2026-06-08 09:14:24 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 2s. Last read position: chr2:24,074,114
INFO 2026-06-08 09:14:24 MarkDuplicates Tracking 116120 as yet unmatched pairs. 115172 records in RAM.
INFO 2026-06-08 09:14:25 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:27,085,249
INFO 2026-06-08 09:14:25 MarkDuplicates Tracking 118047 as yet unmatched pairs. 117094 records in RAM.
INFO 2026-06-08 09:14:27 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 2s. Last read position: chr2:28,778,854
INFO 2026-06-08 09:14:27 MarkDuplicates Tracking 124969 as yet unmatched pairs. 124010 records in RAM.
INFO 2026-06-08 09:14:29 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,256
INFO 2026-06-08 09:14:29 MarkDuplicates Tracking 173106 as yet unmatched pairs. 116859 records in RAM.
INFO 2026-06-08 09:14:31 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:14:31 MarkDuplicates Tracking 512812 as yet unmatched pairs. 98585 records in RAM.
INFO 2026-06-08 09:14:32 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:14:32 MarkDuplicates Tracking 894142 as yet unmatched pairs. 77942 records in RAM.
INFO 2026-06-08 09:14:34 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:33,222,087
INFO 2026-06-08 09:14:34 MarkDuplicates Tracking 955351 as yet unmatched pairs. 76863 records in RAM.
INFO 2026-06-08 09:14:35 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:38,749,664
INFO 2026-06-08 09:14:35 MarkDuplicates Tracking 952012 as yet unmatched pairs. 73512 records in RAM.
INFO 2026-06-08 09:14:37 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:46,347,017
INFO 2026-06-08 09:14:37 MarkDuplicates Tracking 951400 as yet unmatched pairs. 72884 records in RAM.
INFO 2026-06-08 09:14:39 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:54,629,171
INFO 2026-06-08 09:14:39 MarkDuplicates Tracking 948656 as yet unmatched pairs. 70127 records in RAM.
INFO 2026-06-08 09:14:40 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:55,419,136
INFO 2026-06-08 09:14:40 MarkDuplicates Tracking 946273 as yet unmatched pairs. 67742 records in RAM.
INFO 2026-06-08 09:14:42 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:64,635,900
INFO 2026-06-08 09:14:42 MarkDuplicates Tracking 945207 as yet unmatched pairs. 66664 records in RAM.
INFO 2026-06-08 09:14:44 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:71,072,713
INFO 2026-06-08 09:14:44 MarkDuplicates Tracking 943481 as yet unmatched pairs. 64918 records in RAM.
INFO 2026-06-08 09:14:45 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:74,370,211
INFO 2026-06-08 09:14:45 MarkDuplicates Tracking 941729 as yet unmatched pairs. 63141 records in RAM.
INFO 2026-06-08 09:14:47 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:85,327,376
INFO 2026-06-08 09:14:47 MarkDuplicates Tracking 939967 as yet unmatched pairs. 61367 records in RAM.
INFO 2026-06-08 09:14:48 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:95,286,846
INFO 2026-06-08 09:14:48 MarkDuplicates Tracking 939849 as yet unmatched pairs. 61195 records in RAM.
INFO 2026-06-08 09:14:50 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:101,002,737
INFO 2026-06-08 09:14:50 MarkDuplicates Tracking 940092 as yet unmatched pairs. 61416 records in RAM.
INFO 2026-06-08 09:14:52 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:108,740,631
INFO 2026-06-08 09:14:52 MarkDuplicates Tracking 936009 as yet unmatched pairs. 57325 records in RAM.
INFO 2026-06-08 09:14:53 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:110,526,333
INFO 2026-06-08 09:14:53 MarkDuplicates Tracking 934071 as yet unmatched pairs. 55382 records in RAM.
INFO 2026-06-08 09:14:55 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:113,495,659
INFO 2026-06-08 09:14:55 MarkDuplicates Tracking 932530 as yet unmatched pairs. 53833 records in RAM.
INFO 2026-06-08 09:14:57 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:128,159,583
INFO 2026-06-08 09:14:57 MarkDuplicates Tracking 931146 as yet unmatched pairs. 52407 records in RAM.
INFO 2026-06-08 09:14:58 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:137,964,531
INFO 2026-06-08 09:14:58 MarkDuplicates Tracking 929277 as yet unmatched pairs. 50489 records in RAM.
INFO 2026-06-08 09:15:00 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:159,780,057
INFO 2026-06-08 09:15:00 MarkDuplicates Tracking 927768 as yet unmatched pairs. 48962 records in RAM.
INFO 2026-06-08 09:15:02 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:171,541,585
INFO 2026-06-08 09:15:02 MarkDuplicates Tracking 926760 as yet unmatched pairs. 47936 records in RAM.
INFO 2026-06-08 09:15:03 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:174,229,419
INFO 2026-06-08 09:15:03 MarkDuplicates Tracking 925404 as yet unmatched pairs. 46574 records in RAM.
INFO 2026-06-08 09:15:05 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:178,721,034
INFO 2026-06-08 09:15:05 MarkDuplicates Tracking 923172 as yet unmatched pairs. 44335 records in RAM.
INFO 2026-06-08 09:15:07 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:188,984,812
INFO 2026-06-08 09:15:07 MarkDuplicates Tracking 930963 as yet unmatched pairs. 52102 records in RAM.
INFO 2026-06-08 09:15:09 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 2s. Last read position: chr2:188,996,124
INFO 2026-06-08 09:15:09 MarkDuplicates Tracking 930384 as yet unmatched pairs. 51511 records in RAM.
INFO 2026-06-08 09:15:10 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:189,005,401
INFO 2026-06-08 09:15:10 MarkDuplicates Tracking 926333 as yet unmatched pairs. 47450 records in RAM.
INFO 2026-06-08 09:15:12 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:189,052,171
INFO 2026-06-08 09:15:12 MarkDuplicates Tracking 918818 as yet unmatched pairs. 39921 records in RAM.
INFO 2026-06-08 09:15:14 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:191,414,059
INFO 2026-06-08 09:15:14 MarkDuplicates Tracking 914053 as yet unmatched pairs. 35145 records in RAM.
INFO 2026-06-08 09:15:16 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:201,761,317
INFO 2026-06-08 09:15:16 MarkDuplicates Tracking 912945 as yet unmatched pairs. 34004 records in RAM.
INFO 2026-06-08 09:15:18 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:215,019,779
INFO 2026-06-08 09:15:18 MarkDuplicates Tracking 910960 as yet unmatched pairs. 32006 records in RAM.
INFO 2026-06-08 09:15:20 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 2s. Last read position: chr2:215,365,527
INFO 2026-06-08 09:15:20 MarkDuplicates Tracking 936100 as yet unmatched pairs. 57129 records in RAM.
INFO 2026-06-08 09:15:21 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,005
INFO 2026-06-08 09:15:21 MarkDuplicates Tracking 951164 as yet unmatched pairs. 72193 records in RAM.
INFO 2026-06-08 09:15:23 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:215,373,411
INFO 2026-06-08 09:15:23 MarkDuplicates Tracking 938313 as yet unmatched pairs. 59342 records in RAM.
INFO 2026-06-08 09:15:25 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:215,376,646
INFO 2026-06-08 09:15:25 MarkDuplicates Tracking 941898 as yet unmatched pairs. 62924 records in RAM.
INFO 2026-06-08 09:15:26 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:215,382,259
INFO 2026-06-08 09:15:26 MarkDuplicates Tracking 942537 as yet unmatched pairs. 63534 records in RAM.
INFO 2026-06-08 09:15:28 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:215,386,906
INFO 2026-06-08 09:15:28 MarkDuplicates Tracking 935662 as yet unmatched pairs. 56653 records in RAM.
INFO 2026-06-08 09:15:30 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:215,397,209
INFO 2026-06-08 09:15:30 MarkDuplicates Tracking 934709 as yet unmatched pairs. 55699 records in RAM.
INFO 2026-06-08 09:15:31 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:215,406,351
INFO 2026-06-08 09:15:31 MarkDuplicates Tracking 921364 as yet unmatched pairs. 42347 records in RAM.
INFO 2026-06-08 09:15:33 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:215,409,563
INFO 2026-06-08 09:15:33 MarkDuplicates Tracking 942801 as yet unmatched pairs. 63777 records in RAM.
INFO 2026-06-08 09:15:34 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:215,419,375
INFO 2026-06-08 09:15:34 MarkDuplicates Tracking 904638 as yet unmatched pairs. 25608 records in RAM.
INFO 2026-06-08 09:15:36 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr2:215,425,187
INFO 2026-06-08 09:15:36 MarkDuplicates Tracking 906380 as yet unmatched pairs. 27342 records in RAM.
INFO 2026-06-08 09:15:38 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:215,433,396
INFO 2026-06-08 09:15:38 MarkDuplicates Tracking 908308 as yet unmatched pairs. 29269 records in RAM.
INFO 2026-06-08 09:15:39 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr2:217,848,462
INFO 2026-06-08 09:15:39 MarkDuplicates Tracking 892583 as yet unmatched pairs. 13537 records in RAM.
INFO 2026-06-08 09:15:41 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr2:219,232,545
INFO 2026-06-08 09:15:41 MarkDuplicates Tracking 890118 as yet unmatched pairs. 11068 records in RAM.
INFO 2026-06-08 09:15:43 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 2s. Last read position: chr2:219,629,476
INFO 2026-06-08 09:15:43 MarkDuplicates Tracking 887933 as yet unmatched pairs. 8879 records in RAM.
INFO 2026-06-08 09:15:45 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr2:231,072,321
INFO 2026-06-08 09:15:45 MarkDuplicates Tracking 887075 as yet unmatched pairs. 7992 records in RAM.
INFO 2026-06-08 09:15:46 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr2:236,581,273
INFO 2026-06-08 09:15:46 MarkDuplicates Tracking 885746 as yet unmatched pairs. 6648 records in RAM.
INFO 2026-06-08 09:15:48 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr2:237,376,774
INFO 2026-06-08 09:15:48 MarkDuplicates Tracking 885523 as yet unmatched pairs. 6421 records in RAM.
INFO 2026-06-08 09:15:50 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr2:240,466,234
INFO 2026-06-08 09:15:50 MarkDuplicates Tracking 881181 as yet unmatched pairs. 2046 records in RAM.
INFO 2026-06-08 09:15:52 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 2s. Last read position: chr3:4,691,146
INFO 2026-06-08 09:15:52 MarkDuplicates Tracking 879135 as yet unmatched pairs. 51150 records in RAM.
INFO 2026-06-08 09:15:54 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:12,836,114
INFO 2026-06-08 09:15:54 MarkDuplicates Tracking 878432 as yet unmatched pairs. 50429 records in RAM.
INFO 2026-06-08 09:15:56 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 2s. Last read position: chr3:30,672,101
INFO 2026-06-08 09:15:56 MarkDuplicates Tracking 876415 as yet unmatched pairs. 48391 records in RAM.
INFO 2026-06-08 09:15:58 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:40,457,932
INFO 2026-06-08 09:15:58 MarkDuplicates Tracking 875691 as yet unmatched pairs. 47666 records in RAM.
INFO 2026-06-08 09:16:00 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:46,996,559
INFO 2026-06-08 09:16:00 MarkDuplicates Tracking 872429 as yet unmatched pairs. 44395 records in RAM.
INFO 2026-06-08 09:16:01 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:48,565,181
INFO 2026-06-08 09:16:01 MarkDuplicates Tracking 876409 as yet unmatched pairs. 48356 records in RAM.
INFO 2026-06-08 09:16:03 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:48,576,999
INFO 2026-06-08 09:16:03 MarkDuplicates Tracking 873063 as yet unmatched pairs. 44995 records in RAM.
INFO 2026-06-08 09:16:05 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:48,590,344
INFO 2026-06-08 09:16:05 MarkDuplicates Tracking 872938 as yet unmatched pairs. 44858 records in RAM.
INFO 2026-06-08 09:16:07 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:49,122,944
INFO 2026-06-08 09:16:07 MarkDuplicates Tracking 864182 as yet unmatched pairs. 36040 records in RAM.
INFO 2026-06-08 09:16:08 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:50,257,042
INFO 2026-06-08 09:16:08 MarkDuplicates Tracking 862721 as yet unmatched pairs. 34560 records in RAM.
INFO 2026-06-08 09:16:10 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:52,505,329
INFO 2026-06-08 09:16:10 MarkDuplicates Tracking 861842 as yet unmatched pairs. 33663 records in RAM.
INFO 2026-06-08 09:16:12 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:53,885,474
INFO 2026-06-08 09:16:12 MarkDuplicates Tracking 857978 as yet unmatched pairs. 29776 records in RAM.
INFO 2026-06-08 09:16:13 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:64,631,865
INFO 2026-06-08 09:16:13 MarkDuplicates Tracking 856809 as yet unmatched pairs. 28592 records in RAM.
INFO 2026-06-08 09:16:15 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:98,901,270
INFO 2026-06-08 09:16:15 MarkDuplicates Tracking 856637 as yet unmatched pairs. 28403 records in RAM.
INFO 2026-06-08 09:16:17 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:105,367,440
INFO 2026-06-08 09:16:17 MarkDuplicates Tracking 855654 as yet unmatched pairs. 27401 records in RAM.
INFO 2026-06-08 09:16:18 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:113,664,342
INFO 2026-06-08 09:16:18 MarkDuplicates Tracking 852062 as yet unmatched pairs. 23786 records in RAM.
INFO 2026-06-08 09:16:20 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:122,528,462
INFO 2026-06-08 09:16:20 MarkDuplicates Tracking 850521 as yet unmatched pairs. 22234 records in RAM.
INFO 2026-06-08 09:16:21 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:126,007,159
INFO 2026-06-08 09:16:21 MarkDuplicates Tracking 849057 as yet unmatched pairs. 20758 records in RAM.
INFO 2026-06-08 09:16:23 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:128,067,440
INFO 2026-06-08 09:16:23 MarkDuplicates Tracking 850598 as yet unmatched pairs. 22295 records in RAM.
INFO 2026-06-08 09:16:25 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:129,559,653
INFO 2026-06-08 09:16:25 MarkDuplicates Tracking 845664 as yet unmatched pairs. 17350 records in RAM.
INFO 2026-06-08 09:16:26 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:134,370,793
INFO 2026-06-08 09:16:26 MarkDuplicates Tracking 843490 as yet unmatched pairs. 15170 records in RAM.
INFO 2026-06-08 09:16:28 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr3:142,423,562
INFO 2026-06-08 09:16:28 MarkDuplicates Tracking 841776 as yet unmatched pairs. 13430 records in RAM.
INFO 2026-06-08 09:16:30 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 2s. Last read position: chr3:150,622,475
INFO 2026-06-08 09:16:30 MarkDuplicates Tracking 841247 as yet unmatched pairs. 12885 records in RAM.
INFO 2026-06-08 09:16:32 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:160,521,863
INFO 2026-06-08 09:16:32 MarkDuplicates Tracking 838666 as yet unmatched pairs. 10245 records in RAM.
INFO 2026-06-08 09:16:34 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr3:179,219,676
INFO 2026-06-08 09:16:34 MarkDuplicates Tracking 837937 as yet unmatched pairs. 9487 records in RAM.
INFO 2026-06-08 09:16:36 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 2s. Last read position: chr3:184,179,054
INFO 2026-06-08 09:16:36 MarkDuplicates Tracking 838029 as yet unmatched pairs. 9568 records in RAM.
INFO 2026-06-08 09:16:38 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:184,323,806
INFO 2026-06-08 09:16:38 MarkDuplicates Tracking 835613 as yet unmatched pairs. 7133 records in RAM.
INFO 2026-06-08 09:16:39 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr3:188,609,181
INFO 2026-06-08 09:16:39 MarkDuplicates Tracking 834860 as yet unmatched pairs. 6361 records in RAM.
INFO 2026-06-08 09:16:41 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr3:195,069,873
INFO 2026-06-08 09:16:41 MarkDuplicates Tracking 830624 as yet unmatched pairs. 2106 records in RAM.
INFO 2026-06-08 09:16:43 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr3:197,954,057
INFO 2026-06-08 09:16:43 MarkDuplicates Tracking 829639 as yet unmatched pairs. 1092 records in RAM.
INFO 2026-06-08 09:16:44 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr4:1,735,767
INFO 2026-06-08 09:16:44 MarkDuplicates Tracking 827105 as yet unmatched pairs. 24110 records in RAM.
INFO 2026-06-08 09:16:46 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr4:2,944,131
INFO 2026-06-08 09:16:46 MarkDuplicates Tracking 825055 as yet unmatched pairs. 22044 records in RAM.
INFO 2026-06-08 09:16:48 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr4:6,999,089
INFO 2026-06-08 09:16:48 MarkDuplicates Tracking 824267 as yet unmatched pairs. 21243 records in RAM.
INFO 2026-06-08 09:16:50 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr4:10,099,014
INFO 2026-06-08 09:16:50 MarkDuplicates Tracking 822156 as yet unmatched pairs. 19099 records in RAM.
INFO 2026-06-08 09:16:51 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr4:27,008,486
INFO 2026-06-08 09:16:51 MarkDuplicates Tracking 819645 as yet unmatched pairs. 16565 records in RAM.
INFO 2026-06-08 09:16:53 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr4:39,838,107
INFO 2026-06-08 09:16:53 MarkDuplicates Tracking 818039 as yet unmatched pairs. 14930 records in RAM.
INFO 2026-06-08 09:16:54 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr4:54,267,685
INFO 2026-06-08 09:16:54 MarkDuplicates Tracking 816655 as yet unmatched pairs. 13540 records in RAM.
INFO 2026-06-08 09:16:56 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr4:73,121,714
INFO 2026-06-08 09:16:56 MarkDuplicates Tracking 814750 as yet unmatched pairs. 11608 records in RAM.
INFO 2026-06-08 09:16:58 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr4:78,181,461
INFO 2026-06-08 09:16:58 MarkDuplicates Tracking 812830 as yet unmatched pairs. 9666 records in RAM.
INFO 2026-06-08 09:16:59 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr4:87,178,499
INFO 2026-06-08 09:16:59 MarkDuplicates Tracking 811384 as yet unmatched pairs. 8196 records in RAM.
INFO 2026-06-08 09:17:00 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr4:102,690,650
INFO 2026-06-08 09:17:00 MarkDuplicates Tracking 810036 as yet unmatched pairs. 6826 records in RAM.
INFO 2026-06-08 09:17:03 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 2s. Last read position: chr4:119,031,964
INFO 2026-06-08 09:17:03 MarkDuplicates Tracking 808783 as yet unmatched pairs. 5549 records in RAM.
INFO 2026-06-08 09:17:04 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr4:140,657,184
INFO 2026-06-08 09:17:04 MarkDuplicates Tracking 806951 as yet unmatched pairs. 3695 records in RAM.
INFO 2026-06-08 09:17:06 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr4:158,155,766
INFO 2026-06-08 09:17:06 MarkDuplicates Tracking 806488 as yet unmatched pairs. 3209 records in RAM.
INFO 2026-06-08 09:17:07 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr4:184,803,448
INFO 2026-06-08 09:17:07 MarkDuplicates Tracking 804135 as yet unmatched pairs. 822 records in RAM.
INFO 2026-06-08 09:17:10 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 2s. Last read position: chr5:5,461,155
INFO 2026-06-08 09:17:10 MarkDuplicates Tracking 802376 as yet unmatched pairs. 35910 records in RAM.
INFO 2026-06-08 09:17:12 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr5:14,358,190
INFO 2026-06-08 09:17:12 MarkDuplicates Tracking 802756 as yet unmatched pairs. 36275 records in RAM.
INFO 2026-06-08 09:17:13 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr5:16,465,155
INFO 2026-06-08 09:17:13 MarkDuplicates Tracking 798789 as yet unmatched pairs. 32301 records in RAM.
INFO 2026-06-08 09:17:16 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 2s. Last read position: chr5:34,923,095
INFO 2026-06-08 09:17:16 MarkDuplicates Tracking 797296 as yet unmatched pairs. 30784 records in RAM.
INFO 2026-06-08 09:17:18 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 2s. Last read position: chr5:42,801,137
INFO 2026-06-08 09:17:18 MarkDuplicates Tracking 798245 as yet unmatched pairs. 31715 records in RAM.
INFO 2026-06-08 09:17:19 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:65,329,441
INFO 2026-06-08 09:17:19 MarkDuplicates Tracking 793692 as yet unmatched pairs. 27139 records in RAM.
INFO 2026-06-08 09:17:21 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr5:74,718,348
INFO 2026-06-08 09:17:21 MarkDuplicates Tracking 792839 as yet unmatched pairs. 26268 records in RAM.
INFO 2026-06-08 09:17:23 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr5:83,539,741
INFO 2026-06-08 09:17:23 MarkDuplicates Tracking 791599 as yet unmatched pairs. 25007 records in RAM.
INFO 2026-06-08 09:17:24 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:103,003,075
INFO 2026-06-08 09:17:24 MarkDuplicates Tracking 790391 as yet unmatched pairs. 23793 records in RAM.
INFO 2026-06-08 09:17:26 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:131,672,120
INFO 2026-06-08 09:17:26 MarkDuplicates Tracking 788166 as yet unmatched pairs. 21554 records in RAM.
INFO 2026-06-08 09:17:27 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr5:136,046,487
INFO 2026-06-08 09:17:27 MarkDuplicates Tracking 790227 as yet unmatched pairs. 23594 records in RAM.
INFO 2026-06-08 09:17:29 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:138,930,856
INFO 2026-06-08 09:17:29 MarkDuplicates Tracking 785001 as yet unmatched pairs. 18350 records in RAM.
INFO 2026-06-08 09:17:31 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr5:141,477,027
INFO 2026-06-08 09:17:31 MarkDuplicates Tracking 783838 as yet unmatched pairs. 17154 records in RAM.
INFO 2026-06-08 09:17:32 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr5:150,047,749
INFO 2026-06-08 09:17:32 MarkDuplicates Tracking 781298 as yet unmatched pairs. 14603 records in RAM.
INFO 2026-06-08 09:17:34 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,567
INFO 2026-06-08 09:17:34 MarkDuplicates Tracking 819123 as yet unmatched pairs. 52420 records in RAM.
INFO 2026-06-08 09:17:36 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:150,407,152
INFO 2026-06-08 09:17:36 MarkDuplicates Tracking 795430 as yet unmatched pairs. 28716 records in RAM.
INFO 2026-06-08 09:17:37 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:151,259,759
INFO 2026-06-08 09:17:37 MarkDuplicates Tracking 777133 as yet unmatched pairs. 10408 records in RAM.
INFO 2026-06-08 09:17:39 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:154,811,507
INFO 2026-06-08 09:17:39 MarkDuplicates Tracking 774987 as yet unmatched pairs. 8252 records in RAM.
INFO 2026-06-08 09:17:41 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:171,390,069
INFO 2026-06-08 09:17:41 MarkDuplicates Tracking 781438 as yet unmatched pairs. 14692 records in RAM.
INFO 2026-06-08 09:17:42 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:176,347,562
INFO 2026-06-08 09:17:42 MarkDuplicates Tracking 771932 as yet unmatched pairs. 5159 records in RAM.
INFO 2026-06-08 09:17:44 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:179,114,032
INFO 2026-06-08 09:17:44 MarkDuplicates Tracking 770405 as yet unmatched pairs. 3626 records in RAM.
INFO 2026-06-08 09:17:46 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:179,836,982
INFO 2026-06-08 09:17:46 MarkDuplicates Tracking 768816 as yet unmatched pairs. 2027 records in RAM.
INFO 2026-06-08 09:17:48 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 2s. Last read position: chr6:3,155,715
INFO 2026-06-08 09:17:48 MarkDuplicates Tracking 766937 as yet unmatched pairs. 51803 records in RAM.
INFO 2026-06-08 09:17:51 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 2s. Last read position: chr6:7,559,347
INFO 2026-06-08 09:17:51 MarkDuplicates Tracking 766012 as yet unmatched pairs. 50859 records in RAM.
INFO 2026-06-08 09:17:53 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 2s. Last read position: chr6:12,121,561
INFO 2026-06-08 09:17:53 MarkDuplicates Tracking 763158 as yet unmatched pairs. 48004 records in RAM.
INFO 2026-06-08 09:17:54 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:25,971,869
INFO 2026-06-08 09:17:54 MarkDuplicates Tracking 761270 as yet unmatched pairs. 46094 records in RAM.
INFO 2026-06-08 09:17:56 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr6:27,808,448
INFO 2026-06-08 09:17:56 MarkDuplicates Tracking 760679 as yet unmatched pairs. 45503 records in RAM.
INFO 2026-06-08 09:17:57 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr6:29,944,328
INFO 2026-06-08 09:17:57 MarkDuplicates Tracking 773556 as yet unmatched pairs. 58367 records in RAM.
INFO 2026-06-08 09:17:59 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr6:30,730,102
INFO 2026-06-08 09:17:59 MarkDuplicates Tracking 757871 as yet unmatched pairs. 42671 records in RAM.
INFO 2026-06-08 09:18:01 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:31,354,228
INFO 2026-06-08 09:18:01 MarkDuplicates Tracking 765652 as yet unmatched pairs. 50445 records in RAM.
INFO 2026-06-08 09:18:02 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:31,644,991
INFO 2026-06-08 09:18:02 MarkDuplicates Tracking 753533 as yet unmatched pairs. 38317 records in RAM.
INFO 2026-06-08 09:18:04 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:31,816,886
INFO 2026-06-08 09:18:04 MarkDuplicates Tracking 752580 as yet unmatched pairs. 37360 records in RAM.
INFO 2026-06-08 09:18:05 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,201
INFO 2026-06-08 09:18:05 MarkDuplicates Tracking 756857 as yet unmatched pairs. 41636 records in RAM.
INFO 2026-06-08 09:18:07 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr6:32,117,064
INFO 2026-06-08 09:18:07 MarkDuplicates Tracking 750469 as yet unmatched pairs. 35229 records in RAM.
INFO 2026-06-08 09:18:08 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr6:32,937,377
INFO 2026-06-08 09:18:08 MarkDuplicates Tracking 748169 as yet unmatched pairs. 32922 records in RAM.
INFO 2026-06-08 09:18:10 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:33,320,517
INFO 2026-06-08 09:18:10 MarkDuplicates Tracking 746339 as yet unmatched pairs. 31082 records in RAM.
INFO 2026-06-08 09:18:11 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr6:34,983,142
INFO 2026-06-08 09:18:11 MarkDuplicates Tracking 744085 as yet unmatched pairs. 28824 records in RAM.
INFO 2026-06-08 09:18:13 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr6:38,677,294
INFO 2026-06-08 09:18:13 MarkDuplicates Tracking 743451 as yet unmatched pairs. 28171 records in RAM.
INFO 2026-06-08 09:18:15 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr6:43,132,592
INFO 2026-06-08 09:18:15 MarkDuplicates Tracking 743137 as yet unmatched pairs. 27851 records in RAM.
INFO 2026-06-08 09:18:17 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 2s. Last read position: chr6:44,151,871
INFO 2026-06-08 09:18:17 MarkDuplicates Tracking 738830 as yet unmatched pairs. 23543 records in RAM.
INFO 2026-06-08 09:18:19 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 2s. Last read position: chr6:53,922,708
INFO 2026-06-08 09:18:19 MarkDuplicates Tracking 736593 as yet unmatched pairs. 21279 records in RAM.
INFO 2026-06-08 09:18:22 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 2s. Last read position: chr6:56,634,522
INFO 2026-06-08 09:18:22 MarkDuplicates Tracking 740921 as yet unmatched pairs. 25594 records in RAM.
INFO 2026-06-08 09:18:23 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr6:75,123,387
INFO 2026-06-08 09:18:23 MarkDuplicates Tracking 734200 as yet unmatched pairs. 18855 records in RAM.
INFO 2026-06-08 09:18:25 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr6:85,623,996
INFO 2026-06-08 09:18:25 MarkDuplicates Tracking 733557 as yet unmatched pairs. 18189 records in RAM.
INFO 2026-06-08 09:18:27 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 2s. Last read position: chr6:106,521,038
INFO 2026-06-08 09:18:27 MarkDuplicates Tracking 731209 as yet unmatched pairs. 15822 records in RAM.
INFO 2026-06-08 09:18:29 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr6:113,857,743
INFO 2026-06-08 09:18:29 MarkDuplicates Tracking 730751 as yet unmatched pairs. 15360 records in RAM.
INFO 2026-06-08 09:18:31 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr6:127,266,905
INFO 2026-06-08 09:18:31 MarkDuplicates Tracking 726896 as yet unmatched pairs. 11496 records in RAM.
INFO 2026-06-08 09:18:32 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:137,878,465
INFO 2026-06-08 09:18:32 MarkDuplicates Tracking 728289 as yet unmatched pairs. 12870 records in RAM.
INFO 2026-06-08 09:18:34 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr6:144,539,423
INFO 2026-06-08 09:18:34 MarkDuplicates Tracking 723805 as yet unmatched pairs. 8382 records in RAM.
INFO 2026-06-08 09:18:36 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 2s. Last read position: chr6:151,352,434
INFO 2026-06-08 09:18:36 MarkDuplicates Tracking 723131 as yet unmatched pairs. 7703 records in RAM.
INFO 2026-06-08 09:18:38 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:158,769,931
INFO 2026-06-08 09:18:38 MarkDuplicates Tracking 719983 as yet unmatched pairs. 4539 records in RAM.
INFO 2026-06-08 09:18:40 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 2s. Last read position: chr6:160,043,155
INFO 2026-06-08 09:18:40 MarkDuplicates Tracking 719231 as yet unmatched pairs. 3758 records in RAM.
INFO 2026-06-08 09:18:42 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:169,225,250
INFO 2026-06-08 09:18:42 MarkDuplicates Tracking 718644 as yet unmatched pairs. 3154 records in RAM.
INFO 2026-06-08 09:18:44 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 2s. Last read position: chr7:838,799
INFO 2026-06-08 09:18:44 MarkDuplicates Tracking 716665 as yet unmatched pairs. 57232 records in RAM.
INFO 2026-06-08 09:18:46 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr7:2,538,418
INFO 2026-06-08 09:18:46 MarkDuplicates Tracking 713298 as yet unmatched pairs. 53849 records in RAM.
INFO 2026-06-08 09:18:48 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:5,370,857
INFO 2026-06-08 09:18:48 MarkDuplicates Tracking 711744 as yet unmatched pairs. 52287 records in RAM.
INFO 2026-06-08 09:18:50 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,287
INFO 2026-06-08 09:18:50 MarkDuplicates Tracking 733175 as yet unmatched pairs. 73707 records in RAM.
INFO 2026-06-08 09:18:52 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,390
INFO 2026-06-08 09:18:52 MarkDuplicates Tracking 723266 as yet unmatched pairs. 63788 records in RAM.
INFO 2026-06-08 09:18:54 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr7:6,416,669
INFO 2026-06-08 09:18:54 MarkDuplicates Tracking 705164 as yet unmatched pairs. 45679 records in RAM.
INFO 2026-06-08 09:18:56 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 2s. Last read position: chr7:22,729,570
INFO 2026-06-08 09:18:56 MarkDuplicates Tracking 705451 as yet unmatched pairs. 45949 records in RAM.
INFO 2026-06-08 09:18:58 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:29,940,688
INFO 2026-06-08 09:18:58 MarkDuplicates Tracking 702561 as yet unmatched pairs. 43041 records in RAM.
INFO 2026-06-08 09:19:00 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr7:39,686,705
INFO 2026-06-08 09:19:00 MarkDuplicates Tracking 700421 as yet unmatched pairs. 40892 records in RAM.
INFO 2026-06-08 09:19:02 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 2s. Last read position: chr7:44,111,007
INFO 2026-06-08 09:19:02 MarkDuplicates Tracking 701484 as yet unmatched pairs. 41931 records in RAM.
INFO 2026-06-08 09:19:04 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 2s. Last read position: chr7:45,075,955
INFO 2026-06-08 09:19:04 MarkDuplicates Tracking 697020 as yet unmatched pairs. 37454 records in RAM.
INFO 2026-06-08 09:19:06 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr7:55,019,337
INFO 2026-06-08 09:19:06 MarkDuplicates Tracking 711259 as yet unmatched pairs. 51668 records in RAM.
INFO 2026-06-08 09:19:08 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:55,156,770
INFO 2026-06-08 09:19:08 MarkDuplicates Tracking 703877 as yet unmatched pairs. 44281 records in RAM.
INFO 2026-06-08 09:19:10 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:55,181,314
INFO 2026-06-08 09:19:10 MarkDuplicates Tracking 704284 as yet unmatched pairs. 44669 records in RAM.
INFO 2026-06-08 09:19:11 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:55,978,188
INFO 2026-06-08 09:19:11 MarkDuplicates Tracking 690516 as yet unmatched pairs. 30892 records in RAM.
INFO 2026-06-08 09:19:13 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr7:73,508,325
INFO 2026-06-08 09:19:13 MarkDuplicates Tracking 688946 as yet unmatched pairs. 29299 records in RAM.
INFO 2026-06-08 09:19:15 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:75,981,172
INFO 2026-06-08 09:19:15 MarkDuplicates Tracking 687699 as yet unmatched pairs. 28044 records in RAM.
INFO 2026-06-08 09:19:16 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr7:76,330,156
INFO 2026-06-08 09:19:16 MarkDuplicates Tracking 687363 as yet unmatched pairs. 27700 records in RAM.
INFO 2026-06-08 09:19:18 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 2s. Last read position: chr7:92,102,773
INFO 2026-06-08 09:19:18 MarkDuplicates Tracking 684333 as yet unmatched pairs. 24662 records in RAM.
INFO 2026-06-08 09:19:20 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:94,409,574
INFO 2026-06-08 09:19:20 MarkDuplicates Tracking 693063 as yet unmatched pairs. 33371 records in RAM.
INFO 2026-06-08 09:19:22 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 2s. Last read position: chr7:94,424,403
INFO 2026-06-08 09:19:22 MarkDuplicates Tracking 691069 as yet unmatched pairs. 31363 records in RAM.
INFO 2026-06-08 09:19:24 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr7:98,282,418
INFO 2026-06-08 09:19:24 MarkDuplicates Tracking 682253 as yet unmatched pairs. 22535 records in RAM.
INFO 2026-06-08 09:19:26 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:100,430,224
INFO 2026-06-08 09:19:26 MarkDuplicates Tracking 676782 as yet unmatched pairs. 17055 records in RAM.
INFO 2026-06-08 09:19:28 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:101,130,420
INFO 2026-06-08 09:19:28 MarkDuplicates Tracking 681926 as yet unmatched pairs. 22191 records in RAM.
INFO 2026-06-08 09:19:29 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr7:102,506,741
INFO 2026-06-08 09:19:29 MarkDuplicates Tracking 673029 as yet unmatched pairs. 13290 records in RAM.
INFO 2026-06-08 09:19:31 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr7:107,743,944
INFO 2026-06-08 09:19:31 MarkDuplicates Tracking 671440 as yet unmatched pairs. 11689 records in RAM.
INFO 2026-06-08 09:19:33 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 2s. Last read position: chr7:116,758,490
INFO 2026-06-08 09:19:33 MarkDuplicates Tracking 671674 as yet unmatched pairs. 11902 records in RAM.
INFO 2026-06-08 09:20:33 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 59s. Last read position: chr7:128,084,808
INFO 2026-06-08 09:20:33 MarkDuplicates Tracking 671012 as yet unmatched pairs. 11213 records in RAM.
INFO 2026-06-08 09:20:35 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr7:134,662,076
INFO 2026-06-08 09:20:35 MarkDuplicates Tracking 667981 as yet unmatched pairs. 8157 records in RAM.
INFO 2026-06-08 09:20:36 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr7:140,544,537
INFO 2026-06-08 09:20:36 MarkDuplicates Tracking 665397 as yet unmatched pairs. 5547 records in RAM.
INFO 2026-06-08 09:20:38 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr7:144,363,652
INFO 2026-06-08 09:20:38 MarkDuplicates Tracking 663904 as yet unmatched pairs. 4048 records in RAM.
INFO 2026-06-08 09:20:39 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr7:151,081,625
INFO 2026-06-08 09:20:39 MarkDuplicates Tracking 662779 as yet unmatched pairs. 2909 records in RAM.
INFO 2026-06-08 09:20:41 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr7:158,829,202
INFO 2026-06-08 09:20:41 MarkDuplicates Tracking 661794 as yet unmatched pairs. 1912 records in RAM.
INFO 2026-06-08 09:20:43 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 2s. Last read position: chr8:11,850,881
INFO 2026-06-08 09:20:43 MarkDuplicates Tracking 663557 as yet unmatched pairs. 45465 records in RAM.
INFO 2026-06-08 09:20:45 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr8:22,570,975
INFO 2026-06-08 09:20:45 MarkDuplicates Tracking 657354 as yet unmatched pairs. 39236 records in RAM.
INFO 2026-06-08 09:20:47 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr8:28,110,416
INFO 2026-06-08 09:20:47 MarkDuplicates Tracking 655051 as yet unmatched pairs. 36920 records in RAM.
INFO 2026-06-08 09:20:48 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr8:38,819,950
INFO 2026-06-08 09:20:48 MarkDuplicates Tracking 655468 as yet unmatched pairs. 37323 records in RAM.
INFO 2026-06-08 09:20:50 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr8:47,776,864
INFO 2026-06-08 09:20:50 MarkDuplicates Tracking 652619 as yet unmatched pairs. 34458 records in RAM.
INFO 2026-06-08 09:20:52 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr8:56,073,149
INFO 2026-06-08 09:20:52 MarkDuplicates Tracking 660780 as yet unmatched pairs. 42619 records in RAM.
INFO 2026-06-08 09:20:54 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr8:67,299,256
INFO 2026-06-08 09:20:54 MarkDuplicates Tracking 648584 as yet unmatched pairs. 30419 records in RAM.
INFO 2026-06-08 09:20:55 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr8:86,411,820
INFO 2026-06-08 09:20:55 MarkDuplicates Tracking 646657 as yet unmatched pairs. 28476 records in RAM.
INFO 2026-06-08 09:20:57 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr8:97,825,126
INFO 2026-06-08 09:20:57 MarkDuplicates Tracking 646136 as yet unmatched pairs. 27946 records in RAM.
INFO 2026-06-08 09:20:58 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr8:100,721,424
INFO 2026-06-08 09:20:58 MarkDuplicates Tracking 652534 as yet unmatched pairs. 34336 records in RAM.
INFO 2026-06-08 09:21:00 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr8:103,382,472
INFO 2026-06-08 09:21:00 MarkDuplicates Tracking 642909 as yet unmatched pairs. 24695 records in RAM.
INFO 2026-06-08 09:21:02 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr8:123,041,977
INFO 2026-06-08 09:21:02 MarkDuplicates Tracking 641520 as yet unmatched pairs. 23303 records in RAM.
INFO 2026-06-08 09:21:04 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 2s. Last read position: chr8:127,740,448
INFO 2026-06-08 09:21:04 MarkDuplicates Tracking 641012 as yet unmatched pairs. 22791 records in RAM.
INFO 2026-06-08 09:21:06 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr8:133,250,487
INFO 2026-06-08 09:21:06 MarkDuplicates Tracking 651006 as yet unmatched pairs. 32781 records in RAM.
INFO 2026-06-08 09:21:08 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr8:140,846,255
INFO 2026-06-08 09:21:08 MarkDuplicates Tracking 635862 as yet unmatched pairs. 17627 records in RAM.
INFO 2026-06-08 09:21:10 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 2s. Last read position: chr8:143,726,344
INFO 2026-06-08 09:21:10 MarkDuplicates Tracking 634685 as yet unmatched pairs. 16436 records in RAM.
INFO 2026-06-08 09:21:12 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,990
INFO 2026-06-08 09:21:12 MarkDuplicates Tracking 632640 as yet unmatched pairs. 14390 records in RAM.
INFO 2026-06-08 09:21:13 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr8:143,918,343
INFO 2026-06-08 09:21:13 MarkDuplicates Tracking 634292 as yet unmatched pairs. 16034 records in RAM.
INFO 2026-06-08 09:21:15 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:143,921,885
INFO 2026-06-08 09:21:15 MarkDuplicates Tracking 629392 as yet unmatched pairs. 11133 records in RAM.
INFO 2026-06-08 09:21:16 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr8:143,929,409
INFO 2026-06-08 09:21:16 MarkDuplicates Tracking 626695 as yet unmatched pairs. 8433 records in RAM.
INFO 2026-06-08 09:21:18 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr8:143,991,961
INFO 2026-06-08 09:21:18 MarkDuplicates Tracking 624503 as yet unmatched pairs. 6227 records in RAM.
INFO 2026-06-08 09:21:19 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr8:144,392,495
INFO 2026-06-08 09:21:19 MarkDuplicates Tracking 620263 as yet unmatched pairs. 1969 records in RAM.
INFO 2026-06-08 09:21:21 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr9:4,118,315
INFO 2026-06-08 09:21:21 MarkDuplicates Tracking 618023 as yet unmatched pairs. 38571 records in RAM.
INFO 2026-06-08 09:21:23 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr9:26,892,601
INFO 2026-06-08 09:21:23 MarkDuplicates Tracking 616340 as yet unmatched pairs. 36848 records in RAM.
INFO 2026-06-08 09:21:25 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr9:35,056,988
INFO 2026-06-08 09:21:25 MarkDuplicates Tracking 615515 as yet unmatched pairs. 36004 records in RAM.
INFO 2026-06-08 09:21:26 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr9:35,685,649
INFO 2026-06-08 09:21:26 MarkDuplicates Tracking 614746 as yet unmatched pairs. 35220 records in RAM.
INFO 2026-06-08 09:21:28 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr9:35,717,178
INFO 2026-06-08 09:21:28 MarkDuplicates Tracking 614064 as yet unmatched pairs. 34529 records in RAM.
INFO 2026-06-08 09:21:30 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr9:36,211,672
INFO 2026-06-08 09:21:30 MarkDuplicates Tracking 611038 as yet unmatched pairs. 31488 records in RAM.
INFO 2026-06-08 09:21:31 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr9:70,259,023
INFO 2026-06-08 09:21:31 MarkDuplicates Tracking 608135 as yet unmatched pairs. 28580 records in RAM.
INFO 2026-06-08 09:21:33 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 2s. Last read position: chr9:83,972,925
INFO 2026-06-08 09:21:33 MarkDuplicates Tracking 606927 as yet unmatched pairs. 27367 records in RAM.
INFO 2026-06-08 09:21:35 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 2s. Last read position: chr9:92,718,884
INFO 2026-06-08 09:21:35 MarkDuplicates Tracking 604846 as yet unmatched pairs. 25261 records in RAM.
INFO 2026-06-08 09:21:37 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr9:98,944,164
INFO 2026-06-08 09:21:37 MarkDuplicates Tracking 604571 as yet unmatched pairs. 24970 records in RAM.
INFO 2026-06-08 09:21:39 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr9:106,929,197
INFO 2026-06-08 09:21:39 MarkDuplicates Tracking 600879 as yet unmatched pairs. 21268 records in RAM.
INFO 2026-06-08 09:21:40 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr9:113,188,444
INFO 2026-06-08 09:21:40 MarkDuplicates Tracking 599298 as yet unmatched pairs. 19684 records in RAM.
INFO 2026-06-08 09:21:42 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr9:115,035,316
INFO 2026-06-08 09:21:42 MarkDuplicates Tracking 603904 as yet unmatched pairs. 24282 records in RAM.
INFO 2026-06-08 09:21:43 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr9:115,086,480
INFO 2026-06-08 09:21:43 MarkDuplicates Tracking 603538 as yet unmatched pairs. 23912 records in RAM.
INFO 2026-06-08 09:21:45 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr9:121,318,724
INFO 2026-06-08 09:21:45 MarkDuplicates Tracking 594754 as yet unmatched pairs. 15119 records in RAM.
INFO 2026-06-08 09:21:47 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr9:125,238,651
INFO 2026-06-08 09:21:47 MarkDuplicates Tracking 593517 as yet unmatched pairs. 13872 records in RAM.
INFO 2026-06-08 09:21:48 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr9:128,284,568
INFO 2026-06-08 09:21:48 MarkDuplicates Tracking 590474 as yet unmatched pairs. 10826 records in RAM.
INFO 2026-06-08 09:21:50 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr9:130,219,753
INFO 2026-06-08 09:21:50 MarkDuplicates Tracking 588936 as yet unmatched pairs. 9264 records in RAM.
INFO 2026-06-08 09:21:52 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr9:133,348,999
INFO 2026-06-08 09:21:52 MarkDuplicates Tracking 588740 as yet unmatched pairs. 9058 records in RAM.
INFO 2026-06-08 09:21:53 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr9:134,768,452
INFO 2026-06-08 09:21:53 MarkDuplicates Tracking 590377 as yet unmatched pairs. 10692 records in RAM.
INFO 2026-06-08 09:21:55 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr9:136,208,993
INFO 2026-06-08 09:21:55 MarkDuplicates Tracking 583016 as yet unmatched pairs. 3313 records in RAM.
INFO 2026-06-08 09:21:57 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 2s. Last read position: chr9:137,114,335
INFO 2026-06-08 09:21:57 MarkDuplicates Tracking 581082 as yet unmatched pairs. 1376 records in RAM.
INFO 2026-06-08 09:22:00 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 2s. Last read position: chr10:3,781,858
INFO 2026-06-08 09:22:00 MarkDuplicates Tracking 580288 as yet unmatched pairs. 35520 records in RAM.
INFO 2026-06-08 09:22:01 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr10:6,226,335
INFO 2026-06-08 09:22:01 MarkDuplicates Tracking 579727 as yet unmatched pairs. 34951 records in RAM.
INFO 2026-06-08 09:22:03 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr10:17,236,305
INFO 2026-06-08 09:22:03 MarkDuplicates Tracking 579392 as yet unmatched pairs. 34597 records in RAM.
INFO 2026-06-08 09:22:05 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr10:27,119,325
INFO 2026-06-08 09:22:05 MarkDuplicates Tracking 574850 as yet unmatched pairs. 30047 records in RAM.
INFO 2026-06-08 09:22:06 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr10:32,284,777
INFO 2026-06-08 09:22:06 MarkDuplicates Tracking 572719 as yet unmatched pairs. 27911 records in RAM.
INFO 2026-06-08 09:22:08 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr10:34,360,171
INFO 2026-06-08 09:22:08 MarkDuplicates Tracking 571635 as yet unmatched pairs. 26813 records in RAM.
INFO 2026-06-08 09:22:10 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr10:46,379,823
INFO 2026-06-08 09:22:10 MarkDuplicates Tracking 573706 as yet unmatched pairs. 28862 records in RAM.
INFO 2026-06-08 09:22:11 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr10:60,198,233
INFO 2026-06-08 09:22:11 MarkDuplicates Tracking 568223 as yet unmatched pairs. 23374 records in RAM.
INFO 2026-06-08 09:22:13 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr10:70,404,369
INFO 2026-06-08 09:22:13 MarkDuplicates Tracking 566851 as yet unmatched pairs. 21993 records in RAM.
INFO 2026-06-08 09:22:14 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr10:73,388,311
INFO 2026-06-08 09:22:14 MarkDuplicates Tracking 565846 as yet unmatched pairs. 20968 records in RAM.
INFO 2026-06-08 09:22:16 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr10:75,222,383
INFO 2026-06-08 09:22:16 MarkDuplicates Tracking 564496 as yet unmatched pairs. 19613 records in RAM.
INFO 2026-06-08 09:22:18 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr10:86,890,203
INFO 2026-06-08 09:22:18 MarkDuplicates Tracking 561656 as yet unmatched pairs. 16762 records in RAM.
INFO 2026-06-08 09:22:20 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr10:93,306,874
INFO 2026-06-08 09:22:20 MarkDuplicates Tracking 560924 as yet unmatched pairs. 16025 records in RAM.
INFO 2026-06-08 09:22:22 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr10:97,426,270
INFO 2026-06-08 09:22:22 MarkDuplicates Tracking 558457 as yet unmatched pairs. 13549 records in RAM.
INFO 2026-06-08 09:22:23 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr10:101,005,601
INFO 2026-06-08 09:22:23 MarkDuplicates Tracking 556598 as yet unmatched pairs. 11682 records in RAM.
INFO 2026-06-08 09:22:26 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 2s. Last read position: chr10:102,812,670
INFO 2026-06-08 09:22:26 MarkDuplicates Tracking 554667 as yet unmatched pairs. 9736 records in RAM.
INFO 2026-06-08 09:22:28 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr10:104,037,636
INFO 2026-06-08 09:22:28 MarkDuplicates Tracking 556744 as yet unmatched pairs. 11800 records in RAM.
INFO 2026-06-08 09:22:29 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr10:104,064,549
INFO 2026-06-08 09:22:29 MarkDuplicates Tracking 557598 as yet unmatched pairs. 12654 records in RAM.
INFO 2026-06-08 09:22:31 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr10:114,846,592
INFO 2026-06-08 09:22:31 MarkDuplicates Tracking 549428 as yet unmatched pairs. 4483 records in RAM.
INFO 2026-06-08 09:22:32 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr10:122,086,611
INFO 2026-06-08 09:22:32 MarkDuplicates Tracking 547810 as yet unmatched pairs. 2865 records in RAM.
INFO 2026-06-08 09:22:34 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr10:128,115,664
INFO 2026-06-08 09:22:34 MarkDuplicates Tracking 546322 as yet unmatched pairs. 1368 records in RAM.
INFO 2026-06-08 09:22:36 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 2s. Last read position: chr11:314,932
INFO 2026-06-08 09:22:36 MarkDuplicates Tracking 549589 as yet unmatched pairs. 76796 records in RAM.
INFO 2026-06-08 09:22:38 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr11:403,645
INFO 2026-06-08 09:22:38 MarkDuplicates Tracking 543830 as yet unmatched pairs. 71035 records in RAM.
INFO 2026-06-08 09:22:40 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr11:883,234
INFO 2026-06-08 09:22:40 MarkDuplicates Tracking 541516 as yet unmatched pairs. 68718 records in RAM.
INFO 2026-06-08 09:22:41 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr11:2,394,158
INFO 2026-06-08 09:22:41 MarkDuplicates Tracking 542163 as yet unmatched pairs. 69356 records in RAM.
INFO 2026-06-08 09:22:43 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr11:6,609,615
INFO 2026-06-08 09:22:43 MarkDuplicates Tracking 537076 as yet unmatched pairs. 64260 records in RAM.
INFO 2026-06-08 09:22:45 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr11:9,785,246
INFO 2026-06-08 09:22:45 MarkDuplicates Tracking 534554 as yet unmatched pairs. 61737 records in RAM.
INFO 2026-06-08 09:22:46 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr11:11,933,101
INFO 2026-06-08 09:22:46 MarkDuplicates Tracking 532804 as yet unmatched pairs. 59983 records in RAM.
INFO 2026-06-08 09:22:49 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 2s. Last read position: chr11:18,291,907
INFO 2026-06-08 09:22:49 MarkDuplicates Tracking 531288 as yet unmatched pairs. 58447 records in RAM.
INFO 2026-06-08 09:22:51 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr11:33,339,355
INFO 2026-06-08 09:22:51 MarkDuplicates Tracking 530649 as yet unmatched pairs. 57803 records in RAM.
INFO 2026-06-08 09:22:52 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr11:35,211,407
INFO 2026-06-08 09:22:52 MarkDuplicates Tracking 531984 as yet unmatched pairs. 59131 records in RAM.
INFO 2026-06-08 09:22:54 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr11:46,372,960
INFO 2026-06-08 09:22:54 MarkDuplicates Tracking 526936 as yet unmatched pairs. 54063 records in RAM.
INFO 2026-06-08 09:22:56 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr11:48,123,672
INFO 2026-06-08 09:22:56 MarkDuplicates Tracking 524848 as yet unmatched pairs. 51974 records in RAM.
INFO 2026-06-08 09:22:57 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr11:57,699,089
INFO 2026-06-08 09:22:57 MarkDuplicates Tracking 523983 as yet unmatched pairs. 51108 records in RAM.
INFO 2026-06-08 09:22:59 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:60,919,754
INFO 2026-06-08 09:22:59 MarkDuplicates Tracking 522175 as yet unmatched pairs. 49289 records in RAM.
INFO 2026-06-08 09:23:01 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr11:61,878,188
INFO 2026-06-08 09:23:01 MarkDuplicates Tracking 519921 as yet unmatched pairs. 47035 records in RAM.
INFO 2026-06-08 09:23:02 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:62,519,499
INFO 2026-06-08 09:23:02 MarkDuplicates Tracking 520242 as yet unmatched pairs. 47355 records in RAM.
INFO 2026-06-08 09:23:04 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:62,525,391
INFO 2026-06-08 09:23:04 MarkDuplicates Tracking 520526 as yet unmatched pairs. 47635 records in RAM.
INFO 2026-06-08 09:23:06 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:62,530,524
INFO 2026-06-08 09:23:06 MarkDuplicates Tracking 518001 as yet unmatched pairs. 45109 records in RAM.
INFO 2026-06-08 09:23:07 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:62,602,586
INFO 2026-06-08 09:23:07 MarkDuplicates Tracking 514454 as yet unmatched pairs. 41550 records in RAM.
INFO 2026-06-08 09:23:09 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:62,885,553
INFO 2026-06-08 09:23:09 MarkDuplicates Tracking 515143 as yet unmatched pairs. 42236 records in RAM.
INFO 2026-06-08 09:23:11 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr11:64,246,528
INFO 2026-06-08 09:23:11 MarkDuplicates Tracking 512933 as yet unmatched pairs. 40013 records in RAM.
INFO 2026-06-08 09:23:13 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 2s. Last read position: chr11:64,834,951
INFO 2026-06-08 09:23:13 MarkDuplicates Tracking 508154 as yet unmatched pairs. 35231 records in RAM.
INFO 2026-06-08 09:23:15 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 2s. Last read position: chr11:65,206,523
INFO 2026-06-08 09:23:15 MarkDuplicates Tracking 508121 as yet unmatched pairs. 35195 records in RAM.
INFO 2026-06-08 09:23:17 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:65,583,696
INFO 2026-06-08 09:23:17 MarkDuplicates Tracking 505116 as yet unmatched pairs. 32165 records in RAM.
INFO 2026-06-08 09:23:19 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:65,855,416
INFO 2026-06-08 09:23:19 MarkDuplicates Tracking 505313 as yet unmatched pairs. 32356 records in RAM.
INFO 2026-06-08 09:23:20 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr11:66,268,608
INFO 2026-06-08 09:23:20 MarkDuplicates Tracking 499907 as yet unmatched pairs. 26949 records in RAM.
INFO 2026-06-08 09:23:22 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr11:67,070,531
INFO 2026-06-08 09:23:22 MarkDuplicates Tracking 498571 as yet unmatched pairs. 25601 records in RAM.
INFO 2026-06-08 09:23:24 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr11:67,584,690
INFO 2026-06-08 09:23:24 MarkDuplicates Tracking 504421 as yet unmatched pairs. 31448 records in RAM.
INFO 2026-06-08 09:23:25 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:69,641,419
INFO 2026-06-08 09:23:25 MarkDuplicates Tracking 499968 as yet unmatched pairs. 26988 records in RAM.
INFO 2026-06-08 09:23:27 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:71,438,939
INFO 2026-06-08 09:23:27 MarkDuplicates Tracking 492358 as yet unmatched pairs. 19372 records in RAM.
INFO 2026-06-08 09:23:28 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr11:72,757,774
INFO 2026-06-08 09:23:28 MarkDuplicates Tracking 490754 as yet unmatched pairs. 17754 records in RAM.
INFO 2026-06-08 09:23:30 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:75,404,107
INFO 2026-06-08 09:23:30 MarkDuplicates Tracking 493504 as yet unmatched pairs. 20495 records in RAM.
INFO 2026-06-08 09:23:32 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:78,069,975
INFO 2026-06-08 09:23:32 MarkDuplicates Tracking 489023 as yet unmatched pairs. 16011 records in RAM.
INFO 2026-06-08 09:23:33 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:88,294,243
INFO 2026-06-08 09:23:33 MarkDuplicates Tracking 489181 as yet unmatched pairs. 16157 records in RAM.
INFO 2026-06-08 09:23:35 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:102,114,276
INFO 2026-06-08 09:23:35 MarkDuplicates Tracking 487974 as yet unmatched pairs. 14939 records in RAM.
INFO 2026-06-08 09:23:38 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 2s. Last read position: chr11:107,590,332
INFO 2026-06-08 09:23:38 MarkDuplicates Tracking 482152 as yet unmatched pairs. 9104 records in RAM.
INFO 2026-06-08 09:23:40 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 2s. Last read position: chr11:117,206,060
INFO 2026-06-08 09:23:40 MarkDuplicates Tracking 481218 as yet unmatched pairs. 8159 records in RAM.
INFO 2026-06-08 09:23:41 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr11:118,901,860
INFO 2026-06-08 09:23:41 MarkDuplicates Tracking 479585 as yet unmatched pairs. 6523 records in RAM.
INFO 2026-06-08 09:23:43 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr11:120,122,973
INFO 2026-06-08 09:23:43 MarkDuplicates Tracking 478778 as yet unmatched pairs. 5713 records in RAM.
INFO 2026-06-08 09:23:45 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr11:125,460,572
INFO 2026-06-08 09:23:45 MarkDuplicates Tracking 475898 as yet unmatched pairs. 2825 records in RAM.
INFO 2026-06-08 09:23:47 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr11:130,135,697
INFO 2026-06-08 09:23:47 MarkDuplicates Tracking 477711 as yet unmatched pairs. 4637 records in RAM.
INFO 2026-06-08 09:23:49 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 2s. Last read position: chr12:1,183,300
INFO 2026-06-08 09:23:49 MarkDuplicates Tracking 472416 as yet unmatched pairs. 58639 records in RAM.
INFO 2026-06-08 09:23:50 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr12:6,236,258
INFO 2026-06-08 09:23:50 MarkDuplicates Tracking 473319 as yet unmatched pairs. 59536 records in RAM.
INFO 2026-06-08 09:23:52 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr12:6,600,623
INFO 2026-06-08 09:23:52 MarkDuplicates Tracking 468894 as yet unmatched pairs. 55107 records in RAM.
INFO 2026-06-08 09:23:54 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr12:6,938,528
INFO 2026-06-08 09:23:54 MarkDuplicates Tracking 468324 as yet unmatched pairs. 54533 records in RAM.
INFO 2026-06-08 09:23:55 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr12:7,486,667
INFO 2026-06-08 09:23:55 MarkDuplicates Tracking 469408 as yet unmatched pairs. 55617 records in RAM.
INFO 2026-06-08 09:23:57 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr12:10,027,669
INFO 2026-06-08 09:23:57 MarkDuplicates Tracking 463547 as yet unmatched pairs. 49751 records in RAM.
INFO 2026-06-08 09:23:59 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr12:15,789,097
INFO 2026-06-08 09:23:59 MarkDuplicates Tracking 461965 as yet unmatched pairs. 48141 records in RAM.
INFO 2026-06-08 09:24:00 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr12:27,969,396
INFO 2026-06-08 09:24:00 MarkDuplicates Tracking 464430 as yet unmatched pairs. 50602 records in RAM.
INFO 2026-06-08 09:24:02 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr12:46,361,197
INFO 2026-06-08 09:24:02 MarkDuplicates Tracking 465051 as yet unmatched pairs. 51222 records in RAM.
INFO 2026-06-08 09:24:03 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr12:49,034,106
INFO 2026-06-08 09:24:03 MarkDuplicates Tracking 457399 as yet unmatched pairs. 43568 records in RAM.
INFO 2026-06-08 09:24:05 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr12:49,186,691
INFO 2026-06-08 09:24:05 MarkDuplicates Tracking 456728 as yet unmatched pairs. 42896 records in RAM.
INFO 2026-06-08 09:24:07 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr12:50,181,913
INFO 2026-06-08 09:24:07 MarkDuplicates Tracking 459426 as yet unmatched pairs. 45592 records in RAM.
INFO 2026-06-08 09:24:08 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr12:52,451,780
INFO 2026-06-08 09:24:08 MarkDuplicates Tracking 454181 as yet unmatched pairs. 40347 records in RAM.
INFO 2026-06-08 09:24:09 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr12:52,488,099
INFO 2026-06-08 09:24:09 MarkDuplicates Tracking 485288 as yet unmatched pairs. 71449 records in RAM.
INFO 2026-06-08 09:24:11 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr12:52,492,841
INFO 2026-06-08 09:24:11 MarkDuplicates Tracking 474834 as yet unmatched pairs. 60994 records in RAM.
INFO 2026-06-08 09:24:13 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr12:52,516,665
INFO 2026-06-08 09:24:13 MarkDuplicates Tracking 470919 as yet unmatched pairs. 57071 records in RAM.
INFO 2026-06-08 09:24:14 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr12:52,519,988
INFO 2026-06-08 09:24:14 MarkDuplicates Tracking 464293 as yet unmatched pairs. 50437 records in RAM.
INFO 2026-06-08 09:24:16 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr12:53,442,709
INFO 2026-06-08 09:24:16 MarkDuplicates Tracking 445967 as yet unmatched pairs. 32109 records in RAM.
INFO 2026-06-08 09:24:17 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr12:54,398,650
INFO 2026-06-08 09:24:17 MarkDuplicates Tracking 448259 as yet unmatched pairs. 34397 records in RAM.
INFO 2026-06-08 09:24:19 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr12:55,727,204
INFO 2026-06-08 09:24:19 MarkDuplicates Tracking 447116 as yet unmatched pairs. 33254 records in RAM.
INFO 2026-06-08 09:24:21 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr12:56,161,397
INFO 2026-06-08 09:24:21 MarkDuplicates Tracking 447498 as yet unmatched pairs. 33622 records in RAM.
INFO 2026-06-08 09:24:22 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:56,714,622
INFO 2026-06-08 09:24:22 MarkDuplicates Tracking 446891 as yet unmatched pairs. 33012 records in RAM.
INFO 2026-06-08 09:24:24 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr12:57,175,645
INFO 2026-06-08 09:24:24 MarkDuplicates Tracking 439417 as yet unmatched pairs. 25537 records in RAM.
INFO 2026-06-08 09:24:26 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr12:57,479,090
INFO 2026-06-08 09:24:26 MarkDuplicates Tracking 435719 as yet unmatched pairs. 21830 records in RAM.
INFO 2026-06-08 09:24:27 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr12:64,111,923
INFO 2026-06-08 09:24:27 MarkDuplicates Tracking 434196 as yet unmatched pairs. 20299 records in RAM.
INFO 2026-06-08 09:24:29 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr12:71,663,155
INFO 2026-06-08 09:24:29 MarkDuplicates Tracking 433027 as yet unmatched pairs. 19107 records in RAM.
INFO 2026-06-08 09:24:30 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:91,108,764
INFO 2026-06-08 09:24:30 MarkDuplicates Tracking 433528 as yet unmatched pairs. 19593 records in RAM.
INFO 2026-06-08 09:24:32 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr12:98,598,589
INFO 2026-06-08 09:24:32 MarkDuplicates Tracking 431696 as yet unmatched pairs. 17752 records in RAM.
INFO 2026-06-08 09:24:33 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:104,265,368
INFO 2026-06-08 09:24:33 MarkDuplicates Tracking 428704 as yet unmatched pairs. 14759 records in RAM.
INFO 2026-06-08 09:24:36 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 2s. Last read position: chr12:108,788,059
INFO 2026-06-08 09:24:36 MarkDuplicates Tracking 426816 as yet unmatched pairs. 12871 records in RAM.
INFO 2026-06-08 09:24:38 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr12:111,755,678
INFO 2026-06-08 09:24:38 MarkDuplicates Tracking 424629 as yet unmatched pairs. 10683 records in RAM.
INFO 2026-06-08 09:24:39 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr12:115,961,304
INFO 2026-06-08 09:24:39 MarkDuplicates Tracking 423346 as yet unmatched pairs. 9394 records in RAM.
INFO 2026-06-08 09:24:42 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 2s. Last read position: chr12:120,221,686
INFO 2026-06-08 09:24:42 MarkDuplicates Tracking 422930 as yet unmatched pairs. 8969 records in RAM.
INFO 2026-06-08 09:24:43 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr12:122,355,274
INFO 2026-06-08 09:24:43 MarkDuplicates Tracking 420158 as yet unmatched pairs. 6191 records in RAM.
INFO 2026-06-08 09:24:45 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr12:124,340,678
INFO 2026-06-08 09:24:45 MarkDuplicates Tracking 418861 as yet unmatched pairs. 4890 records in RAM.
INFO 2026-06-08 09:24:47 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr12:131,917,021
INFO 2026-06-08 09:24:47 MarkDuplicates Tracking 416300 as yet unmatched pairs. 2327 records in RAM.
INFO 2026-06-08 09:24:48 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr13:19,993,254
INFO 2026-06-08 09:24:48 MarkDuplicates Tracking 415439 as yet unmatched pairs. 16784 records in RAM.
INFO 2026-06-08 09:24:50 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr13:24,500,352
INFO 2026-06-08 09:24:50 MarkDuplicates Tracking 412566 as yet unmatched pairs. 13908 records in RAM.
INFO 2026-06-08 09:24:51 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr13:37,580,595
INFO 2026-06-08 09:24:51 MarkDuplicates Tracking 412870 as yet unmatched pairs. 14208 records in RAM.
INFO 2026-06-08 09:24:53 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr13:46,343,324
INFO 2026-06-08 09:24:53 MarkDuplicates Tracking 409249 as yet unmatched pairs. 10586 records in RAM.
INFO 2026-06-08 09:24:55 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr13:77,061,220
INFO 2026-06-08 09:24:55 MarkDuplicates Tracking 407813 as yet unmatched pairs. 9142 records in RAM.
INFO 2026-06-08 09:24:56 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr13:99,255,669
INFO 2026-06-08 09:24:56 MarkDuplicates Tracking 406321 as yet unmatched pairs. 7647 records in RAM.
INFO 2026-06-08 09:24:58 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr13:110,178,127
INFO 2026-06-08 09:24:58 MarkDuplicates Tracking 406217 as yet unmatched pairs. 7532 records in RAM.
INFO 2026-06-08 09:25:00 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr13:110,430,580
INFO 2026-06-08 09:25:00 MarkDuplicates Tracking 404190 as yet unmatched pairs. 5494 records in RAM.
INFO 2026-06-08 09:25:02 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr13:110,719,376
INFO 2026-06-08 09:25:02 MarkDuplicates Tracking 400870 as yet unmatched pairs. 2164 records in RAM.
INFO 2026-06-08 09:25:04 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 2s. Last read position: chr14:20,456,046
INFO 2026-06-08 09:25:04 MarkDuplicates Tracking 399329 as yet unmatched pairs. 35095 records in RAM.
INFO 2026-06-08 09:25:06 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr14:22,841,991
INFO 2026-06-08 09:25:06 MarkDuplicates Tracking 401402 as yet unmatched pairs. 37168 records in RAM.
INFO 2026-06-08 09:25:07 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr14:23,308,080
INFO 2026-06-08 09:25:07 MarkDuplicates Tracking 395575 as yet unmatched pairs. 31340 records in RAM.
INFO 2026-06-08 09:25:09 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr14:24,408,135
INFO 2026-06-08 09:25:09 MarkDuplicates Tracking 393627 as yet unmatched pairs. 29381 records in RAM.
INFO 2026-06-08 09:25:11 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr14:35,402,623
INFO 2026-06-08 09:25:11 MarkDuplicates Tracking 396038 as yet unmatched pairs. 31786 records in RAM.
INFO 2026-06-08 09:25:13 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr14:50,743,516
INFO 2026-06-08 09:25:13 MarkDuplicates Tracking 390568 as yet unmatched pairs. 26281 records in RAM.
INFO 2026-06-08 09:25:14 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr14:55,351,374
INFO 2026-06-08 09:25:14 MarkDuplicates Tracking 389224 as yet unmatched pairs. 24935 records in RAM.
INFO 2026-06-08 09:25:17 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 2s. Last read position: chr14:61,738,296
INFO 2026-06-08 09:25:17 MarkDuplicates Tracking 389673 as yet unmatched pairs. 25382 records in RAM.
INFO 2026-06-08 09:25:18 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr14:67,349,075
INFO 2026-06-08 09:25:18 MarkDuplicates Tracking 386292 as yet unmatched pairs. 21992 records in RAM.
INFO 2026-06-08 09:25:20 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr14:68,925,608
INFO 2026-06-08 09:25:20 MarkDuplicates Tracking 387998 as yet unmatched pairs. 23692 records in RAM.
INFO 2026-06-08 09:25:22 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 2s. Last read position: chr14:73,739,948
INFO 2026-06-08 09:25:22 MarkDuplicates Tracking 382247 as yet unmatched pairs. 17925 records in RAM.
INFO 2026-06-08 09:25:25 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 2s. Last read position: chr14:75,280,802
INFO 2026-06-08 09:25:25 MarkDuplicates Tracking 385197 as yet unmatched pairs. 20867 records in RAM.
INFO 2026-06-08 09:25:27 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr14:90,397,166
INFO 2026-06-08 09:25:27 MarkDuplicates Tracking 381072 as yet unmatched pairs. 16724 records in RAM.
INFO 2026-06-08 09:25:28 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr14:94,127,792
INFO 2026-06-08 09:25:28 MarkDuplicates Tracking 377334 as yet unmatched pairs. 12985 records in RAM.
INFO 2026-06-08 09:25:30 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr14:101,997,170
INFO 2026-06-08 09:25:30 MarkDuplicates Tracking 375956 as yet unmatched pairs. 11605 records in RAM.
INFO 2026-06-08 09:25:32 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr14:102,983,631
INFO 2026-06-08 09:25:32 MarkDuplicates Tracking 374086 as yet unmatched pairs. 9726 records in RAM.
INFO 2026-06-08 09:25:34 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr14:104,887,018
INFO 2026-06-08 09:25:34 MarkDuplicates Tracking 371914 as yet unmatched pairs. 7550 records in RAM.
INFO 2026-06-08 09:25:35 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr14:104,944,053
INFO 2026-06-08 09:25:35 MarkDuplicates Tracking 376827 as yet unmatched pairs. 12456 records in RAM.
INFO 2026-06-08 09:25:37 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr14:104,948,154
INFO 2026-06-08 09:25:37 MarkDuplicates Tracking 381087 as yet unmatched pairs. 16713 records in RAM.
INFO 2026-06-08 09:25:39 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr14:104,953,027
INFO 2026-06-08 09:25:39 MarkDuplicates Tracking 370541 as yet unmatched pairs. 6167 records in RAM.
INFO 2026-06-08 09:25:40 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,622
INFO 2026-06-08 09:25:40 MarkDuplicates Tracking 367492 as yet unmatched pairs. 3118 records in RAM.
INFO 2026-06-08 09:25:42 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 2s. Last read position: chr15:28,206,320
INFO 2026-06-08 09:25:42 MarkDuplicates Tracking 363927 as yet unmatched pairs. 21036 records in RAM.
INFO 2026-06-08 09:25:44 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr15:39,582,518
INFO 2026-06-08 09:25:44 MarkDuplicates Tracking 375309 as yet unmatched pairs. 32410 records in RAM.
INFO 2026-06-08 09:25:46 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 2s. Last read position: chr15:39,593,208
INFO 2026-06-08 09:25:46 MarkDuplicates Tracking 372206 as yet unmatched pairs. 29300 records in RAM.
INFO 2026-06-08 09:25:49 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 2s. Last read position: chr15:41,909,770
INFO 2026-06-08 09:25:49 MarkDuplicates Tracking 359344 as yet unmatched pairs. 16425 records in RAM.
INFO 2026-06-08 09:25:50 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr15:44,711,549
INFO 2026-06-08 09:25:50 MarkDuplicates Tracking 360299 as yet unmatched pairs. 17376 records in RAM.
INFO 2026-06-08 09:25:52 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr15:52,321,472
INFO 2026-06-08 09:25:52 MarkDuplicates Tracking 355917 as yet unmatched pairs. 12992 records in RAM.
INFO 2026-06-08 09:25:54 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr15:61,890,360
INFO 2026-06-08 09:25:54 MarkDuplicates Tracking 354657 as yet unmatched pairs. 11730 records in RAM.
INFO 2026-06-08 09:25:56 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr15:66,485,035
INFO 2026-06-08 09:25:56 MarkDuplicates Tracking 354354 as yet unmatched pairs. 11422 records in RAM.
INFO 2026-06-08 09:25:58 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 2s. Last read position: chr15:72,353,714
INFO 2026-06-08 09:25:58 MarkDuplicates Tracking 352300 as yet unmatched pairs. 9355 records in RAM.
INFO 2026-06-08 09:26:00 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr15:75,400,771
INFO 2026-06-08 09:26:00 MarkDuplicates Tracking 349592 as yet unmatched pairs. 6644 records in RAM.
INFO 2026-06-08 09:26:02 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr15:80,137,503
INFO 2026-06-08 09:26:02 MarkDuplicates Tracking 347796 as yet unmatched pairs. 4844 records in RAM.
INFO 2026-06-08 09:26:03 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr15:89,185,383
INFO 2026-06-08 09:26:03 MarkDuplicates Tracking 346049 as yet unmatched pairs. 3095 records in RAM.
INFO 2026-06-08 09:26:05 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr15:90,956,617
INFO 2026-06-08 09:26:05 MarkDuplicates Tracking 343970 as yet unmatched pairs. 1016 records in RAM.
INFO 2026-06-08 09:26:08 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 2s. Last read position: chr16:377,095
INFO 2026-06-08 09:26:08 MarkDuplicates Tracking 343021 as yet unmatched pairs. 48530 records in RAM.
INFO 2026-06-08 09:26:11 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 2s. Last read position: chr16:1,361,922
INFO 2026-06-08 09:26:11 MarkDuplicates Tracking 340657 as yet unmatched pairs. 46163 records in RAM.
INFO 2026-06-08 09:26:13 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 2s. Last read position: chr16:2,084,257
INFO 2026-06-08 09:26:13 MarkDuplicates Tracking 337975 as yet unmatched pairs. 43481 records in RAM.
INFO 2026-06-08 09:26:14 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr16:2,761,724
INFO 2026-06-08 09:26:14 MarkDuplicates Tracking 336170 as yet unmatched pairs. 41676 records in RAM.
INFO 2026-06-08 09:26:16 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr16:3,069,182
INFO 2026-06-08 09:26:16 MarkDuplicates Tracking 335892 as yet unmatched pairs. 41398 records in RAM.
INFO 2026-06-08 09:26:18 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr16:8,811,021
INFO 2026-06-08 09:26:18 MarkDuplicates Tracking 332071 as yet unmatched pairs. 37562 records in RAM.
INFO 2026-06-08 09:26:19 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr16:14,853,594
INFO 2026-06-08 09:26:19 MarkDuplicates Tracking 330706 as yet unmatched pairs. 36195 records in RAM.
INFO 2026-06-08 09:26:21 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr16:16,036,513
INFO 2026-06-08 09:26:21 MarkDuplicates Tracking 329450 as yet unmatched pairs. 34934 records in RAM.
INFO 2026-06-08 09:26:22 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr16:18,351,340
INFO 2026-06-08 09:26:22 MarkDuplicates Tracking 329298 as yet unmatched pairs. 34781 records in RAM.
INFO 2026-06-08 09:26:24 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr16:19,633,106
INFO 2026-06-08 09:26:24 MarkDuplicates Tracking 327049 as yet unmatched pairs. 32523 records in RAM.
INFO 2026-06-08 09:26:25 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr16:22,469,056
INFO 2026-06-08 09:26:25 MarkDuplicates Tracking 325928 as yet unmatched pairs. 31390 records in RAM.
INFO 2026-06-08 09:26:27 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 2s. Last read position: chr16:27,497,650
INFO 2026-06-08 09:26:27 MarkDuplicates Tracking 324681 as yet unmatched pairs. 30143 records in RAM.
INFO 2026-06-08 09:26:29 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr16:29,449,533
INFO 2026-06-08 09:26:29 MarkDuplicates Tracking 324422 as yet unmatched pairs. 29880 records in RAM.
INFO 2026-06-08 09:26:31 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 2s. Last read position: chr16:30,065,811
INFO 2026-06-08 09:26:31 MarkDuplicates Tracking 322117 as yet unmatched pairs. 27574 records in RAM.
INFO 2026-06-08 09:26:33 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr16:30,369,743
INFO 2026-06-08 09:26:33 MarkDuplicates Tracking 320603 as yet unmatched pairs. 26060 records in RAM.
INFO 2026-06-08 09:26:35 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:31,111,929
INFO 2026-06-08 09:26:35 MarkDuplicates Tracking 318203 as yet unmatched pairs. 23655 records in RAM.
INFO 2026-06-08 09:26:36 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr16:47,155,727
INFO 2026-06-08 09:26:36 MarkDuplicates Tracking 317125 as yet unmatched pairs. 22574 records in RAM.
INFO 2026-06-08 09:26:38 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr16:55,488,690
INFO 2026-06-08 09:26:38 MarkDuplicates Tracking 316744 as yet unmatched pairs. 22192 records in RAM.
INFO 2026-06-08 09:26:40 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:56,609,292
INFO 2026-06-08 09:26:40 MarkDuplicates Tracking 320901 as yet unmatched pairs. 26344 records in RAM.
INFO 2026-06-08 09:26:41 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr16:57,753,183
INFO 2026-06-08 09:26:41 MarkDuplicates Tracking 310711 as yet unmatched pairs. 16154 records in RAM.
INFO 2026-06-08 09:26:43 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr16:67,192,778
INFO 2026-06-08 09:26:43 MarkDuplicates Tracking 308913 as yet unmatched pairs. 14349 records in RAM.
INFO 2026-06-08 09:26:45 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr16:68,645,684
INFO 2026-06-08 09:26:45 MarkDuplicates Tracking 310870 as yet unmatched pairs. 16297 records in RAM.
INFO 2026-06-08 09:26:46 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr16:69,744,969
INFO 2026-06-08 09:26:46 MarkDuplicates Tracking 305533 as yet unmatched pairs. 10959 records in RAM.
INFO 2026-06-08 09:26:48 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:74,296,948
INFO 2026-06-08 09:26:48 MarkDuplicates Tracking 305050 as yet unmatched pairs. 10470 records in RAM.
INFO 2026-06-08 09:26:50 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr16:81,494,914
INFO 2026-06-08 09:26:50 MarkDuplicates Tracking 302364 as yet unmatched pairs. 7781 records in RAM.
INFO 2026-06-08 09:26:52 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr16:87,411,888
INFO 2026-06-08 09:26:52 MarkDuplicates Tracking 300155 as yet unmatched pairs. 5567 records in RAM.
INFO 2026-06-08 09:26:54 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 2s. Last read position: chr16:88,716,644
INFO 2026-06-08 09:26:54 MarkDuplicates Tracking 298833 as yet unmatched pairs. 4239 records in RAM.
INFO 2026-06-08 09:26:56 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 2s. Last read position: chr16:89,562,918
INFO 2026-06-08 09:26:56 MarkDuplicates Tracking 296312 as yet unmatched pairs. 1717 records in RAM.
INFO 2026-06-08 09:26:59 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 3s. Last read position: chr17:1,364,904
INFO 2026-06-08 09:26:59 MarkDuplicates Tracking 297558 as yet unmatched pairs. 107654 records in RAM.
INFO 2026-06-08 09:27:01 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr17:2,691,847
INFO 2026-06-08 09:27:01 MarkDuplicates Tracking 292067 as yet unmatched pairs. 102163 records in RAM.
INFO 2026-06-08 09:27:02 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr17:5,007,491
INFO 2026-06-08 09:27:02 MarkDuplicates Tracking 291215 as yet unmatched pairs. 101298 records in RAM.
INFO 2026-06-08 09:27:04 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr17:7,408,354
INFO 2026-06-08 09:27:04 MarkDuplicates Tracking 288636 as yet unmatched pairs. 98719 records in RAM.
INFO 2026-06-08 09:27:06 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr17:7,847,907
INFO 2026-06-08 09:27:06 MarkDuplicates Tracking 287116 as yet unmatched pairs. 97172 records in RAM.
INFO 2026-06-08 09:27:07 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr17:13,496,458
INFO 2026-06-08 09:27:07 MarkDuplicates Tracking 285285 as yet unmatched pairs. 95338 records in RAM.
INFO 2026-06-08 09:27:09 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr17:17,793,338
INFO 2026-06-08 09:27:09 MarkDuplicates Tracking 284457 as yet unmatched pairs. 94510 records in RAM.
INFO 2026-06-08 09:27:11 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr17:19,283,476
INFO 2026-06-08 09:27:11 MarkDuplicates Tracking 282300 as yet unmatched pairs. 92353 records in RAM.
INFO 2026-06-08 09:27:13 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr17:28,633,651
INFO 2026-06-08 09:27:13 MarkDuplicates Tracking 281185 as yet unmatched pairs. 91236 records in RAM.
INFO 2026-06-08 09:27:14 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr17:29,581,964
INFO 2026-06-08 09:27:14 MarkDuplicates Tracking 279324 as yet unmatched pairs. 89375 records in RAM.
INFO 2026-06-08 09:27:16 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr17:34,980,605
INFO 2026-06-08 09:27:16 MarkDuplicates Tracking 277144 as yet unmatched pairs. 87181 records in RAM.
INFO 2026-06-08 09:27:17 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr17:38,059,866
INFO 2026-06-08 09:27:17 MarkDuplicates Tracking 275413 as yet unmatched pairs. 85450 records in RAM.
INFO 2026-06-08 09:27:19 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr17:39,709,813
INFO 2026-06-08 09:27:19 MarkDuplicates Tracking 275069 as yet unmatched pairs. 85101 records in RAM.
INFO 2026-06-08 09:27:21 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr17:40,480,744
INFO 2026-06-08 09:27:21 MarkDuplicates Tracking 274991 as yet unmatched pairs. 85020 records in RAM.
INFO 2026-06-08 09:27:23 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr17:41,528,109
INFO 2026-06-08 09:27:23 MarkDuplicates Tracking 273140 as yet unmatched pairs. 83166 records in RAM.
INFO 2026-06-08 09:27:25 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr17:41,586,348
INFO 2026-06-08 09:27:25 MarkDuplicates Tracking 292575 as yet unmatched pairs. 102600 records in RAM.
INFO 2026-06-08 09:27:26 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr17:41,620,838
INFO 2026-06-08 09:27:26 MarkDuplicates Tracking 279574 as yet unmatched pairs. 89597 records in RAM.
INFO 2026-06-08 09:27:29 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 2s. Last read position: chr17:41,624,465
INFO 2026-06-08 09:27:29 MarkDuplicates Tracking 263889 as yet unmatched pairs. 73912 records in RAM.
INFO 2026-06-08 09:27:31 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr17:42,315,737
INFO 2026-06-08 09:27:31 MarkDuplicates Tracking 264979 as yet unmatched pairs. 75002 records in RAM.
INFO 2026-06-08 09:27:32 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr17:43,533,227
INFO 2026-06-08 09:27:32 MarkDuplicates Tracking 260313 as yet unmatched pairs. 70324 records in RAM.
INFO 2026-06-08 09:27:34 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr17:45,115,171
INFO 2026-06-08 09:27:34 MarkDuplicates Tracking 258652 as yet unmatched pairs. 68658 records in RAM.
INFO 2026-06-08 09:27:36 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr17:48,841,700
INFO 2026-06-08 09:27:36 MarkDuplicates Tracking 256883 as yet unmatched pairs. 66886 records in RAM.
INFO 2026-06-08 09:27:38 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr17:50,087,816
INFO 2026-06-08 09:27:38 MarkDuplicates Tracking 260066 as yet unmatched pairs. 70069 records in RAM.
INFO 2026-06-08 09:27:39 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,997
INFO 2026-06-08 09:27:39 MarkDuplicates Tracking 280640 as yet unmatched pairs. 90643 records in RAM.
INFO 2026-06-08 09:29:52 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 132s. Last read position: chr17:50,187,014
INFO 2026-06-08 09:29:52 MarkDuplicates Tracking 305778 as yet unmatched pairs. 115781 records in RAM.
INFO 2026-06-08 09:29:54 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,893
INFO 2026-06-08 09:29:54 MarkDuplicates Tracking 358148 as yet unmatched pairs. 168146 records in RAM.
INFO 2026-06-08 09:29:56 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,539
INFO 2026-06-08 09:29:56 MarkDuplicates Tracking 315737 as yet unmatched pairs. 125733 records in RAM.
INFO 2026-06-08 09:29:58 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,928
INFO 2026-06-08 09:29:58 MarkDuplicates Tracking 327639 as yet unmatched pairs. 137635 records in RAM.
INFO 2026-06-08 09:30:00 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,433
INFO 2026-06-08 09:30:00 MarkDuplicates Tracking 314026 as yet unmatched pairs. 124014 records in RAM.
INFO 2026-06-08 09:30:02 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,880
INFO 2026-06-08 09:30:02 MarkDuplicates Tracking 330069 as yet unmatched pairs. 140052 records in RAM.
INFO 2026-06-08 09:30:04 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,354
INFO 2026-06-08 09:30:04 MarkDuplicates Tracking 340730 as yet unmatched pairs. 150711 records in RAM.
INFO 2026-06-08 09:30:06 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,414
INFO 2026-06-08 09:30:06 MarkDuplicates Tracking 318850 as yet unmatched pairs. 128825 records in RAM.
INFO 2026-06-08 09:30:08 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,004
INFO 2026-06-08 09:30:08 MarkDuplicates Tracking 340836 as yet unmatched pairs. 150810 records in RAM.
INFO 2026-06-08 09:30:11 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 2s. Last read position: chr17:50,192,829
INFO 2026-06-08 09:30:11 MarkDuplicates Tracking 339453 as yet unmatched pairs. 149419 records in RAM.
INFO 2026-06-08 09:30:13 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 2s. Last read position: chr17:50,193,998
INFO 2026-06-08 09:30:13 MarkDuplicates Tracking 338512 as yet unmatched pairs. 148478 records in RAM.
INFO 2026-06-08 09:30:15 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,406
INFO 2026-06-08 09:30:15 MarkDuplicates Tracking 321847 as yet unmatched pairs. 131813 records in RAM.
INFO 2026-06-08 09:30:18 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 3s. Last read position: chr17:50,194,789
INFO 2026-06-08 09:30:18 MarkDuplicates Tracking 329371 as yet unmatched pairs. 139335 records in RAM.
INFO 2026-06-08 09:30:20 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,457
INFO 2026-06-08 09:30:20 MarkDuplicates Tracking 295686 as yet unmatched pairs. 105645 records in RAM.
INFO 2026-06-08 09:30:22 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,964
INFO 2026-06-08 09:30:22 MarkDuplicates Tracking 316304 as yet unmatched pairs. 126254 records in RAM.
INFO 2026-06-08 09:30:25 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,483
INFO 2026-06-08 09:30:25 MarkDuplicates Tracking 304064 as yet unmatched pairs. 114010 records in RAM.
INFO 2026-06-08 09:30:27 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,180
INFO 2026-06-08 09:30:27 MarkDuplicates Tracking 361306 as yet unmatched pairs. 171247 records in RAM.
INFO 2026-06-08 09:30:28 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,176
INFO 2026-06-08 09:30:28 MarkDuplicates Tracking 277307 as yet unmatched pairs. 87248 records in RAM.
INFO 2026-06-08 09:30:30 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,305
INFO 2026-06-08 09:30:30 MarkDuplicates Tracking 267405 as yet unmatched pairs. 77345 records in RAM.
INFO 2026-06-08 09:30:32 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr17:50,201,442
INFO 2026-06-08 09:30:32 MarkDuplicates Tracking 236638 as yet unmatched pairs. 46578 records in RAM.
INFO 2026-06-08 09:30:34 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr17:58,005,865
INFO 2026-06-08 09:30:34 MarkDuplicates Tracking 214884 as yet unmatched pairs. 24808 records in RAM.
INFO 2026-06-08 09:30:35 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr17:59,683,418
INFO 2026-06-08 09:30:35 MarkDuplicates Tracking 214691 as yet unmatched pairs. 24610 records in RAM.
INFO 2026-06-08 09:30:37 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr17:63,435,762
INFO 2026-06-08 09:30:37 MarkDuplicates Tracking 211924 as yet unmatched pairs. 21843 records in RAM.
INFO 2026-06-08 09:30:39 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 2s. Last read position: chr17:67,357,416
INFO 2026-06-08 09:30:39 MarkDuplicates Tracking 209896 as yet unmatched pairs. 19811 records in RAM.
INFO 2026-06-08 09:30:41 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr17:74,204,171
INFO 2026-06-08 09:30:41 MarkDuplicates Tracking 212818 as yet unmatched pairs. 22730 records in RAM.
INFO 2026-06-08 09:30:43 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 2s. Last read position: chr17:75,730,269
INFO 2026-06-08 09:30:43 MarkDuplicates Tracking 211070 as yet unmatched pairs. 20980 records in RAM.
INFO 2026-06-08 09:30:46 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 2s. Last read position: chr17:75,756,938
INFO 2026-06-08 09:30:46 MarkDuplicates Tracking 207572 as yet unmatched pairs. 17482 records in RAM.
INFO 2026-06-08 09:30:48 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr17:76,452,989
INFO 2026-06-08 09:30:48 MarkDuplicates Tracking 201607 as yet unmatched pairs. 11517 records in RAM.
INFO 2026-06-08 09:30:49 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr17:78,214,287
INFO 2026-06-08 09:30:49 MarkDuplicates Tracking 200140 as yet unmatched pairs. 10048 records in RAM.
INFO 2026-06-08 09:30:51 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr17:80,118,237
INFO 2026-06-08 09:30:51 MarkDuplicates Tracking 198573 as yet unmatched pairs. 8481 records in RAM.
INFO 2026-06-08 09:30:53 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr17:81,510,688
INFO 2026-06-08 09:30:53 MarkDuplicates Tracking 197298 as yet unmatched pairs. 7206 records in RAM.
INFO 2026-06-08 09:30:54 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr17:81,846,457
INFO 2026-06-08 09:30:54 MarkDuplicates Tracking 197749 as yet unmatched pairs. 7657 records in RAM.
INFO 2026-06-08 09:30:56 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr17:82,083,873
INFO 2026-06-08 09:30:56 MarkDuplicates Tracking 192924 as yet unmatched pairs. 2830 records in RAM.
INFO 2026-06-08 09:30:58 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 2s. Last read position: chr18:346,961
INFO 2026-06-08 09:30:58 MarkDuplicates Tracking 190273 as yet unmatched pairs. 12684 records in RAM.
INFO 2026-06-08 09:31:00 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr18:8,825,725
INFO 2026-06-08 09:31:00 MarkDuplicates Tracking 188330 as yet unmatched pairs. 10741 records in RAM.
INFO 2026-06-08 09:31:01 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr18:12,449,768
INFO 2026-06-08 09:31:01 MarkDuplicates Tracking 186931 as yet unmatched pairs. 9338 records in RAM.
INFO 2026-06-08 09:31:04 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 2s. Last read position: chr18:23,894,924
INFO 2026-06-08 09:31:04 MarkDuplicates Tracking 196644 as yet unmatched pairs. 19048 records in RAM.
INFO 2026-06-08 09:31:05 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr18:23,949,796
INFO 2026-06-08 09:31:05 MarkDuplicates Tracking 190500 as yet unmatched pairs. 12904 records in RAM.
INFO 2026-06-08 09:31:07 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 2s. Last read position: chr18:31,475,671
INFO 2026-06-08 09:31:07 MarkDuplicates Tracking 183571 as yet unmatched pairs. 5969 records in RAM.
INFO 2026-06-08 09:31:10 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 2s. Last read position: chr18:49,490,521
INFO 2026-06-08 09:31:10 MarkDuplicates Tracking 181538 as yet unmatched pairs. 3936 records in RAM.
INFO 2026-06-08 09:31:12 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr18:74,518,531
INFO 2026-06-08 09:31:12 MarkDuplicates Tracking 178509 as yet unmatched pairs. 902 records in RAM.
INFO 2026-06-08 09:31:14 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 2s. Last read position: chr19:648,187
INFO 2026-06-08 09:31:14 MarkDuplicates Tracking 177141 as yet unmatched pairs. 75472 records in RAM.
INFO 2026-06-08 09:31:16 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 2s. Last read position: chr19:1,094,012
INFO 2026-06-08 09:31:16 MarkDuplicates Tracking 174178 as yet unmatched pairs. 72508 records in RAM.
INFO 2026-06-08 09:31:18 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr19:1,467,434
INFO 2026-06-08 09:31:18 MarkDuplicates Tracking 172059 as yet unmatched pairs. 70380 records in RAM.
INFO 2026-06-08 09:31:19 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr19:2,073,328
INFO 2026-06-08 09:31:19 MarkDuplicates Tracking 170388 as yet unmatched pairs. 68709 records in RAM.
INFO 2026-06-08 09:31:21 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr19:3,056,344
INFO 2026-06-08 09:31:21 MarkDuplicates Tracking 169903 as yet unmatched pairs. 68217 records in RAM.
INFO 2026-06-08 09:31:23 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr19:4,123,798
INFO 2026-06-08 09:31:23 MarkDuplicates Tracking 165958 as yet unmatched pairs. 64272 records in RAM.
INFO 2026-06-08 09:31:24 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr19:5,212,216
INFO 2026-06-08 09:31:24 MarkDuplicates Tracking 163796 as yet unmatched pairs. 62110 records in RAM.
INFO 2026-06-08 09:31:26 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr19:6,685,074
INFO 2026-06-08 09:31:26 MarkDuplicates Tracking 161967 as yet unmatched pairs. 60281 records in RAM.
INFO 2026-06-08 09:31:28 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr19:7,740,966
INFO 2026-06-08 09:31:28 MarkDuplicates Tracking 159811 as yet unmatched pairs. 58125 records in RAM.
INFO 2026-06-08 09:31:29 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr19:9,339,188
INFO 2026-06-08 09:31:29 MarkDuplicates Tracking 157326 as yet unmatched pairs. 55640 records in RAM.
INFO 2026-06-08 09:31:32 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 2s. Last read position: chr19:10,352,438
INFO 2026-06-08 09:31:32 MarkDuplicates Tracking 155657 as yet unmatched pairs. 53971 records in RAM.
INFO 2026-06-08 09:31:34 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr19:11,060,059
INFO 2026-06-08 09:31:34 MarkDuplicates Tracking 153868 as yet unmatched pairs. 52180 records in RAM.
INFO 2026-06-08 09:31:36 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr19:12,676,050
INFO 2026-06-08 09:31:36 MarkDuplicates Tracking 151982 as yet unmatched pairs. 50294 records in RAM.
INFO 2026-06-08 09:31:37 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr19:13,075,573
INFO 2026-06-08 09:31:37 MarkDuplicates Tracking 150361 as yet unmatched pairs. 48673 records in RAM.
INFO 2026-06-08 09:31:39 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr19:14,433,475
INFO 2026-06-08 09:31:39 MarkDuplicates Tracking 148040 as yet unmatched pairs. 46351 records in RAM.
INFO 2026-06-08 09:31:41 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr19:15,115,850
INFO 2026-06-08 09:31:41 MarkDuplicates Tracking 146476 as yet unmatched pairs. 44787 records in RAM.
INFO 2026-06-08 09:31:43 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr19:15,424,364
INFO 2026-06-08 09:31:43 MarkDuplicates Tracking 144642 as yet unmatched pairs. 42953 records in RAM.
INFO 2026-06-08 09:31:44 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr19:17,215,805
INFO 2026-06-08 09:31:44 MarkDuplicates Tracking 141953 as yet unmatched pairs. 40262 records in RAM.
INFO 2026-06-08 09:31:46 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 2s. Last read position: chr19:17,942,764
INFO 2026-06-08 09:31:46 MarkDuplicates Tracking 140377 as yet unmatched pairs. 38686 records in RAM.
INFO 2026-06-08 09:31:48 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 2s. Last read position: chr19:18,573,289
INFO 2026-06-08 09:31:48 MarkDuplicates Tracking 142027 as yet unmatched pairs. 40336 records in RAM.
INFO 2026-06-08 09:31:50 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr19:19,494,345
INFO 2026-06-08 09:31:50 MarkDuplicates Tracking 136463 as yet unmatched pairs. 34772 records in RAM.
INFO 2026-06-08 09:31:52 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr19:34,394,006
INFO 2026-06-08 09:31:52 MarkDuplicates Tracking 135595 as yet unmatched pairs. 33903 records in RAM.
INFO 2026-06-08 09:31:54 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr19:35,631,353
INFO 2026-06-08 09:31:54 MarkDuplicates Tracking 132369 as yet unmatched pairs. 30677 records in RAM.
INFO 2026-06-08 09:31:55 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr19:38,304,377
INFO 2026-06-08 09:31:55 MarkDuplicates Tracking 132373 as yet unmatched pairs. 30681 records in RAM.
INFO 2026-06-08 09:31:58 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 2s. Last read position: chr19:39,380,642
INFO 2026-06-08 09:31:58 MarkDuplicates Tracking 129002 as yet unmatched pairs. 27310 records in RAM.
INFO 2026-06-08 09:32:00 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 2s. Last read position: chr19:39,905,799
INFO 2026-06-08 09:32:00 MarkDuplicates Tracking 126264 as yet unmatched pairs. 24571 records in RAM.
INFO 2026-06-08 09:32:01 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr19:41,193,390
INFO 2026-06-08 09:32:01 MarkDuplicates Tracking 124500 as yet unmatched pairs. 22807 records in RAM.
INFO 2026-06-08 09:32:03 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr19:42,086,542
INFO 2026-06-08 09:32:03 MarkDuplicates Tracking 122245 as yet unmatched pairs. 20550 records in RAM.
INFO 2026-06-08 09:32:05 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr19:42,362,471
INFO 2026-06-08 09:32:05 MarkDuplicates Tracking 120468 as yet unmatched pairs. 18772 records in RAM.
INFO 2026-06-08 09:32:06 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr19:45,179,354
INFO 2026-06-08 09:32:06 MarkDuplicates Tracking 118296 as yet unmatched pairs. 16599 records in RAM.
INFO 2026-06-08 09:32:08 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr19:45,890,873
INFO 2026-06-08 09:32:08 MarkDuplicates Tracking 116267 as yet unmatched pairs. 14570 records in RAM.
INFO 2026-06-08 09:32:09 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr19:47,725,859
INFO 2026-06-08 09:32:09 MarkDuplicates Tracking 115594 as yet unmatched pairs. 13897 records in RAM.
INFO 2026-06-08 09:32:11 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr19:48,919,113
INFO 2026-06-08 09:32:11 MarkDuplicates Tracking 112894 as yet unmatched pairs. 11197 records in RAM.
INFO 2026-06-08 09:32:13 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr19:49,524,683
INFO 2026-06-08 09:32:13 MarkDuplicates Tracking 112020 as yet unmatched pairs. 10323 records in RAM.
INFO 2026-06-08 09:32:14 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr19:49,888,610
INFO 2026-06-08 09:32:14 MarkDuplicates Tracking 108514 as yet unmatched pairs. 6817 records in RAM.
INFO 2026-06-08 09:32:16 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr19:53,824,068
INFO 2026-06-08 09:32:16 MarkDuplicates Tracking 106955 as yet unmatched pairs. 5258 records in RAM.
INFO 2026-06-08 09:32:18 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr19:55,141,856
INFO 2026-06-08 09:32:18 MarkDuplicates Tracking 105407 as yet unmatched pairs. 3710 records in RAM.
INFO 2026-06-08 09:32:20 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 2s. Last read position: chr19:57,363,601
INFO 2026-06-08 09:32:20 MarkDuplicates Tracking 102971 as yet unmatched pairs. 1274 records in RAM.
INFO 2026-06-08 09:32:22 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr20:1,372,208
INFO 2026-06-08 09:32:22 MarkDuplicates Tracking 106012 as yet unmatched pairs. 31455 records in RAM.
INFO 2026-06-08 09:32:23 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr20:3,822,210
INFO 2026-06-08 09:32:23 MarkDuplicates Tracking 99170 as yet unmatched pairs. 24613 records in RAM.
INFO 2026-06-08 09:32:25 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr20:10,672,950
INFO 2026-06-08 09:32:25 MarkDuplicates Tracking 101019 as yet unmatched pairs. 26459 records in RAM.
INFO 2026-06-08 09:32:27 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr20:23,048,074
INFO 2026-06-08 09:32:27 MarkDuplicates Tracking 97370 as yet unmatched pairs. 22810 records in RAM.
INFO 2026-06-08 09:32:29 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 2s. Last read position: chr20:32,150,809
INFO 2026-06-08 09:32:29 MarkDuplicates Tracking 94179 as yet unmatched pairs. 19619 records in RAM.
INFO 2026-06-08 09:32:31 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 2s. Last read position: chr20:35,503,125
INFO 2026-06-08 09:32:31 MarkDuplicates Tracking 91903 as yet unmatched pairs. 17343 records in RAM.
INFO 2026-06-08 09:32:33 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr20:37,236,665
INFO 2026-06-08 09:32:33 MarkDuplicates Tracking 92082 as yet unmatched pairs. 17521 records in RAM.
INFO 2026-06-08 09:32:35 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr20:44,614,629
INFO 2026-06-08 09:32:35 MarkDuplicates Tracking 88823 as yet unmatched pairs. 14259 records in RAM.
INFO 2026-06-08 09:32:37 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr20:45,898,970
INFO 2026-06-08 09:32:37 MarkDuplicates Tracking 92457 as yet unmatched pairs. 17893 records in RAM.
INFO 2026-06-08 09:32:38 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr20:47,736,903
INFO 2026-06-08 09:32:38 MarkDuplicates Tracking 87428 as yet unmatched pairs. 12861 records in RAM.
INFO 2026-06-08 09:32:40 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 2s. Last read position: chr20:50,935,127
INFO 2026-06-08 09:32:40 MarkDuplicates Tracking 83021 as yet unmatched pairs. 8453 records in RAM.
INFO 2026-06-08 09:32:42 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr20:58,905,383
INFO 2026-06-08 09:32:42 MarkDuplicates Tracking 84387 as yet unmatched pairs. 9817 records in RAM.
INFO 2026-06-08 09:32:44 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr20:62,325,315
INFO 2026-06-08 09:32:44 MarkDuplicates Tracking 80059 as yet unmatched pairs. 5482 records in RAM.
INFO 2026-06-08 09:32:45 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr20:63,564,183
INFO 2026-06-08 09:32:45 MarkDuplicates Tracking 76933 as yet unmatched pairs. 2355 records in RAM.
INFO 2026-06-08 09:32:47 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr21:6,008,646
INFO 2026-06-08 09:32:47 MarkDuplicates Tracking 74421 as yet unmatched pairs. 15908 records in RAM.
INFO 2026-06-08 09:32:48 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,428
INFO 2026-06-08 09:32:48 MarkDuplicates Tracking 74092 as yet unmatched pairs. 15578 records in RAM.
INFO 2026-06-08 09:32:50 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr21:25,975,130
INFO 2026-06-08 09:32:50 MarkDuplicates Tracking 77404 as yet unmatched pairs. 18890 records in RAM.
INFO 2026-06-08 09:32:51 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chr21:32,631,168
INFO 2026-06-08 09:32:51 MarkDuplicates Tracking 70446 as yet unmatched pairs. 11932 records in RAM.
INFO 2026-06-08 09:32:53 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr21:36,765,013
INFO 2026-06-08 09:32:53 MarkDuplicates Tracking 68710 as yet unmatched pairs. 10196 records in RAM.
INFO 2026-06-08 09:32:55 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr21:42,260,027
INFO 2026-06-08 09:32:55 MarkDuplicates Tracking 66762 as yet unmatched pairs. 8247 records in RAM.
INFO 2026-06-08 09:32:56 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr21:44,323,904
INFO 2026-06-08 09:32:56 MarkDuplicates Tracking 65980 as yet unmatched pairs. 7465 records in RAM.
INFO 2026-06-08 09:32:58 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr21:45,531,494
INFO 2026-06-08 09:32:58 MarkDuplicates Tracking 63285 as yet unmatched pairs. 4770 records in RAM.
INFO 2026-06-08 09:33:00 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 2s. Last read position: chr21:46,112,114
INFO 2026-06-08 09:33:00 MarkDuplicates Tracking 66178 as yet unmatched pairs. 7663 records in RAM.
INFO 2026-06-08 09:33:02 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr21:46,228,438
INFO 2026-06-08 09:33:02 MarkDuplicates Tracking 59866 as yet unmatched pairs. 1351 records in RAM.
INFO 2026-06-08 09:33:04 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 2s. Last read position: chr22:19,719,623
INFO 2026-06-08 09:33:04 MarkDuplicates Tracking 57575 as yet unmatched pairs. 29759 records in RAM.
INFO 2026-06-08 09:33:07 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 2s. Last read position: chr22:21,885,482
INFO 2026-06-08 09:33:07 MarkDuplicates Tracking 55432 as yet unmatched pairs. 27615 records in RAM.
INFO 2026-06-08 09:33:08 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr22:23,974,310
INFO 2026-06-08 09:33:08 MarkDuplicates Tracking 53210 as yet unmatched pairs. 25393 records in RAM.
INFO 2026-06-08 09:33:10 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chr22:29,287,117
INFO 2026-06-08 09:33:10 MarkDuplicates Tracking 53683 as yet unmatched pairs. 25866 records in RAM.
INFO 2026-06-08 09:33:11 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chr22:30,581,055
INFO 2026-06-08 09:33:11 MarkDuplicates Tracking 50067 as yet unmatched pairs. 22250 records in RAM.
INFO 2026-06-08 09:33:13 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chr22:35,386,994
INFO 2026-06-08 09:33:13 MarkDuplicates Tracking 50454 as yet unmatched pairs. 22637 records in RAM.
INFO 2026-06-08 09:33:15 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr22:36,295,591
INFO 2026-06-08 09:33:15 MarkDuplicates Tracking 50562 as yet unmatched pairs. 22744 records in RAM.
INFO 2026-06-08 09:33:17 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chr22:37,062,525
INFO 2026-06-08 09:33:17 MarkDuplicates Tracking 44351 as yet unmatched pairs. 16530 records in RAM.
INFO 2026-06-08 09:33:18 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chr22:37,925,918
INFO 2026-06-08 09:33:18 MarkDuplicates Tracking 43006 as yet unmatched pairs. 15185 records in RAM.
INFO 2026-06-08 09:33:20 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chr22:39,225,203
INFO 2026-06-08 09:33:20 MarkDuplicates Tracking 41470 as yet unmatched pairs. 13649 records in RAM.
INFO 2026-06-08 09:33:22 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chr22:41,261,560
INFO 2026-06-08 09:33:22 MarkDuplicates Tracking 38877 as yet unmatched pairs. 11055 records in RAM.
INFO 2026-06-08 09:33:23 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chr22:42,630,919
INFO 2026-06-08 09:33:23 MarkDuplicates Tracking 38614 as yet unmatched pairs. 10792 records in RAM.
INFO 2026-06-08 09:33:25 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chr22:46,364,603
INFO 2026-06-08 09:33:25 MarkDuplicates Tracking 36952 as yet unmatched pairs. 9130 records in RAM.
INFO 2026-06-08 09:33:27 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chr22:49,963,204
INFO 2026-06-08 09:33:27 MarkDuplicates Tracking 32720 as yet unmatched pairs. 4894 records in RAM.
INFO 2026-06-08 09:33:28 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chr22:50,464,879
INFO 2026-06-08 09:33:28 MarkDuplicates Tracking 31270 as yet unmatched pairs. 3444 records in RAM.
INFO 2026-06-08 09:33:30 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chrX:1,389,322
INFO 2026-06-08 09:33:30 MarkDuplicates Tracking 28708 as yet unmatched pairs. 26933 records in RAM.
INFO 2026-06-08 09:33:32 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chrX:10,567,180
INFO 2026-06-08 09:33:32 MarkDuplicates Tracking 26077 as yet unmatched pairs. 24302 records in RAM.
INFO 2026-06-08 09:33:34 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 2s. Last read position: chrX:24,060,096
INFO 2026-06-08 09:33:34 MarkDuplicates Tracking 26644 as yet unmatched pairs. 24868 records in RAM.
INFO 2026-06-08 09:33:36 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chrX:41,553,835
INFO 2026-06-08 09:33:36 MarkDuplicates Tracking 23069 as yet unmatched pairs. 21293 records in RAM.
INFO 2026-06-08 09:33:37 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chrX:47,585,207
INFO 2026-06-08 09:33:37 MarkDuplicates Tracking 27237 as yet unmatched pairs. 25461 records in RAM.
INFO 2026-06-08 09:33:39 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 1s. Last read position: chrX:48,906,495
INFO 2026-06-08 09:33:39 MarkDuplicates Tracking 20313 as yet unmatched pairs. 18537 records in RAM.
INFO 2026-06-08 09:33:42 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 2s. Last read position: chrX:53,413,417
INFO 2026-06-08 09:33:42 MarkDuplicates Tracking 18012 as yet unmatched pairs. 16236 records in RAM.
INFO 2026-06-08 09:33:44 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 1s. Last read position: chrX:65,735,297
INFO 2026-06-08 09:33:44 MarkDuplicates Tracking 17642 as yet unmatched pairs. 15866 records in RAM.
INFO 2026-06-08 09:33:45 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: chrX:74,421,866
INFO 2026-06-08 09:33:45 MarkDuplicates Tracking 14549 as yet unmatched pairs. 12773 records in RAM.
INFO 2026-06-08 09:33:47 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: chrX:103,377,720
INFO 2026-06-08 09:33:47 MarkDuplicates Tracking 13239 as yet unmatched pairs. 11463 records in RAM.
INFO 2026-06-08 09:33:49 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 1s. Last read position: chrX:118,791,793
INFO 2026-06-08 09:33:49 MarkDuplicates Tracking 11550 as yet unmatched pairs. 9774 records in RAM.
INFO 2026-06-08 09:33:50 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:25s. Time for last 1,000,000: 1s. Last read position: chrX:134,896,893
INFO 2026-06-08 09:33:50 MarkDuplicates Tracking 9397 as yet unmatched pairs. 7621 records in RAM.
INFO 2026-06-08 09:33:52 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 1s. Last read position: chrX:153,702,935
INFO 2026-06-08 09:33:52 MarkDuplicates Tracking 8316 as yet unmatched pairs. 6540 records in RAM.
INFO 2026-06-08 09:33:54 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 1s. Last read position: chrX:154,352,243
INFO 2026-06-08 09:33:54 MarkDuplicates Tracking 8434 as yet unmatched pairs. 6658 records in RAM.
INFO 2026-06-08 09:33:55 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 1s. Last read position: chrX:154,364,360
INFO 2026-06-08 09:33:55 MarkDuplicates Tracking 7244 as yet unmatched pairs. 5468 records in RAM.
INFO 2026-06-08 09:33:57 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: chrX:154,488,507
INFO 2026-06-08 09:33:57 MarkDuplicates Tracking 3057 as yet unmatched pairs. 1281 records in RAM.
INFO 2026-06-08 09:33:58 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,135
INFO 2026-06-08 09:33:58 MarkDuplicates Tracking 1003 as yet unmatched pairs. 78 records in RAM.
INFO 2026-06-08 09:34:00 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:34s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,761
INFO 2026-06-08 09:34:00 MarkDuplicates Tracking 21 as yet unmatched pairs. 2 records in RAM.
INFO 2026-06-08 09:34:00 MarkDuplicates Read 621029584 records. 0 pairs never matched.
INFO 2026-06-08 09:34:52 MarkDuplicates After buildSortedReadEndLists freeMemory: 204144232; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:34:52 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:34:55 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:34:55 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:35:10 OpticalDuplicateFinder Large duplicate set. size = 1010
INFO 2026-06-08 09:35:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,512
INFO 2026-06-08 09:35:10 OpticalDuplicateFinder Large duplicate set. size = 1058
INFO 2026-06-08 09:35:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,581
INFO 2026-06-08 09:35:12 OpticalDuplicateFinder Large duplicate set. size = 1021
INFO 2026-06-08 09:35:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,440
INFO 2026-06-08 09:36:15 OpticalDuplicateFinder Large duplicate set. size = 1105
INFO 2026-06-08 09:36:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,592
INFO 2026-06-08 09:36:21 OpticalDuplicateFinder Large duplicate set. size = 1143
INFO 2026-06-08 09:36:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,629
INFO 2026-06-08 09:36:21 OpticalDuplicateFinder Large duplicate set. size = 1519
INFO 2026-06-08 09:36:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,712
INFO 2026-06-08 09:36:21 OpticalDuplicateFinder Large duplicate set. size = 1136
INFO 2026-06-08 09:36:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,103
INFO 2026-06-08 09:36:22 OpticalDuplicateFinder Large duplicate set. size = 1056
INFO 2026-06-08 09:36:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,453
INFO 2026-06-08 09:36:22 OpticalDuplicateFinder Large duplicate set. size = 1104
INFO 2026-06-08 09:36:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,930
INFO 2026-06-08 09:36:22 OpticalDuplicateFinder Large duplicate set. size = 1874
INFO 2026-06-08 09:36:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,874
INFO 2026-06-08 09:36:22 OpticalDuplicateFinder Large duplicate set. size = 1019
INFO 2026-06-08 09:36:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,471
INFO 2026-06-08 09:36:22 OpticalDuplicateFinder Large duplicate set. size = 1190
INFO 2026-06-08 09:36:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,886
INFO 2026-06-08 09:36:22 OpticalDuplicateFinder Large duplicate set. size = 1321
INFO 2026-06-08 09:36:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,481
INFO 2026-06-08 09:36:22 OpticalDuplicateFinder Large duplicate set. size = 1035
INFO 2026-06-08 09:36:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,872
INFO 2026-06-08 09:36:22 OpticalDuplicateFinder Large duplicate set. size = 1157
INFO 2026-06-08 09:36:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,072
INFO 2026-06-08 09:36:22 OpticalDuplicateFinder Large duplicate set. size = 1036
INFO 2026-06-08 09:36:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,336
INFO 2026-06-08 09:36:22 OpticalDuplicateFinder Large duplicate set. size = 1071
INFO 2026-06-08 09:36:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,560
INFO 2026-06-08 09:36:23 OpticalDuplicateFinder Large duplicate set. size = 1239
INFO 2026-06-08 09:36:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,196
INFO 2026-06-08 09:36:23 OpticalDuplicateFinder Large duplicate set. size = 1142
INFO 2026-06-08 09:36:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,866
INFO 2026-06-08 09:36:23 OpticalDuplicateFinder Large duplicate set. size = 1218
INFO 2026-06-08 09:36:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,508
INFO 2026-06-08 09:36:23 OpticalDuplicateFinder Large duplicate set. size = 1538
INFO 2026-06-08 09:36:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,187
INFO 2026-06-08 09:36:23 OpticalDuplicateFinder Large duplicate set. size = 1794
INFO 2026-06-08 09:36:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,267
INFO 2026-06-08 09:36:24 OpticalDuplicateFinder Large duplicate set. size = 1291
INFO 2026-06-08 09:36:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,311
INFO 2026-06-08 09:36:24 OpticalDuplicateFinder Large duplicate set. size = 1284
INFO 2026-06-08 09:36:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,578
INFO 2026-06-08 09:36:24 OpticalDuplicateFinder Large duplicate set. size = 2166
INFO 2026-06-08 09:36:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,137
INFO 2026-06-08 09:36:24 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,937
INFO 2026-06-08 09:36:24 OpticalDuplicateFinder Large duplicate set. size = 1243
INFO 2026-06-08 09:36:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,850
INFO 2026-06-08 09:36:24 OpticalDuplicateFinder Large duplicate set. size = 1056
INFO 2026-06-08 09:36:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,716
INFO 2026-06-08 09:36:24 OpticalDuplicateFinder Large duplicate set. size = 1189
INFO 2026-06-08 09:36:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,919
INFO 2026-06-08 09:36:24 OpticalDuplicateFinder Large duplicate set. size = 1003
INFO 2026-06-08 09:36:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,493
INFO 2026-06-08 09:36:24 OpticalDuplicateFinder Large duplicate set. size = 1513
INFO 2026-06-08 09:36:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,769
INFO 2026-06-08 09:36:24 OpticalDuplicateFinder Large duplicate set. size = 1079
INFO 2026-06-08 09:36:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,440
INFO 2026-06-08 09:36:25 OpticalDuplicateFinder Large duplicate set. size = 1113
INFO 2026-06-08 09:36:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,650
INFO 2026-06-08 09:36:42 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:36:42 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:37:54 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:38:03 MarkDuplicates After generateDuplicateIndexes freeMemory: 203946552; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:38:03 MarkDuplicates Marking 409277014 records as duplicates.
INFO 2026-06-08 09:38:03 MarkDuplicates Found 16523050 optical duplicate clusters.
INFO 2026-06-08 09:38:03 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:38:19 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:15s. Time for last 10,000,000: 15s. Last read position: chr1:19,655,152
INFO 2026-06-08 09:38:34 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:30s. Time for last 10,000,000: 14s. Last read position: chr1:32,786,982
INFO 2026-06-08 09:38:49 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:45s. Time for last 10,000,000: 14s. Last read position: chr1:87,073,063
INFO 2026-06-08 09:39:03 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:00:59s. Time for last 10,000,000: 14s. Last read position: chr1:154,170,425
INFO 2026-06-08 09:39:17 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:14s. Time for last 10,000,000: 14s. Last read position: chr1:183,117,569
INFO 2026-06-08 09:39:32 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:28s. Time for last 10,000,000: 14s. Last read position: chr1:226,152,377
INFO 2026-06-08 09:39:46 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:43s. Time for last 10,000,000: 14s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:40:00 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:01:57s. Time for last 10,000,000: 14s. Last read position: chr2:85,327,376
INFO 2026-06-08 09:40:15 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:11s. Time for last 10,000,000: 14s. Last read position: chr2:174,229,419
INFO 2026-06-08 09:40:29 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:26s. Time for last 10,000,000: 14s. Last read position: chr2:215,372,005
INFO 2026-06-08 09:40:44 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:40s. Time for last 10,000,000: 14s. Last read position: chr2:215,433,396
INFO 2026-06-08 09:40:58 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:02:55s. Time for last 10,000,000: 14s. Last read position: chr3:30,672,101
INFO 2026-06-08 09:41:13 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:09s. Time for last 10,000,000: 14s. Last read position: chr3:64,631,865
INFO 2026-06-08 09:41:28 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:24s. Time for last 10,000,000: 14s. Last read position: chr3:150,622,475
INFO 2026-06-08 09:41:43 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:39s. Time for last 10,000,000: 14s. Last read position: chr4:6,999,089
INFO 2026-06-08 09:41:57 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:03:54s. Time for last 10,000,000: 14s. Last read position: chr4:140,657,184
INFO 2026-06-08 09:42:12 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:08s. Time for last 10,000,000: 14s. Last read position: chr5:83,539,741
INFO 2026-06-08 09:42:26 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:23s. Time for last 10,000,000: 14s. Last read position: chr5:154,811,507
INFO 2026-06-08 09:42:41 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:04:37s. Time for last 10,000,000: 14s. Last read position: chr6:29,944,328
INFO 2026-06-08 09:42:56 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:04:52s. Time for last 10,000,000: 15s. Last read position: chr6:38,677,294
INFO 2026-06-08 09:43:11 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:07s. Time for last 10,000,000: 15s. Last read position: chr6:137,878,465
INFO 2026-06-08 09:43:26 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:22s. Time for last 10,000,000: 14s. Last read position: chr7:5,529,390
INFO 2026-06-08 09:43:41 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:05:37s. Time for last 10,000,000: 14s. Last read position: chr7:55,978,188
INFO 2026-06-08 09:43:56 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:05:52s. Time for last 10,000,000: 15s. Last read position: chr7:102,506,741
INFO 2026-06-08 09:44:11 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:08s. Time for last 10,000,000: 15s. Last read position: chr8:22,570,975
INFO 2026-06-08 09:44:27 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:23s. Time for last 10,000,000: 15s. Last read position: chr8:123,041,977
INFO 2026-06-08 09:44:41 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:06:37s. Time for last 10,000,000: 14s. Last read position: chr8:144,392,495
INFO 2026-06-08 09:44:56 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:06:52s. Time for last 10,000,000: 14s. Last read position: chr9:98,944,164
INFO 2026-06-08 09:45:11 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:07s. Time for last 10,000,000: 14s. Last read position: chr9:134,768,452
INFO 2026-06-08 09:45:25 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:22s. Time for last 10,000,000: 14s. Last read position: chr10:60,198,233
INFO 2026-06-08 09:45:40 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:07:37s. Time for last 10,000,000: 14s. Last read position: chr10:104,064,549
INFO 2026-06-08 09:45:55 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:07:51s. Time for last 10,000,000: 14s. Last read position: chr11:11,933,101
INFO 2026-06-08 09:46:09 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:05s. Time for last 10,000,000: 14s. Last read position: chr11:62,525,391
INFO 2026-06-08 09:46:23 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:08:20s. Time for last 10,000,000: 14s. Last read position: chr11:67,070,531
INFO 2026-06-08 09:46:38 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:08:34s. Time for last 10,000,000: 14s. Last read position: chr11:117,206,060
INFO 2026-06-08 09:46:52 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:08:49s. Time for last 10,000,000: 14s. Last read position: chr12:10,027,669
INFO 2026-06-08 09:47:07 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:03s. Time for last 10,000,000: 14s. Last read position: chr12:52,516,665
INFO 2026-06-08 09:47:21 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:09:18s. Time for last 10,000,000: 14s. Last read position: chr12:71,663,155
INFO 2026-06-08 09:47:36 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:09:32s. Time for last 10,000,000: 14s. Last read position: chr12:131,917,021
INFO 2026-06-08 09:47:50 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:09:47s. Time for last 10,000,000: 14s. Last read position: chr14:20,456,046
INFO 2026-06-08 09:48:05 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:02s. Time for last 10,000,000: 14s. Last read position: chr14:73,739,948
INFO 2026-06-08 09:48:19 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:10:16s. Time for last 10,000,000: 14s. Last read position: chr14:105,643,622
INFO 2026-06-08 09:48:34 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:10:31s. Time for last 10,000,000: 14s. Last read position: chr15:75,400,771
INFO 2026-06-08 09:48:49 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:10:45s. Time for last 10,000,000: 14s. Last read position: chr16:14,853,594
INFO 2026-06-08 09:49:03 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:11:00s. Time for last 10,000,000: 14s. Last read position: chr16:47,155,727
INFO 2026-06-08 09:49:18 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:11:14s. Time for last 10,000,000: 14s. Last read position: chr16:88,716,644
INFO 2026-06-08 09:49:33 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:11:29s. Time for last 10,000,000: 14s. Last read position: chr17:28,633,651
INFO 2026-06-08 09:49:47 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:11:43s. Time for last 10,000,000: 14s. Last read position: chr17:42,315,737
INFO 2026-06-08 09:50:01 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:11:58s. Time for last 10,000,000: 14s. Last read position: chr17:50,189,433
INFO 2026-06-08 09:50:16 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:12:12s. Time for last 10,000,000: 14s. Last read position: chr17:50,195,964
INFO 2026-06-08 09:50:31 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:12:27s. Time for last 10,000,000: 14s. Last read position: chr17:74,204,171
INFO 2026-06-08 09:50:45 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:12:42s. Time for last 10,000,000: 14s. Last read position: chr18:8,825,725
INFO 2026-06-08 09:51:00 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:12:57s. Time for last 10,000,000: 14s. Last read position: chr19:2,073,328
INFO 2026-06-08 09:51:15 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:13:11s. Time for last 10,000,000: 14s. Last read position: chr19:13,075,573
INFO 2026-06-08 09:51:29 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:13:26s. Time for last 10,000,000: 14s. Last read position: chr19:38,304,377
INFO 2026-06-08 09:51:44 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:13:40s. Time for last 10,000,000: 14s. Last read position: chr19:49,524,683
INFO 2026-06-08 09:51:59 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:13:55s. Time for last 10,000,000: 14s. Last read position: chr20:35,503,125
INFO 2026-06-08 09:52:14 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:14:10s. Time for last 10,000,000: 14s. Last read position: chr21:8,400,428
INFO 2026-06-08 09:52:28 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:14:25s. Time for last 10,000,000: 14s. Last read position: chr22:21,885,482
INFO 2026-06-08 09:52:43 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:14:39s. Time for last 10,000,000: 14s. Last read position: chr22:42,630,919
INFO 2026-06-08 09:52:57 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:14:54s. Time for last 10,000,000: 14s. Last read position: chrX:53,413,417
INFO 2026-06-08 09:53:12 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:15:09s. Time for last 10,000,000: 14s. Last read position: GL000220.1:158,135
INFO 2026-06-08 09:53:19 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:53:19 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:53:19 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:53:19 MarkDuplicates Before output close freeMemory: 203933760; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:53:20 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:53:20 MarkDuplicates After output close freeMemory: 104158536; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:53:20 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 40.94 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory