Done.
-parsing GTF file: /tmp/nxf.nHaXGWx7pG/tih_rna_sample_00121_B23WHTKLT4_2.gtf
* Running CMD: /usr/local/bin/STAR  --runThreadN 8  --genomeDir /tmp/nxf.nHaXGWx7pG/ctat_genome_lib_build_dir/ref_genome.fa.star.idx  --outSAMtype BAM SortedByCoordinate  --twopassMode None  --alignSJDBoverhangMin 10  --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705  --alignInsertionFlush Right   --alignMatesGapMax 100000  --alignIntronMax 100000  --outSAMattributes All  --readFilesIn /tmp/nxf.nHaXGWx7pG/tih_rna_sample_00121_B23WHTKLT4_2_1.fastp.fastq.gz /tmp/nxf.nHaXGWx7pG/tih_rna_sample_00121_B23WHTKLT4_2_2.fastp.fastq.gz  --genomeFastaFiles /tmp/nxf.nHaXGWx7pG/fi_workdir/tih_rna_sample_00121_B23WHTKLT4_2.fa  --outSAMfilter KeepAllAddedReferences  --sjdbGTFfile /tmp/nxf.nHaXGWx7pG/fi_workdir/tih_rna_sample_00121_B23WHTKLT4_2.gtf  --alignSJstitchMismatchNmax 5 -1 5 5  --scoreGapNoncan -6  --readFilesCommand 'gunzip -c' 
* Running CMD: mv Aligned.sortedByCoord.out.bam tih_rna_sample_00121_B23WHTKLT4_2.star.sortedByCoord.out.bam
* Running CMD: samtools index tih_rna_sample_00121_B23WHTKLT4_2.star.sortedByCoord.out.bam
11:09:40 : INFO : Done.
-parsing GTF file: /tmp/nxf.nHaXGWx7pG/fi_workdir/tih_rna_sample_00121_B23WHTKLT4_2.gtf
-parsing /tmp/nxf.nHaXGWx7pG/fi_workdir/tih_rna_sample_00121_B23WHTKLT4_2.star.cSorted.dupsMarked.bam

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[1020000]   -done parsing /tmp/nxf.nHaXGWx7pG/fi_workdir/tih_rna_sample_00121_B23WHTKLT4_2.star.cSorted.dupsMarked.bam.  Extracting junction info.
junction read elimination tally: $VAR1 = {
          'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 110,
          'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 30,
          'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 2,
          'num genes matched < 2' => 58,
          'per_id < 96' => 3426,
          'exons hit < 2' => 6,
          'seq-similar region overlap' => 127,
          'num_hits: 6 != num_counted_on_fusion_contigs 3 ' => 27,
          'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 14,
          ' ** passed ** ' => 4068,
          'excessive soft clipping' => 7687,
          'num_hits: 4 != num_counted_on_fusion_contigs 1 ' => 1,
          'low complexity anchor region' => 6,
          'small anchor length' => 12,
          'num_hits: 5 != num_counted_on_fusion_contigs 3 ' => 3
        };
-writing fusion junction support info.
-outputting the spanning read info: /tmp/nxf.nHaXGWx7pG/fi_workdir/tih_rna_sample_00121_B23WHTKLT4_2.star.cSorted.dupsMarked.bam.fusion_spanning_info.
 - counting read alignments among fusion contigs.
-fusion SPANNING read extraction for scaff: AC016629.1--RPL23AP53

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[11000]   -fusion SPANNING read extraction for scaff: AC092807.3--DDAH1

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[14000]   -fusion SPANNING read extraction for scaff: AL512590.2--CCDC180
-fusion SPANNING read extraction for scaff: CCDC169--SOHLH2

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[20000]   -fusion SPANNING read extraction for scaff: CRYZL2P--SEC16B

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[39000]   -fusion SPANNING read extraction for scaff: CWC27--SREK1

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[43000]   -fusion SPANNING read extraction for scaff: DHX15--PCAT4

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[43000]   -fusion SPANNING read extraction for scaff: DHX15--LINC02126

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[68000]   -fusion SPANNING read extraction for scaff: DHX15--ANTXR2

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[92000]   -fusion SPANNING read extraction for scaff: DOCK9--PCCA

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[68000]   -fusion SPANNING read extraction for scaff: FSIP1--AC013652.1

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[25000]   -fusion SPANNING read extraction for scaff: HSPA4L--PWP2

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[47000]   -fusion SPANNING read extraction for scaff: INTS6--CDK8

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[43000]   -fusion SPANNING read extraction for scaff: N4BP2L2--WDR95P

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[92000]   -fusion SPANNING read extraction for scaff: PCCA--DOCK9

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[26000]   -fusion SPANNING read extraction for scaff: PCDHA11--PCDHAC2

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[30000]   -fusion SPANNING read extraction for scaff: PCDHA11--PCDHA13

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[55000]   -fusion SPANNING read extraction for scaff: RTN3--ATL3

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[16000]   -fusion SPANNING read extraction for scaff: STON1--GTF2A1L

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[95000]   -fusion SPANNING read extraction for scaff: STX16--NPEPL1

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[11000]   -fusion SPANNING read extraction for scaff: SYTL5--AL121578.1

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[30000]   -fusion SPANNING read extraction for scaff: TLK2--AC240565.1

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[5000]   -fusion SPANNING read extraction for scaff: TLK2P1--AC110079.1

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[37000]   -fusion SPANNING read extraction for scaff: TMBIM4--MSRB3

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[22000]   -fusion SPANNING read extraction for scaff: TVP23C--CDRT4

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[50000]   -fusion SPANNING read extraction for scaff: UBR3--AC078883.1
-filtered reads reasons: $VAR1 = {
          'seq similar region alignment' => 23585,
          'lacks exon overlap' => 35082
        };
EM: Starting log likelihood: -6120.588679
EM: Round [1] log likelihood: -6117.767860
EM: Round [2] log likelihood: -6116.592206
EM: Round [3] log likelihood: -6115.615239
EM: Round [4] log likelihood: -6114.791625
EM: Round [5] log likelihood: -6114.093290
EM: Round [6] log likelihood: -6113.498363
EM: Round [7] log likelihood: -6112.989497
EM: Round [8] log likelihood: -6112.552751
EM: Round [9] log likelihood: -6112.176800
EM: Round [10] log likelihood: -6111.852352
EM: Round [11] log likelihood: -6111.571726
EM: Round [12] log likelihood: -6111.328522
EM: Round [13] log likelihood: -6111.117378
EM: Round [14] log likelihood: -6110.933776
EM: Round [15] log likelihood: -6110.773890
EM: Round [16] log likelihood: -6110.634469
EM: Round [17] log likelihood: -6110.512737
EM: Round [18] log likelihood: -6110.406322
EM: Round [19] log likelihood: -6110.313185
EM: Round [20] log likelihood: -6110.231573
EM: Round [21] log likelihood: -6110.159975
EM: Round [22] log likelihood: -6110.097085
EM: Round [23] log likelihood: -6110.041775
EM: Round [24] log likelihood: -6109.993066
EM: Round [25] log likelihood: -6109.950111
EM: Round [26] log likelihood: -6109.912172
EM: Round [27] log likelihood: -6109.878610
EM: Round [28] log likelihood: -6109.848867
EM: Round [29] log likelihood: -6109.822461
EM: Round [30] log likelihood: -6109.798968
EM: Round [31] log likelihood: -6109.778021
EM: Round [32] log likelihood: -6109.759300
EM: Round [33] log likelihood: -6109.742525
EM: Round [34] log likelihood: -6109.727453
EM: Round [35] log likelihood: -6109.713871
EM: Round [36] log likelihood: -6109.701594
EM: Round [37] log likelihood: -6109.690459
EM: Round [38] log likelihood: -6109.680325
EM: Round [39] log likelihood: -6109.671068
EM: Round [40] log likelihood: -6109.662580
EM: Round [41] log likelihood: -6109.654768
EM: Round [42] log likelihood: -6109.647549
EM: Round [43] log likelihood: -6109.640851
EM: Round [44] log likelihood: -6109.634610
EM: Round [45] log likelihood: -6109.628773
EM: Round [46] log likelihood: -6109.623290
EM: Round [47] log likelihood: -6109.618120
EM: Round [48] log likelihood: -6109.613227
EM: Round [49] log likelihood: -6109.608578
EM: Round [50] log likelihood: -6109.604145
EM: Round [51] log likelihood: -6109.599903
EM: Round [52] log likelihood: -6109.595832
EM: Round [53] log likelihood: -6109.591912
EM: Round [54] log likelihood: -6109.588126
EM: Round [55] log likelihood: -6109.584461
EM: Round [56] log likelihood: -6109.580904
EM: Round [57] log likelihood: -6109.577444
EM: Round [58] log likelihood: -6109.574071
EM: Round [59] log likelihood: -6109.570777
EM: Round [60] log likelihood: -6109.567554
EM: Round [61] log likelihood: -6109.564395
EM: Round [62] log likelihood: -6109.561296
EM: Round [63] log likelihood: -6109.558251
EM: Round [64] log likelihood: -6109.555256
EM: Round [65] log likelihood: -6109.552306
EM: Round [66] log likelihood: -6109.549399
EM: Round [67] log likelihood: -6109.546531
EM: Round [68] log likelihood: -6109.543700
EM: Round [69] log likelihood: -6109.540904
EM: Round [70] log likelihood: -6109.538140
EM: Round [71] log likelihood: -6109.535406
EM: Round [72] log likelihood: -6109.532702
EM: Round [73] log likelihood: -6109.530025
EM: Round [74] log likelihood: -6109.527374
EM: Round [75] log likelihood: -6109.524749
EM: Round [76] log likelihood: -6109.522148
EM: Round [77] log likelihood: -6109.519570
EM: Round [78] log likelihood: -6109.517015
EM: Round [79] log likelihood: -6109.514481
EM: Round [80] log likelihood: -6109.511969
EM: Round [81] log likelihood: -6109.509477
EM: Round [82] log likelihood: -6109.507005
EM: Round [83] log likelihood: -6109.504552
EM: Round [84] log likelihood: -6109.502119
EM: Round [85] log likelihood: -6109.499704
EM: Round [86] log likelihood: -6109.497308
EM: Round [87] log likelihood: -6109.494929
EM: Round [88] log likelihood: -6109.492569
EM: Round [89] log likelihood: -6109.490225
EM: Round [90] log likelihood: -6109.487899
EM: Round [91] log likelihood: -6109.485589
EM: Round [92] log likelihood: -6109.483296
EM: Round [93] log likelihood: -6109.481020
EM: Round [94] log likelihood: -6109.478759
EM: Round [95] log likelihood: -6109.476514
EM: Round [96] log likelihood: -6109.474286
EM: Round [97] log likelihood: -6109.472072
EM: Round [98] log likelihood: -6109.469874
EM: Round [99] log likelihood: -6109.467692
EM: Round [100] log likelihood: -6109.465524
EM: Round [101] log likelihood: -6109.463371
EM: Round [102] log likelihood: -6109.461233
EM: Round [103] log likelihood: -6109.459110
EM: Round [104] log likelihood: -6109.457000
EM: Round [105] log likelihood: -6109.454906
EM: Round [106] log likelihood: -6109.452825
EM: Round [107] log likelihood: -6109.450758
EM: Round [108] log likelihood: -6109.448705
EM: Round [109] log likelihood: -6109.446666
EM: Round [110] log likelihood: -6109.444641
EM: Round [111] log likelihood: -6109.442629
EM: Round [112] log likelihood: -6109.440630
EM: Round [113] log likelihood: -6109.438645
EM: Round [114] log likelihood: -6109.436673
EM: Round [115] log likelihood: -6109.434714
EM: Round [116] log likelihood: -6109.432768
EM: Round [117] log likelihood: -6109.430834
EM: Round [118] log likelihood: -6109.428913
EM: Round [119] log likelihood: -6109.427005
EM: Round [120] log likelihood: -6109.425109
EM: Round [121] log likelihood: -6109.423226
EM: Round [122] log likelihood: -6109.421355
EM: Round [123] log likelihood: -6109.419496
EM: Round [124] log likelihood: -6109.417649
EM: Round [125] log likelihood: -6109.415814
EM: Round [126] log likelihood: -6109.413991
EM: Round [127] log likelihood: -6109.412179
EM: Round [128] log likelihood: -6109.410380
EM: Round [129] log likelihood: -6109.408591
EM: Round [130] log likelihood: -6109.406815
EM: Round [131] log likelihood: -6109.405049
EM: Round [132] log likelihood: -6109.403295
EM: Round [133] log likelihood: -6109.401552
EM: Round [134] log likelihood: -6109.399821
EM: Round [135] log likelihood: -6109.398100
EM: Round [136] log likelihood: -6109.396390
EM: Round [137] log likelihood: -6109.394691
EM: Round [138] log likelihood: -6109.393002
EM: Round [139] log likelihood: -6109.391325
EM: Round [140] log likelihood: -6109.389658
EM: Round [141] log likelihood: -6109.388001
EM: Round [142] log likelihood: -6109.386355
EM: Round [143] log likelihood: -6109.384719
EM: Round [144] log likelihood: -6109.383093
EM: Round [145] log likelihood: -6109.381478
EM: Round [146] log likelihood: -6109.379872
EM: Round [147] log likelihood: -6109.378277
EM: Round [148] log likelihood: -6109.376691
EM: Round [149] log likelihood: -6109.375116
EM: Round [150] log likelihood: -6109.373550
EM: Round [151] log likelihood: -6109.371993
EM: Round [152] log likelihood: -6109.370447
EM: Round [153] log likelihood: -6109.368910
EM: Round [154] log likelihood: -6109.367382
EM: Round [155] log likelihood: -6109.365864
EM: Round [156] log likelihood: -6109.364355
EM: Round [157] log likelihood: -6109.362855
EM: Round [158] log likelihood: -6109.361365
EM: Round [159] log likelihood: -6109.359884
EM: Round [160] log likelihood: -6109.358411
EM: Round [161] log likelihood: -6109.356948
EM: Round [162] log likelihood: -6109.355494
EM: Round [163] log likelihood: -6109.354048
EM: Round [164] log likelihood: -6109.352611
EM: Round [165] log likelihood: -6109.351183
EM: Round [166] log likelihood: -6109.349764
EM: Round [167] log likelihood: -6109.348353
EM: Round [168] log likelihood: -6109.346950
EM: Round [169] log likelihood: -6109.345556
EM: Round [170] log likelihood: -6109.344171
EM: Round [171] log likelihood: -6109.342794
EM: Round [172] log likelihood: -6109.341425
EM: Round [173] log likelihood: -6109.340064
EM: Round [174] log likelihood: -6109.338711
EM: Round [175] log likelihood: -6109.337367
EM: Round [176] log likelihood: -6109.336031
EM: Round [177] log likelihood: -6109.334702
EM: Round [178] log likelihood: -6109.333381
EM: Round [179] log likelihood: -6109.332069
EM: Round [180] log likelihood: -6109.330764
EM: Round [181] log likelihood: -6109.329467
EM: Round [182] log likelihood: -6109.328177
EM: Round [183] log likelihood: -6109.326895
EM: Round [184] log likelihood: -6109.325621
EM: Round [185] log likelihood: -6109.324354
EM: Round [186] log likelihood: -6109.323095
EM: Round [187] log likelihood: -6109.321843
EM: Round [188] log likelihood: -6109.320598
EM: Round [189] log likelihood: -6109.319361
EM: Round [190] log likelihood: -6109.318131
EM: Round [191] log likelihood: -6109.316908
EM: Round [192] log likelihood: -6109.315692
EM: Round [193] log likelihood: -6109.314484
EM: Round [194] log likelihood: -6109.313282
EM: Round [195] log likelihood: -6109.312088
EM: Round [196] log likelihood: -6109.310900
EM: Round [197] log likelihood: -6109.309720
EM: Round [198] log likelihood: -6109.308546
EM: Round [199] log likelihood: -6109.307379
EM: Round [200] log likelihood: -6109.306219
EM: Round [201] log likelihood: -6109.305065
EM: Round [202] log likelihood: -6109.303919
EM: Round [203] log likelihood: -6109.302778
EM: Round [204] log likelihood: -6109.301645
EM: Round [205] log likelihood: -6109.300518
EM: Round [206] log likelihood: -6109.299397
EM: Round [207] log likelihood: -6109.298283
EM: Round [208] log likelihood: -6109.297175
EM: Round [209] log likelihood: -6109.296074
EM: Round [210] log likelihood: -6109.294979
EM: Round [211] log likelihood: -6109.293890
EM: Round [212] log likelihood: -6109.292807
EM: Round [213] log likelihood: -6109.291731
EM: Round [214] log likelihood: -6109.290661
EM: Round [215] log likelihood: -6109.289596
EM: Round [216] log likelihood: -6109.288538
EM: Round [217] log likelihood: -6109.287486
EM: Round [218] log likelihood: -6109.286440
EM: Round [219] log likelihood: -6109.285400
EM: Round [220] log likelihood: -6109.284366
EM: Round [221] log likelihood: -6109.283337
EM: Round [222] log likelihood: -6109.282315
EM: Round [223] log likelihood: -6109.281298
EM: Round [224] log likelihood: -6109.280287
EM: Round [225] log likelihood: -6109.279281
EM: Round [226] log likelihood: -6109.278282
EM: Round [227] log likelihood: -6109.277288
EM: Round [228] log likelihood: -6109.276299
EM: Round [229] log likelihood: -6109.275316
EM: Round [230] log likelihood: -6109.274339
EM: Round [231] log likelihood: -6109.273367
EM: Round [232] log likelihood: -6109.272400
EM: Round [233] log likelihood: -6109.271439
EM: Round [234] log likelihood: -6109.270484
EM: Round [235] log likelihood: -6109.269533
EM: Round [236] log likelihood: -6109.268588
EM: Round [237] log likelihood: -6109.267648
EM: Round [238] log likelihood: -6109.266714
EM: Round [239] log likelihood: -6109.265784
EM: Round [240] log likelihood: -6109.264860
EM: Round [241] log likelihood: -6109.263941
EM: Round [242] log likelihood: -6109.263027
EM: Round [243] log likelihood: -6109.262118
EM: Round [244] log likelihood: -6109.261215
EM: Round [245] log likelihood: -6109.260316
EM: Round [246] log likelihood: -6109.259422
EM: Round [247] log likelihood: -6109.258533
EM: Round [248] log likelihood: -6109.257649
EM: Round [249] log likelihood: -6109.256770
EM: Round [250] log likelihood: -6109.255895
EM: Round [251] log likelihood: -6109.255026
EM: Round [252] log likelihood: -6109.254161
EM: Round [253] log likelihood: -6109.253301
EM: Round [254] log likelihood: -6109.252446
EM: Round [255] log likelihood: -6109.251595
EM: Round [256] log likelihood: -6109.250750
EM: Round [257] log likelihood: -6109.249908
EM: Round [258] log likelihood: -6109.249072
EM: Round [259] log likelihood: -6109.248240
EM: Round [260] log likelihood: -6109.247412
EM: Round [261] log likelihood: -6109.246589
EM: Round [262] log likelihood: -6109.245771
EM: Round [263] log likelihood: -6109.244957
EM: Round [264] log likelihood: -6109.244147
EM: Round [265] log likelihood: -6109.243342
EM: Round [266] log likelihood: -6109.242541
EM: Round [267] log likelihood: -6109.241745
EM: Round [268] log likelihood: -6109.240952
EM: Round [269] log likelihood: -6109.240165
EM: Round [270] log likelihood: -6109.239381
EM: Round [271] log likelihood: -6109.238602
EM: Round [272] log likelihood: -6109.237827
EM: Round [273] log likelihood: -6109.237056
EM: Round [274] log likelihood: -6109.236289
EM: Round [275] log likelihood: -6109.235526
EM: Round [276] log likelihood: -6109.234768
EM: Round [277] log likelihood: -6109.234013
EM: Round [278] log likelihood: -6109.233263
EM: Round [279] log likelihood: -6109.232517
EM: Round [280] log likelihood: -6109.231775
EM: Round [281] log likelihood: -6109.231036
EM: Round [282] log likelihood: -6109.230302
EM: Round [283] log likelihood: -6109.229572
EM: Round [284] log likelihood: -6109.228845
EM: Round [285] log likelihood: -6109.228123
EM: Round [286] log likelihood: -6109.227404
EM: Round [287] log likelihood: -6109.226689
EM: Round [288] log likelihood: -6109.225978
EM: Round [289] log likelihood: -6109.225271
EM: Round [290] log likelihood: -6109.224567
EM: Round [291] log likelihood: -6109.223868
EM: Round [292] log likelihood: -6109.223172
EM: Round [293] log likelihood: -6109.222479
EM: Round [294] log likelihood: -6109.221791
EM: Round [295] log likelihood: -6109.221106
EM: Round [296] log likelihood: -6109.220425
EM: Round [297] log likelihood: -6109.219747
EM: Round [298] log likelihood: -6109.219073
EM: Round [299] log likelihood: -6109.218403
EM: Round [300] log likelihood: -6109.217736
EM: Round [301] log likelihood: -6109.217072
EM: Round [302] log likelihood: -6109.216413
EM: Round [303] log likelihood: -6109.215756
EM: Round [304] log likelihood: -6109.215103
EM: Round [305] log likelihood: -6109.214454
EM: Round [306] log likelihood: -6109.213808
EM: Round [307] log likelihood: -6109.213166
EM: Round [308] log likelihood: -6109.212526
EM: Round [309] log likelihood: -6109.211891
EM: Round [310] log likelihood: -6109.211258
EM: Round [311] log likelihood: -6109.210629
EM: Round [312] log likelihood: -6109.210003
EM: Round [313] log likelihood: -6109.209381
EM: Round [314] log likelihood: -6109.208761
EM: Round [315] log likelihood: -6109.208145
EM: Round [316] log likelihood: -6109.207533
EM: Round [317] log likelihood: -6109.206923
EM: Round [318] log likelihood: -6109.206317
EM: Round [319] log likelihood: -6109.205714
EM: Round [320] log likelihood: -6109.205114
EM: Round [321] log likelihood: -6109.204517
EM: Round [322] log likelihood: -6109.203923
EM: Round [323] log likelihood: -6109.203332
EM: Round [324] log likelihood: -6109.202745
EM: Round [325] log likelihood: -6109.202160
EM: Round [326] log likelihood: -6109.201579
EM: Round [327] log likelihood: -6109.201001
EM: Round [328] log likelihood: -6109.200425
EM: Round [329] log likelihood: -6109.199853
EM: Round [330] log likelihood: -6109.199284
EM: Round [331] log likelihood: -6109.198717
EM: Round [332] log likelihood: -6109.198154
EM: Round [333] log likelihood: -6109.197593
EM: Round [334] log likelihood: -6109.197036
EM: Round [335] log likelihood: -6109.196481
EM: Round [336] log likelihood: -6109.195929
EM: Round [337] log likelihood: -6109.195380
EM: Round [338] log likelihood: -6109.194834
EM: Round [339] log likelihood: -6109.194291
EM: Round [340] log likelihood: -6109.193750
EM: Round [341] log likelihood: -6109.193212
EM: Round [342] log likelihood: -6109.192678
EM: Round [343] log likelihood: -6109.192145
EM: Round [344] log likelihood: -6109.191616
EM: Round [345] log likelihood: -6109.191089
EM: Round [346] log likelihood: -6109.190565
EM: Round [347] log likelihood: -6109.190044
EM: Round [348] log likelihood: -6109.189526
EM: Round [349] log likelihood: -6109.189010
EM: Round [350] log likelihood: -6109.188497
EM: Round [351] log likelihood: -6109.187986
EM: Round [352] log likelihood: -6109.187478
EM: Round [353] log likelihood: -6109.186973
EM: Round [354] log likelihood: -6109.186470
EM: Round [355] log likelihood: -6109.185970
EM: Round [356] log likelihood: -6109.185472
EM: Round [357] log likelihood: -6109.184977
EM: Round [358] log likelihood: -6109.184485
EM: Round [359] log likelihood: -6109.183995
EM: Round [360] log likelihood: -6109.183508
EM: Round [361] log likelihood: -6109.183023
EM: Round [362] log likelihood: -6109.182540
EM: Round [363] log likelihood: -6109.182060
EM: Round [364] log likelihood: -6109.181583
EM: Round [365] log likelihood: -6109.181108
EM: Round [366] log likelihood: -6109.180635
EM: Round [367] log likelihood: -6109.180165
EM: Round [368] log likelihood: -6109.179697
EM: Round [369] log likelihood: -6109.179232
EM: Round [370] log likelihood: -6109.178769
EM: Round [371] log likelihood: -6109.178308
EM: Round [372] log likelihood: -6109.177850
EM: Round [373] log likelihood: -6109.177394
EM: Round [374] log likelihood: -6109.176940
EM: Round [375] log likelihood: -6109.176488
EM: Round [376] log likelihood: -6109.176039
EM: Round [377] log likelihood: -6109.175593
EM: Round [378] log likelihood: -6109.175148
EM: Round [379] log likelihood: -6109.174706
EM: Round [380] log likelihood: -6109.174266
EM: Round [381] log likelihood: -6109.173828
EM: Round [382] log likelihood: -6109.173393
EM: Round [383] log likelihood: -6109.172959
EM: Round [384] log likelihood: -6109.172528
EM: Round [385] log likelihood: -6109.172099
EM: Round [386] log likelihood: -6109.171672
EM: Round [387] log likelihood: -6109.171248
EM: Round [388] log likelihood: -6109.170825
EM: Round [389] log likelihood: -6109.170405
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EM: Round [394] log likelihood: -6109.168335
EM: Round [395] log likelihood: -6109.167927
EM: Round [396] log likelihood: -6109.167522
EM: Round [397] log likelihood: -6109.167118
EM: Round [398] log likelihood: -6109.166716
EM: Round [399] log likelihood: -6109.166317
EM: Round [400] log likelihood: -6109.165919
EM: Round [401] log likelihood: -6109.165524
EM: Round [402] log likelihood: -6109.165130
EM: Round [403] log likelihood: -6109.164739
EM: Round [404] log likelihood: -6109.164349
EM: Round [405] log likelihood: -6109.163961
EM: Round [406] log likelihood: -6109.163576
EM: Round [407] log likelihood: -6109.163192
EM: Round [408] log likelihood: -6109.162810
EM: Round [409] log likelihood: -6109.162430
EM: Round [410] log likelihood: -6109.162052
EM: Round [411] log likelihood: -6109.161676
EM: Round [412] log likelihood: -6109.161302
EM: Round [413] log likelihood: -6109.160930
EM: Round [414] log likelihood: -6109.160559
EM: Round [415] log likelihood: -6109.160191
EM: Round [416] log likelihood: -6109.159824
EM: Round [417] log likelihood: -6109.159459
EM: Round [418] log likelihood: -6109.159096
EM: Round [419] log likelihood: -6109.158734
EM: Round [420] log likelihood: -6109.158375
EM: Round [421] log likelihood: -6109.158017
EM: Round [422] log likelihood: -6109.157661
EM: Round [423] log likelihood: -6109.157307
EM: Round [424] log likelihood: -6109.156955
EM: Round [425] log likelihood: -6109.156604
EM: Round [426] log likelihood: -6109.156256
EM: Round [427] log likelihood: -6109.155908
EM: Round [428] log likelihood: -6109.155563
EM: Round [429] log likelihood: -6109.155219
EM: Round [430] log likelihood: -6109.154878
EM: Round [431] log likelihood: -6109.154537
EM: Round [432] log likelihood: -6109.154199
EM: Round [433] log likelihood: -6109.153862
EM: Round [434] log likelihood: -6109.153527
EM: Round [435] log likelihood: -6109.153193
EM: Round [436] log likelihood: -6109.152861
EM: Round [437] log likelihood: -6109.152531
EM: Round [438] log likelihood: -6109.152203
EM: Round [439] log likelihood: -6109.151876
EM: Round [440] log likelihood: -6109.151551
EM: Round [441] log likelihood: -6109.151227
EM: Round [442] log likelihood: -6109.150905
EM: Round [443] log likelihood: -6109.150584
EM: Round [444] log likelihood: -6109.150265
EM: Round [445] log likelihood: -6109.149948
EM: Round [446] log likelihood: -6109.149632
EM: Round [447] log likelihood: -6109.149318
EM: Round [448] log likelihood: -6109.149006
EM: Round [449] log likelihood: -6109.148695
EM: Round [450] log likelihood: -6109.148385
EM: Round [451] log likelihood: -6109.148077
EM: Round [452] log likelihood: -6109.147771
EM: Round [453] log likelihood: -6109.147466
EM: Round [454] log likelihood: -6109.147162
EM: Round [455] log likelihood: -6109.146861
EM: Round [456] log likelihood: -6109.146560
EM: Round [457] log likelihood: -6109.146261
EM: Round [458] log likelihood: -6109.145964
EM: Round [459] log likelihood: -6109.145668
EM: Round [460] log likelihood: -6109.145373
EM: Round [461] log likelihood: -6109.145080
EM: Round [462] log likelihood: -6109.144788
EM: Round [463] log likelihood: -6109.144498
EM: Round [464] log likelihood: -6109.144210
EM: Round [465] log likelihood: -6109.143922
EM: Round [466] log likelihood: -6109.143636
EM: Round [467] log likelihood: -6109.143352
EM: Round [468] log likelihood: -6109.143069
EM: Round [469] log likelihood: -6109.142787
EM: Round [470] log likelihood: -6109.142507
EM: Round [471] log likelihood: -6109.142228
EM: Round [472] log likelihood: -6109.141950
EM: Round [473] log likelihood: -6109.141674
EM: Round [474] log likelihood: -6109.141399
EM: Round [475] log likelihood: -6109.141126
EM: Round [476] log likelihood: -6109.140853
EM: Round [477] log likelihood: -6109.140583
EM: Round [478] log likelihood: -6109.140313
EM: Round [479] log likelihood: -6109.140045
EM: Round [480] log likelihood: -6109.139778
EM: Round [481] log likelihood: -6109.139513
EM: Round [482] log likelihood: -6109.139248
EM: Round [483] log likelihood: -6109.138985
EM: Round [484] log likelihood: -6109.138724
EM: Round [485] log likelihood: -6109.138464
EM: Round [486] log likelihood: -6109.138204
EM: Round [487] log likelihood: -6109.137947
EM: Round [488] log likelihood: -6109.137690
EM: Round [489] log likelihood: -6109.137435
EM: Round [490] log likelihood: -6109.137181
EM: Round [491] log likelihood: -6109.136928
EM: Round [492] log likelihood: -6109.136676
EM: Round [493] log likelihood: -6109.136426
EM: Round [494] log likelihood: -6109.136177
EM: Round [495] log likelihood: -6109.135929
EM: Round [496] log likelihood: -6109.135682
EM: Round [497] log likelihood: -6109.135437
EM: Round [498] log likelihood: -6109.135193
EM: Round [499] log likelihood: -6109.134950
EM: Round [500] log likelihood: -6109.134708
EM: Round [501] log likelihood: -6109.134467
EM: Round [502] log likelihood: -6109.134228
EM: Round [503] log likelihood: -6109.133989
EM: Round [504] log likelihood: -6109.133752
EM: Round [505] log likelihood: -6109.133516
EM: Round [506] log likelihood: -6109.133281
EM: Round [507] log likelihood: -6109.133047
EM: Round [508] log likelihood: -6109.132815
EM: Round [509] log likelihood: -6109.132583
EM: Round [510] log likelihood: -6109.132353
EM: Round [511] log likelihood: -6109.132124
EM: Round [512] log likelihood: -6109.131896
EM: Round [513] log likelihood: -6109.131669
EM: Round [514] log likelihood: -6109.131443
EM: Round [515] log likelihood: -6109.131218
EM: Round [516] log likelihood: -6109.130995
EM: Round [517] log likelihood: -6109.130772
EM: Round [518] log likelihood: -6109.130550
EM: Round [519] log likelihood: -6109.130330
EM: Round [520] log likelihood: -6109.130111
EM: Round [521] log likelihood: -6109.129892
EM: Round [522] log likelihood: -6109.129675
EM: Round [523] log likelihood: -6109.129459
EM: Round [524] log likelihood: -6109.129244
EM: Round [525] log likelihood: -6109.129030
EM: Round [526] log likelihood: -6109.128817
EM: Round [527] log likelihood: -6109.128605
EM: Round [528] log likelihood: -6109.128394
EM: Round [529] log likelihood: -6109.128184
EM: Round [530] log likelihood: -6109.127975
EM: Round [531] log likelihood: -6109.127767
EM: Round [532] log likelihood: -6109.127560
EM: Round [533] log likelihood: -6109.127354
EM: Round [534] log likelihood: -6109.127149
EM: Round [535] log likelihood: -6109.126946
EM: Round [536] log likelihood: -6109.126743
EM: Round [537] log likelihood: -6109.126541
EM: Round [538] log likelihood: -6109.126340
EM: Round [539] log likelihood: -6109.126140
EM: Round [540] log likelihood: -6109.125941
EM: Round [541] log likelihood: -6109.125743
EM: Round [542] log likelihood: -6109.125546
EM: Round [543] log likelihood: -6109.125350
EM: Round [544] log likelihood: -6109.125154
EM: Round [545] log likelihood: -6109.124960
EM: Round [546] log likelihood: -6109.124767
EM: Round [547] log likelihood: -6109.124575
EM: Round [548] log likelihood: -6109.124383
EM: Round [549] log likelihood: -6109.124193
EM: Round [550] log likelihood: -6109.124003
EM: Round [551] log likelihood: -6109.123814
EM: Round [552] log likelihood: -6109.123627
EM: Round [553] log likelihood: -6109.123440
EM: Round [554] log likelihood: -6109.123254
EM: Round [555] log likelihood: -6109.123069
EM: Round [556] log likelihood: -6109.122885
EM: Round [557] log likelihood: -6109.122701
EM: Round [558] log likelihood: -6109.122519
EM: Round [559] log likelihood: -6109.122338
EM: Round [560] log likelihood: -6109.122157
EM: Round [561] log likelihood: -6109.121977
EM: Round [562] log likelihood: -6109.121798
EM: Round [563] log likelihood: -6109.121620
EM: Round [564] log likelihood: -6109.121443
EM: Round [565] log likelihood: -6109.121267
EM: Round [566] log likelihood: -6109.121091
EM: Round [567] log likelihood: -6109.120917
EM: Round [568] log likelihood: -6109.120743
EM: Round [569] log likelihood: -6109.120570
EM: Round [570] log likelihood: -6109.120398
EM: Round [571] log likelihood: -6109.120227
EM: Round [572] log likelihood: -6109.120056
EM: Round [573] log likelihood: -6109.119887
EM: Round [574] log likelihood: -6109.119718
EM: Round [575] log likelihood: -6109.119550
EM: Round [576] log likelihood: -6109.119383
EM: Round [577] log likelihood: -6109.119216
EM: Round [578] log likelihood: -6109.119051
EM: Round [579] log likelihood: -6109.118886
EM: Round [580] log likelihood: -6109.118722
EM: Round [581] log likelihood: -6109.118559
EM: Round [582] log likelihood: -6109.118396
EM: Round [583] log likelihood: -6109.118235
EM: Round [584] log likelihood: -6109.118074
EM: Round [585] log likelihood: -6109.117914
EM: Round [586] log likelihood: -6109.117755
EM: Round [587] log likelihood: -6109.117596
EM: Round [588] log likelihood: -6109.117438
EM: Round [589] log likelihood: -6109.117281
EM: Round [590] log likelihood: -6109.117125
EM: Round [591] log likelihood: -6109.116969
EM: Round [592] log likelihood: -6109.116815
EM: Round [593] log likelihood: -6109.116661
EM: Round [594] log likelihood: -6109.116507
EM: Round [595] log likelihood: -6109.116355
EM: Round [596] log likelihood: -6109.116203
EM: Round [597] log likelihood: -6109.116052
EM: Round [598] log likelihood: -6109.115902
EM: Round [599] log likelihood: -6109.115752
EM: Round [600] log likelihood: -6109.115603
EM: Round [601] log likelihood: -6109.115455
EM: Round [602] log likelihood: -6109.115307
EM: Round [603] log likelihood: -6109.115161
EM: Round [604] log likelihood: -6109.115014
EM: Round [605] log likelihood: -6109.114869
EM: Round [606] log likelihood: -6109.114724
EM: Round [607] log likelihood: -6109.114580
EM: Round [608] log likelihood: -6109.114437
EM: Round [609] log likelihood: -6109.114294
EM: Round [610] log likelihood: -6109.114152
EM: Round [611] log likelihood: -6109.114011
EM: Round [612] log likelihood: -6109.113871
EM: Round [613] log likelihood: -6109.113731
EM: Round [614] log likelihood: -6109.113591
EM: Round [615] log likelihood: -6109.113453
EM: Round [616] log likelihood: -6109.113315
EM: Round [617] log likelihood: -6109.113178
EM: Round [618] log likelihood: -6109.113041
EM: Round [619] log likelihood: -6109.112905
EM: Round [620] log likelihood: -6109.112770
EM: Round [621] log likelihood: -6109.112635
EM: Round [622] log likelihood: -6109.112501
EM: Round [623] log likelihood: -6109.112368
EM: Round [624] log likelihood: -6109.112235
EM: Round [625] log likelihood: -6109.112103
EM: Round [626] log likelihood: -6109.111972
EM: Round [627] log likelihood: -6109.111841
EM: Round [628] log likelihood: -6109.111711
EM: Round [629] log likelihood: -6109.111581
EM: Round [630] log likelihood: -6109.111452
EM: Round [631] log likelihood: -6109.111324
EM: Round [632] log likelihood: -6109.111196
EM: Round [633] log likelihood: -6109.111069
EM: Round [634] log likelihood: -6109.110942
EM: Round [635] log likelihood: -6109.110816
EM: Round [636] log likelihood: -6109.110691
EM: Round [637] log likelihood: -6109.110566
EM: Round [638] log likelihood: -6109.110442
EM: Round [639] log likelihood: -6109.110319
EM: Round [640] log likelihood: -6109.110196
EM: Round [641] log likelihood: -6109.110073
EM: Round [642] log likelihood: -6109.109952
EM: Round [643] log likelihood: -6109.109831
EM: Round [644] log likelihood: -6109.109710
EM: Round [645] log likelihood: -6109.109590
EM: Round [646] log likelihood: -6109.109470
EM: Round [647] log likelihood: -6109.109352
EM: Round [648] log likelihood: -6109.109233
EM: Round [649] log likelihood: -6109.109115
EM: Round [650] log likelihood: -6109.108998
EM: Round [651] log likelihood: -6109.108882
EM: Round [652] log likelihood: -6109.108766
EM: Round [653] log likelihood: -6109.108650
EM: Round [654] log likelihood: -6109.108535
EM: Round [655] log likelihood: -6109.108421
EM: Round [656] log likelihood: -6109.108307
EM: Round [657] log likelihood: -6109.108193
EM: Round [658] log likelihood: -6109.108081
EM: Round [659] log likelihood: -6109.107968
EM: Round [660] log likelihood: -6109.107857
EM: Round [661] log likelihood: -6109.107745
EM: Round [662] log likelihood: -6109.107635
EM: Round [663] log likelihood: -6109.107525
EM: Round [664] log likelihood: -6109.107415
EM: Round [665] log likelihood: -6109.107306
EM: Round [666] log likelihood: -6109.107197
EM: Round [667] log likelihood: -6109.107089
EM: Round [668] log likelihood: -6109.106982
EM: Round [669] log likelihood: -6109.106875
EM: Round [670] log likelihood: -6109.106768
EM: Round [671] log likelihood: -6109.106662
EM: Round [672] log likelihood: -6109.106556
EM: Round [673] log likelihood: -6109.106451
EM: Round [674] log likelihood: -6109.106347
EM: Round [675] log likelihood: -6109.106243
EM: Round [676] log likelihood: -6109.106139
EM: Round [677] log likelihood: -6109.106036
EM: Round [678] log likelihood: -6109.105934
EM: Round [679] log likelihood: -6109.105832
EM: Round [680] log likelihood: -6109.105730
EM: Round [681] log likelihood: -6109.105629
EM: Round [682] log likelihood: -6109.105528
EM: Round [683] log likelihood: -6109.105428
EM: Round [684] log likelihood: -6109.105329
EM: Stopping iterations at round 684 due to insufficient improvement in likelihood.
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
-extracting read coordinates from /tmp/nxf.nHaXGWx7pG/tih_rna_sample_00121_B23WHTKLT4_2.consolidated.bam into /tmp/nxf.nHaXGWx7pG/tih_rna_sample_00121_B23WHTKLT4_2.consolidated.bam.read_coords

CMD: touch /tmp/nxf.nHaXGWx7pG/tih_rna_sample_00121_B23WHTKLT4_2.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.nHaXGWx7pG/tih_rna_sample_00121_B23WHTKLT4_2.consolidated.bam.read_coords > /tmp/nxf.nHaXGWx7pG/tih_rna_sample_00121_B23WHTKLT4_2.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.nHaXGWx7pG/tih_rna_sample_00121_B23WHTKLT4_2.consolidated.bam.frag_coords > /tmp/nxf.nHaXGWx7pG/tih_rna_sample_00121_B23WHTKLT4_2.consolidated.bam.frag_coords.coord_sorted
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.nHaXGWx7pG/fi_workdir/tih_rna_sample_00121_B23WHTKLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.nHaXGWx7pG/fi_workdir/tih_rna_sample_00121_B23WHTKLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter  --genome_lib_dir ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 50 
CMD: cp /tmp/nxf.nHaXGWx7pG/fi_workdir/tih_rna_sample_00121_B23WHTKLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.nHaXGWx7pG/tih_rna_sample_00121_B23WHTKLT4_2.post_blast_and_promiscuity_filter
-done, see /tmp/nxf.nHaXGWx7pG/tih_rna_sample_00121_B23WHTKLT4_2.post_blast_and_promiscuity_filter.annot_filter.pass
EM: Starting log likelihood: -5945.398021
EM: Round [1] log likelihood: -5944.539804
EM: Round [2] log likelihood: -5944.526635
EM: Round [3] log likelihood: -5944.522031
EM: Round [4] log likelihood: -5944.517558
EM: Round [5] log likelihood: -5944.513126
EM: Round [6] log likelihood: -5944.508734
EM: Round [7] log likelihood: -5944.504382
EM: Round [8] log likelihood: -5944.500069
EM: Round [9] log likelihood: -5944.495794
EM: Round [10] log likelihood: -5944.491557
EM: Round [11] log likelihood: -5944.487357
EM: Round [12] log likelihood: -5944.483195
EM: Round [13] log likelihood: -5944.479069
EM: Round [14] log likelihood: -5944.474979
EM: Round [15] log likelihood: -5944.470924
EM: Round [16] log likelihood: -5944.466905
EM: Round [17] log likelihood: -5944.462921
EM: Round [18] log likelihood: -5944.458970
EM: Round [19] log likelihood: -5944.455054
EM: Round [20] log likelihood: -5944.451170
EM: Round [21] log likelihood: -5944.447320
EM: Round [22] log likelihood: -5944.443503
EM: Round [23] log likelihood: -5944.439717
EM: Round [24] log likelihood: -5944.435964
EM: Round [25] log likelihood: -5944.432241
EM: Round [26] log likelihood: -5944.428550
EM: Round [27] log likelihood: -5944.424889
EM: Round [28] log likelihood: -5944.421259
EM: Round [29] log likelihood: -5944.417659
EM: Round [30] log likelihood: -5944.414088
EM: Round [31] log likelihood: -5944.410546
EM: Round [32] log likelihood: -5944.407034
EM: Round [33] log likelihood: -5944.403550
EM: Round [34] log likelihood: -5944.400094
EM: Round [35] log likelihood: -5944.396666
EM: Round [36] log likelihood: -5944.393265
EM: Round [37] log likelihood: -5944.389892
EM: Round [38] log likelihood: -5944.386546
EM: Round [39] log likelihood: -5944.383226
EM: Round [40] log likelihood: -5944.379933
EM: Round [41] log likelihood: -5944.376666
EM: Round [42] log likelihood: -5944.373424
EM: Round [43] log likelihood: -5944.370208
EM: Round [44] log likelihood: -5944.367017
EM: Round [45] log likelihood: -5944.363851
EM: Round [46] log likelihood: -5944.360710
EM: Round [47] log likelihood: -5944.357593
EM: Round [48] log likelihood: -5944.354501
EM: Round [49] log likelihood: -5944.351432
EM: Round [50] log likelihood: -5944.348387
EM: Round [51] log likelihood: -5944.345365
EM: Round [52] log likelihood: -5944.342366
EM: Round [53] log likelihood: -5944.339390
EM: Round [54] log likelihood: -5944.336436
EM: Round [55] log likelihood: -5944.333505
EM: Round [56] log likelihood: -5944.330597
EM: Round [57] log likelihood: -5944.327710
EM: Round [58] log likelihood: -5944.324844
EM: Round [59] log likelihood: -5944.322001
EM: Round [60] log likelihood: -5944.319178
EM: Round [61] log likelihood: -5944.316376
EM: Round [62] log likelihood: -5944.313596
EM: Round [63] log likelihood: -5944.310836
EM: Round [64] log likelihood: -5944.308096
EM: Round [65] log likelihood: -5944.305376
EM: Round [66] log likelihood: -5944.302677
EM: Round [67] log likelihood: -5944.299997
EM: Round [68] log likelihood: -5944.297336
EM: Round [69] log likelihood: -5944.294696
EM: Round [70] log likelihood: -5944.292074
EM: Round [71] log likelihood: -5944.289471
EM: Round [72] log likelihood: -5944.286887
EM: Round [73] log likelihood: -5944.284322
EM: Round [74] log likelihood: -5944.281775
EM: Round [75] log likelihood: -5944.279247
EM: Round [76] log likelihood: -5944.276736
EM: Round [77] log likelihood: -5944.274244
EM: Round [78] log likelihood: -5944.271769
EM: Round [79] log likelihood: -5944.269312
EM: Round [80] log likelihood: -5944.266872
EM: Round [81] log likelihood: -5944.264449
EM: Round [82] log likelihood: -5944.262044
EM: Round [83] log likelihood: -5944.259655
EM: Round [84] log likelihood: -5944.257284
EM: Round [85] log likelihood: -5944.254928
EM: Round [86] log likelihood: -5944.252590
EM: Round [87] log likelihood: -5944.250267
EM: Round [88] log likelihood: -5944.247961
EM: Round [89] log likelihood: -5944.245671
EM: Round [90] log likelihood: -5944.243396
EM: Round [91] log likelihood: -5944.241138
EM: Round [92] log likelihood: -5944.238894
EM: Round [93] log likelihood: -5944.236667
EM: Round [94] log likelihood: -5944.234454
EM: Round [95] log likelihood: -5944.232257
EM: Round [96] log likelihood: -5944.230074
EM: Round [97] log likelihood: -5944.227907
EM: Round [98] log likelihood: -5944.225754
EM: Round [99] log likelihood: -5944.223616
EM: Round [100] log likelihood: -5944.221493
EM: Round [101] log likelihood: -5944.219383
EM: Round [102] log likelihood: -5944.217288
EM: Round [103] log likelihood: -5944.215207
EM: Round [104] log likelihood: -5944.213140
EM: Round [105] log likelihood: -5944.211087
EM: Round [106] log likelihood: -5944.209048
EM: Round [107] log likelihood: -5944.207022
EM: Round [108] log likelihood: -5944.205009
EM: Round [109] log likelihood: -5944.203010
EM: Round [110] log likelihood: -5944.201025
EM: Round [111] log likelihood: -5944.199052
EM: Round [112] log likelihood: -5944.197093
EM: Round [113] log likelihood: -5944.195146
EM: Round [114] log likelihood: -5944.193212
EM: Round [115] log likelihood: -5944.191291
EM: Round [116] log likelihood: -5944.189383
EM: Round [117] log likelihood: -5944.187487
EM: Round [118] log likelihood: -5944.185603
EM: Round [119] log likelihood: -5944.183732
EM: Round [120] log likelihood: -5944.181872
EM: Round [121] log likelihood: -5944.180025
EM: Round [122] log likelihood: -5944.178190
EM: Round [123] log likelihood: -5944.176367
EM: Round [124] log likelihood: -5944.174555
EM: Round [125] log likelihood: -5944.172756
EM: Round [126] log likelihood: -5944.170967
EM: Round [127] log likelihood: -5944.169191
EM: Round [128] log likelihood: -5944.167425
EM: Round [129] log likelihood: -5944.165671
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EM: Round [588] log likelihood: -5943.879810
EM: Round [589] log likelihood: -5943.879656
EM: Round [590] log likelihood: -5943.879503
EM: Round [591] log likelihood: -5943.879350
EM: Round [592] log likelihood: -5943.879198
EM: Round [593] log likelihood: -5943.879047
EM: Round [594] log likelihood: -5943.878896
EM: Round [595] log likelihood: -5943.878746
EM: Round [596] log likelihood: -5943.878597
EM: Round [597] log likelihood: -5943.878449
EM: Round [598] log likelihood: -5943.878301
EM: Round [599] log likelihood: -5943.878154
EM: Round [600] log likelihood: -5943.878008
EM: Round [601] log likelihood: -5943.877862
EM: Round [602] log likelihood: -5943.877717
EM: Round [603] log likelihood: -5943.877573
EM: Round [604] log likelihood: -5943.877430
EM: Round [605] log likelihood: -5943.877287
EM: Round [606] log likelihood: -5943.877145
EM: Round [607] log likelihood: -5943.877004
EM: Round [608] log likelihood: -5943.876863
EM: Round [609] log likelihood: -5943.876723
EM: Round [610] log likelihood: -5943.876583
EM: Round [611] log likelihood: -5943.876445
EM: Round [612] log likelihood: -5943.876306
EM: Round [613] log likelihood: -5943.876169
EM: Round [614] log likelihood: -5943.876032
EM: Round [615] log likelihood: -5943.875896
EM: Round [616] log likelihood: -5943.875761
EM: Round [617] log likelihood: -5943.875626
EM: Round [618] log likelihood: -5943.875492
EM: Round [619] log likelihood: -5943.875358
EM: Round [620] log likelihood: -5943.875225
EM: Round [621] log likelihood: -5943.875093
EM: Round [622] log likelihood: -5943.874962
EM: Round [623] log likelihood: -5943.874831
EM: Round [624] log likelihood: -5943.874700
EM: Round [625] log likelihood: -5943.874571
EM: Round [626] log likelihood: -5943.874441
EM: Round [627] log likelihood: -5943.874313
EM: Round [628] log likelihood: -5943.874185
EM: Round [629] log likelihood: -5943.874058
EM: Round [630] log likelihood: -5943.873931
EM: Round [631] log likelihood: -5943.873805
EM: Round [632] log likelihood: -5943.873680
EM: Round [633] log likelihood: -5943.873555
EM: Round [634] log likelihood: -5943.873431
EM: Round [635] log likelihood: -5943.873307
EM: Round [636] log likelihood: -5943.873184
EM: Round [637] log likelihood: -5943.873061
EM: Round [638] log likelihood: -5943.872939
EM: Round [639] log likelihood: -5943.872818
EM: Round [640] log likelihood: -5943.872697
EM: Round [641] log likelihood: -5943.872577
EM: Round [642] log likelihood: -5943.872458
EM: Round [643] log likelihood: -5943.872339
EM: Round [644] log likelihood: -5943.872220
EM: Round [645] log likelihood: -5943.872102
EM: Round [646] log likelihood: -5943.871985
EM: Round [647] log likelihood: -5943.871868
EM: Round [648] log likelihood: -5943.871752
EM: Round [649] log likelihood: -5943.871636
EM: Round [650] log likelihood: -5943.871521
EM: Round [651] log likelihood: -5943.871407
EM: Round [652] log likelihood: -5943.871293
EM: Round [653] log likelihood: -5943.871179
EM: Round [654] log likelihood: -5943.871066
EM: Round [655] log likelihood: -5943.870954
EM: Round [656] log likelihood: -5943.870842
EM: Round [657] log likelihood: -5943.870731
EM: Round [658] log likelihood: -5943.870620
EM: Round [659] log likelihood: -5943.870510
EM: Round [660] log likelihood: -5943.870400
EM: Round [661] log likelihood: -5943.870291
EM: Round [662] log likelihood: -5943.870182
EM: Round [663] log likelihood: -5943.870074
EM: Round [664] log likelihood: -5943.869966
EM: Round [665] log likelihood: -5943.869859
EM: Round [666] log likelihood: -5943.869752
EM: Round [667] log likelihood: -5943.869646
EM: Round [668] log likelihood: -5943.869541
EM: Round [669] log likelihood: -5943.869436
EM: Round [670] log likelihood: -5943.869331
EM: Round [671] log likelihood: -5943.869227
EM: Round [672] log likelihood: -5943.869123
EM: Round [673] log likelihood: -5943.869020
EM: Round [674] log likelihood: -5943.868917
EM: Round [675] log likelihood: -5943.868815
EM: Round [676] log likelihood: -5943.868714
EM: Round [677] log likelihood: -5943.868612
EM: Round [678] log likelihood: -5943.868512
EM: Round [679] log likelihood: -5943.868411
EM: Round [680] log likelihood: -5943.868312
EM: Stopping iterations at round 680 due to insufficient improvement in likelihood.
-total frags in /tmp/nxf.nHaXGWx7pG/tih_rna_sample_00121_B23WHTKLT4_2_1.fastp.fastq.gz: 296153839
Warning - not locating file: /tmp/nxf.nHaXGWx7pG/tih_rna_sample_00121_B23WHTKLT4_2.gmap_trinity_GG.fusions.gff3.bed
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000251321.1]
WARNING, no entry stored in dbm for [ENSG00000251321.1]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
WARNING, no entry stored in dbm for [ENSG00000259847.2]
WARNING, no entry stored in dbm for [ENSG00000225205.5]
WARNING, no entry stored in dbm for [ENSG00000242193.11]
WARNING, no entry stored in dbm for [ENSG00000242193.11]
WARNING, no entry stored in dbm for [ENSG00000269032.1]
WARNING, no entry stored in dbm for [ENSG00000223508.5]
WARNING, no entry stored in dbm for [ENSG00000269032.1]
WARNING, no entry stored in dbm for [ENSG00000223508.5]
WARNING, no entry stored in dbm for [ENSG00000254633.2]
WARNING, no entry stored in dbm for [ENSG00000254633.2]
WARNING, no entry stored in dbm for [ENSG00000254633.2]
WARNING, no entry stored in dbm for [ENSG00000259977.1]
WARNING, no entry stored in dbm for [ENSG00000259977.1]
ls: cannot access 'IGV_inputs': No such file or directory