Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/9d130904f6d70eb1f8a2d201078066/659_bua-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/b02a7396bf6caf366aae276126d7b9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/d9e0530a363c0b79e0f524085dba5e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/d9e0530a363c0b79e0f524085dba5e/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/425fbf5ce7bb2fa3d66c7b64e48711/659_bua-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bua-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (16030711) splicing reads. 241677 splicing junctions. 171701 known splicing junctions. 69976 novel splicing junctions.
sampling 10% (32061423) splicing reads. 283480 splicing junctions. 181505 known splicing junctions. 101975 novel splicing junctions.
sampling 15% (48092135) splicing reads. 307667 splicing junctions. 186232 known splicing junctions. 121435 novel splicing junctions.
sampling 20% (64122847) splicing reads. 323670 splicing junctions. 188807 known splicing junctions. 134863 novel splicing junctions.
sampling 25% (80153559) splicing reads. 335117 splicing junctions. 190566 known splicing junctions. 144551 novel splicing junctions.
sampling 30% (96184271) splicing reads. 343770 splicing junctions. 191849 known splicing junctions. 151921 novel splicing junctions.
sampling 35% (112214982) splicing reads. 350439 splicing junctions. 192798 known splicing junctions. 157641 novel splicing junctions.
sampling 40% (128245694) splicing reads. 355742 splicing junctions. 193503 known splicing junctions. 162239 novel splicing junctions.
sampling 45% (144276406) splicing reads. 360085 splicing junctions. 194065 known splicing junctions. 166020 novel splicing junctions.
sampling 50% (160307118) splicing reads. 363612 splicing junctions. 194542 known splicing junctions. 169070 novel splicing junctions.
sampling 55% (176337830) splicing reads. 366597 splicing junctions. 194949 known splicing junctions. 171648 novel splicing junctions.
sampling 60% (192368542) splicing reads. 369140 splicing junctions. 195250 known splicing junctions. 173890 novel splicing junctions.
sampling 65% (208399254) splicing reads. 371307 splicing junctions. 195526 known splicing junctions. 175781 novel splicing junctions.
sampling 70% (224429965) splicing reads. 373138 splicing junctions. 195752 known splicing junctions. 177386 novel splicing junctions.
sampling 75% (240460677) splicing reads. 374617 splicing junctions. 195955 known splicing junctions. 178662 novel splicing junctions.
sampling 80% (256491389) splicing reads. 375919 splicing junctions. 196096 known splicing junctions. 179823 novel splicing junctions.
sampling 85% (272522101) splicing reads. 376982 splicing junctions. 196218 known splicing junctions. 180764 novel splicing junctions.
sampling 90% (288552813) splicing reads. 377858 splicing junctions. 196312 known splicing junctions. 181546 novel splicing junctions.
sampling 95% (304583525) splicing reads. 378572 splicing junctions. 196389 known splicing junctions. 182183 novel splicing junctions.
sampling 100% (320614237) splicing reads. 379069 splicing junctions. 196448 known splicing junctions. 182621 novel splicing junctions.
null device 
          1