.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_BAMSTAT (tih_rna_sample_00467_B23WHTKLT4_2)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/31c38e8bf4b63a2579530122f54770/.command.sh
Size: 421 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_BAMSTAT (tih_rna_sample_00467_B23WHTKLT4_2)
Attempt

Content

#!/bin/bash -euo pipefail
bam_stat.py \
    -i tih_rna_sample_00467_B23WHTKLT4_2.Aligned.sortedByCoord.out.bam tih_rna_sample_00467_B23WHTKLT4_2.Aligned.sortedByCoord.out.bam.bai \
     \
    > tih_rna_sample_00467_B23WHTKLT4_2.bam_stat.txt

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_BAMSTAT":
    rseqc: $(bam_stat.py --version | sed -e "s/bam_stat.py //g")
END_VERSIONS