File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/411d7acabec30490a76050d6ac914b/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:17:00
                             Started mapping on |	Jun 08 10:23:40
                                    Finished on |	Jun 08 11:31:22
       Mapping speed, Million of reads per hour |	262.24

                          Number of input reads |	295891828
                      Average input read length |	255
                                    UNIQUE READS:
                   Uniquely mapped reads number |	285160791
                        Uniquely mapped reads % |	96.37%
                          Average mapped length |	254.86
                       Number of splices: Total |	318145095
            Number of splices: Annotated (sjdb) |	313484347
                       Number of splices: GT/AG |	313986167
                       Number of splices: GC/AG |	2197797
                       Number of splices: AT/AC |	257503
               Number of splices: Non-canonical |	1703628
                      Mismatch rate per base, % |	0.20%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.15
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.62
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8165538
             % of reads mapped to multiple loci |	2.76%
        Number of reads mapped to too many loci |	350527
             % of reads mapped to too many loci |	0.12%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1907953
                 % of reads unmapped: too short |	0.64%
                Number of reads unmapped: other |	307019
                     % of reads unmapped: other |	0.10%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%