File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/df640d38a71176e302d2f2dbad4f4b/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:58:41
                             Started mapping on |	Jun 08 10:05:02
                                    Finished on |	Jun 08 10:57:12
       Mapping speed, Million of reads per hour |	338.59

                          Number of input reads |	294385985
                      Average input read length |	243
                                    UNIQUE READS:
                   Uniquely mapped reads number |	279397693
                        Uniquely mapped reads % |	94.91%
                          Average mapped length |	242.90
                       Number of splices: Total |	284342050
            Number of splices: Annotated (sjdb) |	279161303
                       Number of splices: GT/AG |	280252630
                       Number of splices: GC/AG |	2017975
                       Number of splices: AT/AC |	193972
               Number of splices: Non-canonical |	1877473
                      Mismatch rate per base, % |	0.29%
                         Deletion rate per base |	0.04%
                        Deletion average length |	2.17
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.78
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	10991376
             % of reads mapped to multiple loci |	3.73%
        Number of reads mapped to too many loci |	1000977
             % of reads mapped to too many loci |	0.34%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2487443
                 % of reads unmapped: too short |	0.84%
                Number of reads unmapped: other |	508496
                     % of reads unmapped: other |	0.17%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%