Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/b02a7396bf6caf366aae276126d7b9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/bf5e086b57d455b350c74825f3a0c5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/bf5e086b57d455b350c74825f3a0c5/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/7ae8a5a4afba700f931a84749e4ede/tih_rna_sample_00479_B23WHTKLT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/bc077b0451b14e0f9358989e078f2c/tih_rna_sample_00479_B23WHTKLT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00479_B23WHTKLT4_2.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (11915179) splicing reads. 250983 splicing junctions. 182203 known splicing junctions. 68780 novel splicing junctions.
sampling 10% (23830359) splicing reads. 308691 splicing junctions. 195678 known splicing junctions. 113013 novel splicing junctions.
sampling 15% (35745538) splicing reads. 350289 splicing junctions. 203014 known splicing junctions. 147275 novel splicing junctions.
sampling 20% (47660718) splicing reads. 383508 splicing junctions. 207919 known splicing junctions. 175589 novel splicing junctions.
sampling 25% (59575897) splicing reads. 410758 splicing junctions. 211460 known splicing junctions. 199298 novel splicing junctions.
sampling 30% (71491077) splicing reads. 434046 splicing junctions. 214259 known splicing junctions. 219787 novel splicing junctions.
sampling 35% (83406256) splicing reads. 453855 splicing junctions. 216383 known splicing junctions. 237472 novel splicing junctions.
sampling 40% (95321436) splicing reads. 471026 splicing junctions. 218138 known splicing junctions. 252888 novel splicing junctions.
sampling 45% (107236615) splicing reads. 486108 splicing junctions. 219650 known splicing junctions. 266458 novel splicing junctions.
sampling 50% (119151795) splicing reads. 499404 splicing junctions. 220879 known splicing junctions. 278525 novel splicing junctions.
sampling 55% (131066975) splicing reads. 511171 splicing junctions. 221999 known splicing junctions. 289172 novel splicing junctions.
sampling 60% (142982154) splicing reads. 521339 splicing junctions. 222949 known splicing junctions. 298390 novel splicing junctions.
sampling 65% (154897334) splicing reads. 530474 splicing junctions. 223710 known splicing junctions. 306764 novel splicing junctions.
sampling 70% (166812513) splicing reads. 538440 splicing junctions. 224362 known splicing junctions. 314078 novel splicing junctions.
sampling 75% (178727693) splicing reads. 545445 splicing junctions. 224938 known splicing junctions. 320507 novel splicing junctions.
sampling 80% (190642872) splicing reads. 551676 splicing junctions. 225407 known splicing junctions. 326269 novel splicing junctions.
sampling 85% (202558052) splicing reads. 557001 splicing junctions. 225857 known splicing junctions. 331144 novel splicing junctions.
sampling 90% (214473231) splicing reads. 561444 splicing junctions. 226197 known splicing junctions. 335247 novel splicing junctions.
sampling 95% (226388411) splicing reads. 565026 splicing junctions. 226513 known splicing junctions. 338513 novel splicing junctions.
sampling 100% (238303591) splicing reads. 568020 splicing junctions. 226754 known splicing junctions. 341266 novel splicing junctions.
null device 
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