[W::hts_idx_load3] The index file is older than the data file: 659_cIX-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	347489977
Known Splicing Events:	344853315
Partial Novel Splicing Events:	1653344
Novel Splicing Events:	855855
Filtered Splicing Events:	127463

Total splicing  Junctions:	407859
Known Splicing Junctions:	238403
Partial Novel Splicing Junctions:	95470
Novel Splicing Junctions:	73986

===================================================================
Create BED file ...
Create Interact file ...