File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/2350313aacdb7f9dddf77f6b019f3f/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:58:47
                             Started mapping on |	Jun 08 08:05:03
                                    Finished on |	Jun 08 08:13:50
       Mapping speed, Million of reads per hour |	327.35

                          Number of input reads |	47921027
                      Average input read length |	228
                                    UNIQUE READS:
                   Uniquely mapped reads number |	45550080
                        Uniquely mapped reads % |	95.05%
                          Average mapped length |	228.00
                       Number of splices: Total |	36951429
            Number of splices: Annotated (sjdb) |	36264702
                       Number of splices: GT/AG |	36358905
                       Number of splices: GC/AG |	292438
                       Number of splices: AT/AC |	25224
               Number of splices: Non-canonical |	274862
                      Mismatch rate per base, % |	0.53%
                         Deletion rate per base |	0.04%
                        Deletion average length |	2.15
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.66
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	1825677
             % of reads mapped to multiple loci |	3.81%
        Number of reads mapped to too many loci |	108458
             % of reads mapped to too many loci |	0.23%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	368312
                 % of reads unmapped: too short |	0.77%
                Number of reads unmapped: other |	68500
                     % of reads unmapped: other |	0.14%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%