Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/1c1e0580102b42cac59f8883e5047c/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/1c1e0580102b42cac59f8883e5047c/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/blacklist_breakpoint_database_2026-04-27.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/2f4c2b08c256182221bca8dc29f84c/tih_rna_sample_00461_B23WHTKLT4_1.arriba.fusions.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-99ebc9bd-f9f1-4b2c-b9a0-02ddaf99f257/ee/adda01b2d23fdd27de06edfd21ea26/arriba_filter_config.yaml
==> STAGING COMPLETE (5 inputs)
AIH curated blacklist: matched 0 fusion rows (breakpoint_ID in qualified set)
================================================================================
ARRIBA FILTERING SUMMARY
================================================================================
Total fusions: 47
Pass (FILTER=PASS): 2 (4.3%)
Fail (FILTER=FAIL): 45 (95.7%)
Failure reasons (top 15):
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 11
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 5
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 5
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 4
total_reads_below_min(4.0<8.0): 3
total_reads_below_min(3.0<8.0): 3
total_reads_below_min(2.0<8.0): 3
total_reads_below_min(5.0<8.0): 2
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 2
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 1
confidence_below_min(low<high): 1
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 1
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 1
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 1
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 1
Breakdown by confidence:
high: 2 pass, 11 fail (total: 13)
low: 0 pass, 22 fail (total: 22)
medium: 0 pass, 12 fail (total: 12)
Arriba filter: 47 rows -> 2 PASS; wrote tih_rna_sample_00461_B23WHTKLT4_1.arriba.fusions.filtered.tsv and tih_rna_sample_00461_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: tih_rna_sample_00461_B23WHTKLT4_1.arriba.fusions.filter_summary.txt