Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/9718430fe20a6a2af4bd92330716eb/659_cIX-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/b02a7396bf6caf366aae276126d7b9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/a57a90e2ad9a5e02ef080a1c3b69ef/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/a57a90e2ad9a5e02ef080a1c3b69ef/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/3aaf6df0c0e98be6b29aefdbd497da/659_cIX-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 347489977
[W::hts_idx_load3] The index file is older than the data file: 659_cIX-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	347489977
Known Splicing Events:	344853315
Partial Novel Splicing Events:	1653344
Novel Splicing Events:	855855
Filtered Splicing Events:	127463

Total splicing  Junctions:	407859
Known Splicing Junctions:	238403
Partial Novel Splicing Junctions:	95470
Novel Splicing Junctions:	73986

===================================================================
Create BED file ...
Create Interact file ...