AIH curated blacklist: matched 2 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 50
Pass (FILTER=PASS): 4 (8.0%)
Fail (FILTER=FAIL): 46 (92.0%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 2
All 2 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 20
confidence_below_min(medium<high): 5
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 3
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 3
confidence_below_min(medium<high);aih_curated_blacklist: 2
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 2
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 2
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 2
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 2
confidence_below_min(low<high): 1
total_reads_below_min(4.0<8.0): 1
total_reads_below_min(3.0<8.0): 1
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 1
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 1
Breakdown by confidence:
high: 4 pass, 2 fail (total: 6)
low: 0 pass, 14 fail (total: 14)
medium: 0 pass, 30 fail (total: 30)
Arriba filter: 50 rows -> 4 PASS; wrote 659_Mt-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered.tsv and 659_Mt-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: 659_Mt-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filter_summary.txt