Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/a68132163eaab556bbad88a9841379/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/3186538808ab4521ac8e5a8dcba6e2/tih_rna_sample_00461_B23WHTKLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/a7b4d6af15a071f68eac9c4e8259d3/tih_rna_sample_00461_B23WHTKLT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/a68132163eaab556bbad88a9841379/.command.run
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00461_B23WHTKLT4_2.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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