Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/04c4c44ea17fe7421b72d5f28c777c/659_cfy-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/b02a7396bf6caf366aae276126d7b9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/d3d5945b101bb7553c343684ef0585/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/d3d5945b101bb7553c343684ef0585/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/596dc83cd135ae3e53e2e69434618e/659_cfy-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 361502058
[W::hts_idx_load3] The index file is older than the data file: 659_cfy-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	361502058
Known Splicing Events:	358593885
Partial Novel Splicing Events:	1523377
Novel Splicing Events:	1222216
Filtered Splicing Events:	162580

Total splicing  Junctions:	486507
Known Splicing Junctions:	252319
Partial Novel Splicing Junctions:	113188
Novel Splicing Junctions:	121000

===================================================================
Create BED file ...
Create Interact file ...