Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/b02a7396bf6caf366aae276126d7b9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/ba69c5f86c97a607aad1dddd99420c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/ba69c5f86c97a607aad1dddd99420c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/5d86c571d8d65606cf6effcf4c5a87/659_bCu-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/905f81b694194f2e4c2cae1840a5a2/659_bCu-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 57672184
[W::hts_idx_load3] The index file is older than the data file: 659_bCu-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	57672184
Known Splicing Events:	57087450
Partial Novel Splicing Events:	351396
Novel Splicing Events:	202794
Filtered Splicing Events:	30544

Total splicing  Junctions:	157492
Known Splicing Junctions:	138452
Partial Novel Splicing Junctions:	10431
Novel Splicing Junctions:	8609

===================================================================
Create BED file ...
Create Interact file ...