Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/4678714b8e162a7dbf4c6cced3c370/659_bQZ-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/05ae2c8aac62198e89964a2963bfa3/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/05ae2c8aac62198e89964a2963bfa3/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bQZ-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bQZ-T1-TRNA-1_B23WHTKLT4_1.md.bam --METRICS_FILE 659_bQZ-T1-TRNA-1_B23WHTKLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
09:03:17.165 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 09:03:17 GMT 2026] MarkDuplicates --INPUT 659_bQZ-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bQZ-T1-TRNA-1_B23WHTKLT4_1.md.bam --METRICS_FILE 659_bQZ-T1-TRNA-1_B23WHTKLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 09:03:17 GMT 2026] Executing as ?@nf-f905ae2c8aac62198e89964a2963bfa3-753e5-xw479 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 09:03:17 MarkDuplicates Start of doWork freeMemory: 105494424; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 09:03:17 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 09:03:17 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 09:03:21 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,336,085
INFO 2026-06-08 09:03:21 MarkDuplicates Tracking 2537 as yet unmatched pairs. 485 records in RAM.
INFO 2026-06-08 09:03:23 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:1,790,578
INFO 2026-06-08 09:03:23 MarkDuplicates Tracking 5222 as yet unmatched pairs. 1204 records in RAM.
INFO 2026-06-08 09:03:25 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 2s. Last read position: chr1:6,461,587
INFO 2026-06-08 09:03:25 MarkDuplicates Tracking 6571 as yet unmatched pairs. 524 records in RAM.
INFO 2026-06-08 09:03:28 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:9,733,929
INFO 2026-06-08 09:03:28 MarkDuplicates Tracking 8058 as yet unmatched pairs. 430 records in RAM.
INFO 2026-06-08 09:03:29 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:11,960,722
INFO 2026-06-08 09:03:29 MarkDuplicates Tracking 10240 as yet unmatched pairs. 830 records in RAM.
INFO 2026-06-08 09:03:31 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:16,051,037
INFO 2026-06-08 09:03:31 MarkDuplicates Tracking 11077 as yet unmatched pairs. 147 records in RAM.
INFO 2026-06-08 09:03:33 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:19,093,421
INFO 2026-06-08 09:03:33 MarkDuplicates Tracking 13121 as yet unmatched pairs. 481 records in RAM.
INFO 2026-06-08 09:03:35 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:20,661,299
INFO 2026-06-08 09:03:35 MarkDuplicates Tracking 14326 as yet unmatched pairs. 61 records in RAM.
INFO 2026-06-08 09:03:37 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:21,850,041
INFO 2026-06-08 09:03:37 MarkDuplicates Tracking 17043 as yet unmatched pairs. 1034 records in RAM.
INFO 2026-06-08 09:03:39 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 2s. Last read position: chr1:22,865,107
INFO 2026-06-08 09:03:39 MarkDuplicates Tracking 17643 as yet unmatched pairs. 103 records in RAM.
INFO 2026-06-08 09:03:41 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:25,835,294
INFO 2026-06-08 09:03:41 MarkDuplicates Tracking 19025 as yet unmatched pairs. 102 records in RAM.
INFO 2026-06-08 09:03:44 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:27,353,453
INFO 2026-06-08 09:03:44 MarkDuplicates Tracking 21227 as yet unmatched pairs. 757 records in RAM.
INFO 2026-06-08 09:03:46 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 2s. Last read position: chr1:31,423,706
INFO 2026-06-08 09:03:46 MarkDuplicates Tracking 23515 as yet unmatched pairs. 1173 records in RAM.
INFO 2026-06-08 09:03:48 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:32,330,838
INFO 2026-06-08 09:03:48 MarkDuplicates Tracking 24460 as yet unmatched pairs. 556 records in RAM.
INFO 2026-06-08 09:03:50 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:35,192,563
INFO 2026-06-08 09:03:50 MarkDuplicates Tracking 28650 as yet unmatched pairs. 3130 records in RAM.
INFO 2026-06-08 09:03:52 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:37,794,142
INFO 2026-06-08 09:03:52 MarkDuplicates Tracking 27196 as yet unmatched pairs. 82 records in RAM.
INFO 2026-06-08 09:03:53 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:40,222,619
INFO 2026-06-08 09:03:53 MarkDuplicates Tracking 28755 as yet unmatched pairs. 115 records in RAM.
INFO 2026-06-08 09:03:55 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:43,453,424
INFO 2026-06-08 09:03:55 MarkDuplicates Tracking 30511 as yet unmatched pairs. 200 records in RAM.
INFO 2026-06-08 09:03:57 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:45,334,443
INFO 2026-06-08 09:03:57 MarkDuplicates Tracking 32320 as yet unmatched pairs. 157 records in RAM.
INFO 2026-06-08 09:03:58 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:47,765,850
INFO 2026-06-08 09:03:58 MarkDuplicates Tracking 33668 as yet unmatched pairs. 92 records in RAM.
INFO 2026-06-08 09:04:00 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:55,046,590
INFO 2026-06-08 09:04:00 MarkDuplicates Tracking 36208 as yet unmatched pairs. 864 records in RAM.
INFO 2026-06-08 09:04:02 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:68,194,165
INFO 2026-06-08 09:04:02 MarkDuplicates Tracking 37078 as yet unmatched pairs. 215 records in RAM.
INFO 2026-06-08 09:04:03 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:89,060,217
INFO 2026-06-08 09:04:03 MarkDuplicates Tracking 38621 as yet unmatched pairs. 396 records in RAM.
INFO 2026-06-08 09:04:05 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:102,890,460
INFO 2026-06-08 09:04:05 MarkDuplicates Tracking 40449 as yet unmatched pairs. 838 records in RAM.
INFO 2026-06-08 09:04:07 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:112,456,773
INFO 2026-06-08 09:04:07 MarkDuplicates Tracking 41172 as yet unmatched pairs. 235 records in RAM.
INFO 2026-06-08 09:04:09 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:116,389,605
INFO 2026-06-08 09:04:09 MarkDuplicates Tracking 44156 as yet unmatched pairs. 1772 records in RAM.
INFO 2026-06-08 09:04:11 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 2s. Last read position: chr1:119,916,498
INFO 2026-06-08 09:04:11 MarkDuplicates Tracking 44757 as yet unmatched pairs. 1066 records in RAM.
INFO 2026-06-08 09:04:14 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 2s. Last read position: chr1:145,233,200
INFO 2026-06-08 09:04:14 MarkDuplicates Tracking 44777 as yet unmatched pairs. 73 records in RAM.
INFO 2026-06-08 09:04:15 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:148,572,506
INFO 2026-06-08 09:04:15 MarkDuplicates Tracking 45472 as yet unmatched pairs. 74 records in RAM.
INFO 2026-06-08 09:04:17 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:149,851,155
INFO 2026-06-08 09:04:17 MarkDuplicates Tracking 46758 as yet unmatched pairs. 386 records in RAM.
INFO 2026-06-08 09:04:19 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:150,578,856
INFO 2026-06-08 09:04:19 MarkDuplicates Tracking 49509 as yet unmatched pairs. 2066 records in RAM.
INFO 2026-06-08 09:04:21 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 2s. Last read position: chr1:151,761,483
INFO 2026-06-08 09:04:21 MarkDuplicates Tracking 49264 as yet unmatched pairs. 228 records in RAM.
INFO 2026-06-08 09:04:23 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:154,157,610
INFO 2026-06-08 09:04:23 MarkDuplicates Tracking 56553 as yet unmatched pairs. 6229 records in RAM.
INFO 2026-06-08 09:04:25 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:154,970,078
INFO 2026-06-08 09:04:25 MarkDuplicates Tracking 52167 as yet unmatched pairs. 322 records in RAM.
INFO 2026-06-08 09:04:26 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:155,192,209
INFO 2026-06-08 09:04:26 MarkDuplicates Tracking 53846 as yet unmatched pairs. 551 records in RAM.
INFO 2026-06-08 09:04:28 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:156,019,954
INFO 2026-06-08 09:04:28 MarkDuplicates Tracking 55369 as yet unmatched pairs. 605 records in RAM.
INFO 2026-06-08 09:04:30 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:156,176,774
INFO 2026-06-08 09:04:30 MarkDuplicates Tracking 56969 as yet unmatched pairs. 253 records in RAM.
INFO 2026-06-08 09:04:31 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:159,931,475
INFO 2026-06-08 09:04:31 MarkDuplicates Tracking 58552 as yet unmatched pairs. 206 records in RAM.
INFO 2026-06-08 09:04:33 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:161,526,235
INFO 2026-06-08 09:04:33 MarkDuplicates Tracking 60240 as yet unmatched pairs. 306 records in RAM.
INFO 2026-06-08 09:04:35 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:169,111,403
INFO 2026-06-08 09:04:35 MarkDuplicates Tracking 65304 as yet unmatched pairs. 3977 records in RAM.
INFO 2026-06-08 09:04:36 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:178,094,669
INFO 2026-06-08 09:04:36 MarkDuplicates Tracking 62975 as yet unmatched pairs. 240 records in RAM.
INFO 2026-06-08 09:04:38 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:183,207,948
INFO 2026-06-08 09:04:38 MarkDuplicates Tracking 64664 as yet unmatched pairs. 304 records in RAM.
INFO 2026-06-08 09:04:40 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:197,218,142
INFO 2026-06-08 09:04:40 MarkDuplicates Tracking 65722 as yet unmatched pairs. 23 records in RAM.
INFO 2026-06-08 09:04:41 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:202,013,002
INFO 2026-06-08 09:04:41 MarkDuplicates Tracking 69382 as yet unmatched pairs. 1969 records in RAM.
INFO 2026-06-08 09:04:43 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:204,411,316
INFO 2026-06-08 09:04:43 MarkDuplicates Tracking 69684 as yet unmatched pairs. 819 records in RAM.
INFO 2026-06-08 09:04:45 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:207,062,665
INFO 2026-06-08 09:04:45 MarkDuplicates Tracking 70558 as yet unmatched pairs. 336 records in RAM.
INFO 2026-06-08 09:04:46 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:214,330,963
INFO 2026-06-08 09:04:46 MarkDuplicates Tracking 71715 as yet unmatched pairs. 48 records in RAM.
INFO 2026-06-08 09:04:48 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:225,403,289
INFO 2026-06-08 09:04:48 MarkDuplicates Tracking 73385 as yet unmatched pairs. 262 records in RAM.
INFO 2026-06-08 09:04:49 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:228,273,879
INFO 2026-06-08 09:04:49 MarkDuplicates Tracking 74921 as yet unmatched pairs. 86 records in RAM.
INFO 2026-06-08 09:04:51 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:234,608,682
INFO 2026-06-08 09:04:51 MarkDuplicates Tracking 78640 as yet unmatched pairs. 1665 records in RAM.
INFO 2026-06-08 09:04:53 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:244,864,083
INFO 2026-06-08 09:04:53 MarkDuplicates Tracking 80706 as yet unmatched pairs. 2069 records in RAM.
INFO 2026-06-08 09:04:55 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 2s. Last read position: chr2:9,400,024
INFO 2026-06-08 09:04:55 MarkDuplicates Tracking 80453 as yet unmatched pairs. 80204 records in RAM.
INFO 2026-06-08 09:04:56 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr2:20,203,969
INFO 2026-06-08 09:04:56 MarkDuplicates Tracking 82776 as yet unmatched pairs. 82522 records in RAM.
INFO 2026-06-08 09:04:59 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 2s. Last read position: chr2:27,079,137
INFO 2026-06-08 09:04:59 MarkDuplicates Tracking 83845 as yet unmatched pairs. 83586 records in RAM.
INFO 2026-06-08 09:05:01 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr2:28,412,207
INFO 2026-06-08 09:05:01 MarkDuplicates Tracking 85899 as yet unmatched pairs. 85639 records in RAM.
INFO 2026-06-08 09:05:02 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,260
INFO 2026-06-08 09:05:02 MarkDuplicates Tracking 131135 as yet unmatched pairs. 83626 records in RAM.
INFO 2026-06-08 09:05:04 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:05:04 MarkDuplicates Tracking 704954 as yet unmatched pairs. 58010 records in RAM.
INFO 2026-06-08 09:05:06 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:05:06 MarkDuplicates Tracking 772753 as yet unmatched pairs. 55207 records in RAM.
INFO 2026-06-08 09:05:07 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:42,048,787
INFO 2026-06-08 09:05:07 MarkDuplicates Tracking 820938 as yet unmatched pairs. 52673 records in RAM.
INFO 2026-06-08 09:05:09 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr2:46,375,719
INFO 2026-06-08 09:05:09 MarkDuplicates Tracking 818760 as yet unmatched pairs. 50489 records in RAM.
INFO 2026-06-08 09:05:11 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr2:54,630,019
INFO 2026-06-08 09:05:11 MarkDuplicates Tracking 818203 as yet unmatched pairs. 49929 records in RAM.
INFO 2026-06-08 09:05:13 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 2s. Last read position: chr2:61,214,293
INFO 2026-06-08 09:05:13 MarkDuplicates Tracking 815668 as yet unmatched pairs. 47393 records in RAM.
INFO 2026-06-08 09:05:15 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:69,788,086
INFO 2026-06-08 09:05:15 MarkDuplicates Tracking 814649 as yet unmatched pairs. 46371 records in RAM.
INFO 2026-06-08 09:05:18 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 2s. Last read position: chr2:74,088,000
INFO 2026-06-08 09:05:18 MarkDuplicates Tracking 812536 as yet unmatched pairs. 44253 records in RAM.
INFO 2026-06-08 09:05:20 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 2s. Last read position: chr2:79,121,988
INFO 2026-06-08 09:05:20 MarkDuplicates Tracking 814786 as yet unmatched pairs. 46500 records in RAM.
INFO 2026-06-08 09:05:21 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:86,770,029
INFO 2026-06-08 09:05:21 MarkDuplicates Tracking 809499 as yet unmatched pairs. 41213 records in RAM.
INFO 2026-06-08 09:05:23 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:96,277,120
INFO 2026-06-08 09:05:23 MarkDuplicates Tracking 808791 as yet unmatched pairs. 40502 records in RAM.
INFO 2026-06-08 09:05:25 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:101,002,702
INFO 2026-06-08 09:05:25 MarkDuplicates Tracking 808453 as yet unmatched pairs. 40159 records in RAM.
INFO 2026-06-08 09:05:27 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:108,746,750
INFO 2026-06-08 09:05:27 MarkDuplicates Tracking 806558 as yet unmatched pairs. 38263 records in RAM.
INFO 2026-06-08 09:05:28 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:109,831,350
INFO 2026-06-08 09:05:28 MarkDuplicates Tracking 804327 as yet unmatched pairs. 36031 records in RAM.
INFO 2026-06-08 09:05:30 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:113,132,743
INFO 2026-06-08 09:05:30 MarkDuplicates Tracking 803585 as yet unmatched pairs. 35274 records in RAM.
INFO 2026-06-08 09:05:31 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:127,636,239
INFO 2026-06-08 09:05:31 MarkDuplicates Tracking 802639 as yet unmatched pairs. 34310 records in RAM.
INFO 2026-06-08 09:05:33 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:136,115,791
INFO 2026-06-08 09:05:33 MarkDuplicates Tracking 800669 as yet unmatched pairs. 32319 records in RAM.
INFO 2026-06-08 09:05:34 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:162,005,777
INFO 2026-06-08 09:05:34 MarkDuplicates Tracking 799530 as yet unmatched pairs. 31170 records in RAM.
INFO 2026-06-08 09:05:36 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:174,229,425
INFO 2026-06-08 09:05:36 MarkDuplicates Tracking 798056 as yet unmatched pairs. 29684 records in RAM.
INFO 2026-06-08 09:05:38 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:182,981,321
INFO 2026-06-08 09:05:38 MarkDuplicates Tracking 796372 as yet unmatched pairs. 27993 records in RAM.
INFO 2026-06-08 09:05:40 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:188,996,162
INFO 2026-06-08 09:05:40 MarkDuplicates Tracking 798775 as yet unmatched pairs. 30396 records in RAM.
INFO 2026-06-08 09:05:42 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:189,008,050
INFO 2026-06-08 09:05:42 MarkDuplicates Tracking 796727 as yet unmatched pairs. 28348 records in RAM.
INFO 2026-06-08 09:05:44 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 2s. Last read position: chr2:190,974,851
INFO 2026-06-08 09:05:44 MarkDuplicates Tracking 791832 as yet unmatched pairs. 23453 records in RAM.
INFO 2026-06-08 09:05:45 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:201,160,851
INFO 2026-06-08 09:05:45 MarkDuplicates Tracking 789660 as yet unmatched pairs. 21275 records in RAM.
INFO 2026-06-08 09:05:47 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:210,590,144
INFO 2026-06-08 09:05:47 MarkDuplicates Tracking 787978 as yet unmatched pairs. 19586 records in RAM.
INFO 2026-06-08 09:05:49 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 2s. Last read position: chr2:215,372,127
INFO 2026-06-08 09:05:49 MarkDuplicates Tracking 799362 as yet unmatched pairs. 30969 records in RAM.
INFO 2026-06-08 09:05:50 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:215,380,823
INFO 2026-06-08 09:05:50 MarkDuplicates Tracking 797618 as yet unmatched pairs. 29225 records in RAM.
INFO 2026-06-08 09:05:52 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:215,397,791
INFO 2026-06-08 09:05:52 MarkDuplicates Tracking 786494 as yet unmatched pairs. 18101 records in RAM.
INFO 2026-06-08 09:05:54 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:215,410,063
INFO 2026-06-08 09:05:54 MarkDuplicates Tracking 789059 as yet unmatched pairs. 20666 records in RAM.
INFO 2026-06-08 09:05:56 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:215,431,875
INFO 2026-06-08 09:05:56 MarkDuplicates Tracking 790157 as yet unmatched pairs. 21764 records in RAM.
INFO 2026-06-08 09:05:57 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:217,848,359
INFO 2026-06-08 09:05:57 MarkDuplicates Tracking 780643 as yet unmatched pairs. 12242 records in RAM.
INFO 2026-06-08 09:05:59 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:219,220,818
INFO 2026-06-08 09:05:59 MarkDuplicates Tracking 778698 as yet unmatched pairs. 10296 records in RAM.
INFO 2026-06-08 09:06:01 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:222,558,362
INFO 2026-06-08 09:06:01 MarkDuplicates Tracking 776738 as yet unmatched pairs. 8336 records in RAM.
INFO 2026-06-08 09:06:03 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 2s. Last read position: chr2:231,455,573
INFO 2026-06-08 09:06:03 MarkDuplicates Tracking 776345 as yet unmatched pairs. 7932 records in RAM.
INFO 2026-06-08 09:06:05 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:234,496,429
INFO 2026-06-08 09:06:05 MarkDuplicates Tracking 773846 as yet unmatched pairs. 5433 records in RAM.
INFO 2026-06-08 09:06:07 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:237,381,021
INFO 2026-06-08 09:06:07 MarkDuplicates Tracking 773237 as yet unmatched pairs. 4816 records in RAM.
INFO 2026-06-08 09:06:09 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 2s. Last read position: chr2:241,126,993
INFO 2026-06-08 09:06:09 MarkDuplicates Tracking 770171 as yet unmatched pairs. 1740 records in RAM.
INFO 2026-06-08 09:06:12 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 2s. Last read position: chr3:4,983,156
INFO 2026-06-08 09:06:12 MarkDuplicates Tracking 770122 as yet unmatched pairs. 41537 records in RAM.
INFO 2026-06-08 09:06:13 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr3:11,564,839
INFO 2026-06-08 09:06:13 MarkDuplicates Tracking 767141 as yet unmatched pairs. 38553 records in RAM.
INFO 2026-06-08 09:06:15 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr3:15,678,272
INFO 2026-06-08 09:06:15 MarkDuplicates Tracking 764815 as yet unmatched pairs. 36222 records in RAM.
INFO 2026-06-08 09:06:17 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr3:36,855,855
INFO 2026-06-08 09:06:17 MarkDuplicates Tracking 763301 as yet unmatched pairs. 34704 records in RAM.
INFO 2026-06-08 09:06:19 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr3:40,458,725
INFO 2026-06-08 09:06:19 MarkDuplicates Tracking 765873 as yet unmatched pairs. 37268 records in RAM.
INFO 2026-06-08 09:06:20 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr3:45,595,459
INFO 2026-06-08 09:06:20 MarkDuplicates Tracking 760623 as yet unmatched pairs. 32018 records in RAM.
INFO 2026-06-08 09:06:22 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr3:47,442,908
INFO 2026-06-08 09:06:22 MarkDuplicates Tracking 758720 as yet unmatched pairs. 30115 records in RAM.
INFO 2026-06-08 09:06:24 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr3:48,575,364
INFO 2026-06-08 09:06:24 MarkDuplicates Tracking 757447 as yet unmatched pairs. 28839 records in RAM.
INFO 2026-06-08 09:06:25 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr3:49,076,927
INFO 2026-06-08 09:06:25 MarkDuplicates Tracking 755151 as yet unmatched pairs. 26543 records in RAM.
INFO 2026-06-08 09:06:27 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr3:49,699,507
INFO 2026-06-08 09:06:27 MarkDuplicates Tracking 753812 as yet unmatched pairs. 25202 records in RAM.
INFO 2026-06-08 09:06:29 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 2s. Last read position: chr3:51,386,299
INFO 2026-06-08 09:06:29 MarkDuplicates Tracking 752191 as yet unmatched pairs. 23581 records in RAM.
INFO 2026-06-08 09:06:30 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr3:52,502,168
INFO 2026-06-08 09:06:30 MarkDuplicates Tracking 751798 as yet unmatched pairs. 23187 records in RAM.
INFO 2026-06-08 09:06:32 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr3:53,877,712
INFO 2026-06-08 09:06:32 MarkDuplicates Tracking 748605 as yet unmatched pairs. 19994 records in RAM.
INFO 2026-06-08 09:06:34 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr3:63,982,408
INFO 2026-06-08 09:06:34 MarkDuplicates Tracking 747420 as yet unmatched pairs. 18806 records in RAM.
INFO 2026-06-08 09:06:36 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:99,849,538
INFO 2026-06-08 09:06:36 MarkDuplicates Tracking 746331 as yet unmatched pairs. 17716 records in RAM.
INFO 2026-06-08 09:06:37 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr3:113,445,286
INFO 2026-06-08 09:06:37 MarkDuplicates Tracking 744683 as yet unmatched pairs. 16065 records in RAM.
INFO 2026-06-08 09:06:39 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:123,130,598
INFO 2026-06-08 09:06:39 MarkDuplicates Tracking 743433 as yet unmatched pairs. 14813 records in RAM.
INFO 2026-06-08 09:06:41 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 2s. Last read position: chr3:127,618,064
INFO 2026-06-08 09:06:41 MarkDuplicates Tracking 741770 as yet unmatched pairs. 13150 records in RAM.
INFO 2026-06-08 09:06:43 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:129,520,185
INFO 2026-06-08 09:06:43 MarkDuplicates Tracking 740487 as yet unmatched pairs. 11867 records in RAM.
INFO 2026-06-08 09:06:44 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr3:139,373,314
INFO 2026-06-08 09:06:44 MarkDuplicates Tracking 738674 as yet unmatched pairs. 10053 records in RAM.
INFO 2026-06-08 09:06:46 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 2s. Last read position: chr3:155,693,829
INFO 2026-06-08 09:06:46 MarkDuplicates Tracking 736872 as yet unmatched pairs. 8251 records in RAM.
INFO 2026-06-08 09:06:49 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 2s. Last read position: chr3:172,362,779
INFO 2026-06-08 09:06:49 MarkDuplicates Tracking 735901 as yet unmatched pairs. 7277 records in RAM.
INFO 2026-06-08 09:06:51 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 2s. Last read position: chr3:184,316,170
INFO 2026-06-08 09:06:51 MarkDuplicates Tracking 737591 as yet unmatched pairs. 8965 records in RAM.
INFO 2026-06-08 09:06:54 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 2s. Last read position: chr3:187,729,079
INFO 2026-06-08 09:06:54 MarkDuplicates Tracking 733180 as yet unmatched pairs. 4553 records in RAM.
INFO 2026-06-08 09:06:55 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:195,774,279
INFO 2026-06-08 09:06:55 MarkDuplicates Tracking 731475 as yet unmatched pairs. 2842 records in RAM.
INFO 2026-06-08 09:06:57 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:195,784,311
INFO 2026-06-08 09:06:57 MarkDuplicates Tracking 733570 as yet unmatched pairs. 4934 records in RAM.
INFO 2026-06-08 09:06:58 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:196,065,580
INFO 2026-06-08 09:06:58 MarkDuplicates Tracking 729997 as yet unmatched pairs. 1360 records in RAM.
INFO 2026-06-08 09:07:00 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr4:1,171,026
INFO 2026-06-08 09:07:00 MarkDuplicates Tracking 728206 as yet unmatched pairs. 20346 records in RAM.
INFO 2026-06-08 09:07:02 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr4:2,625,293
INFO 2026-06-08 09:07:02 MarkDuplicates Tracking 725966 as yet unmatched pairs. 18105 records in RAM.
INFO 2026-06-08 09:07:03 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr4:6,999,101
INFO 2026-06-08 09:07:03 MarkDuplicates Tracking 724112 as yet unmatched pairs. 16235 records in RAM.
INFO 2026-06-08 09:07:05 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr4:22,747,437
INFO 2026-06-08 09:07:05 MarkDuplicates Tracking 722125 as yet unmatched pairs. 14247 records in RAM.
INFO 2026-06-08 09:07:07 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr4:40,437,897
INFO 2026-06-08 09:07:07 MarkDuplicates Tracking 721014 as yet unmatched pairs. 13125 records in RAM.
INFO 2026-06-08 09:07:08 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr4:56,974,006
INFO 2026-06-08 09:07:08 MarkDuplicates Tracking 719161 as yet unmatched pairs. 11271 records in RAM.
INFO 2026-06-08 09:07:10 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr4:74,038,104
INFO 2026-06-08 09:07:10 MarkDuplicates Tracking 718747 as yet unmatched pairs. 10854 records in RAM.
INFO 2026-06-08 09:07:12 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr4:79,983,893
INFO 2026-06-08 09:07:12 MarkDuplicates Tracking 716704 as yet unmatched pairs. 8800 records in RAM.
INFO 2026-06-08 09:07:13 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr4:90,838,779
INFO 2026-06-08 09:07:13 MarkDuplicates Tracking 714842 as yet unmatched pairs. 6929 records in RAM.
INFO 2026-06-08 09:07:15 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr4:110,510,323
INFO 2026-06-08 09:07:15 MarkDuplicates Tracking 713485 as yet unmatched pairs. 5567 records in RAM.
INFO 2026-06-08 09:07:17 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr4:139,044,855
INFO 2026-06-08 09:07:17 MarkDuplicates Tracking 711913 as yet unmatched pairs. 3975 records in RAM.
INFO 2026-06-08 09:07:18 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr4:151,104,272
INFO 2026-06-08 09:07:18 MarkDuplicates Tracking 711739 as yet unmatched pairs. 3800 records in RAM.
INFO 2026-06-08 09:07:20 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr4:169,687,711
INFO 2026-06-08 09:07:20 MarkDuplicates Tracking 709415 as yet unmatched pairs. 1472 records in RAM.
INFO 2026-06-08 09:07:22 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 2s. Last read position: chr5:453,563
INFO 2026-06-08 09:07:22 MarkDuplicates Tracking 707911 as yet unmatched pairs. 34517 records in RAM.
INFO 2026-06-08 09:07:24 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr5:14,291,067
INFO 2026-06-08 09:07:24 MarkDuplicates Tracking 707420 as yet unmatched pairs. 34023 records in RAM.
INFO 2026-06-08 09:07:25 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr5:32,406,800
INFO 2026-06-08 09:07:25 MarkDuplicates Tracking 704327 as yet unmatched pairs. 30928 records in RAM.
INFO 2026-06-08 09:07:27 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr5:43,298,811
INFO 2026-06-08 09:07:27 MarkDuplicates Tracking 704708 as yet unmatched pairs. 31307 records in RAM.
INFO 2026-06-08 09:07:29 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr5:69,171,390
INFO 2026-06-08 09:07:29 MarkDuplicates Tracking 701627 as yet unmatched pairs. 28212 records in RAM.
INFO 2026-06-08 09:07:30 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr5:75,425,451
INFO 2026-06-08 09:07:30 MarkDuplicates Tracking 700449 as yet unmatched pairs. 27019 records in RAM.
INFO 2026-06-08 09:07:32 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr5:83,541,960
INFO 2026-06-08 09:07:32 MarkDuplicates Tracking 699389 as yet unmatched pairs. 25958 records in RAM.
INFO 2026-06-08 09:07:34 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr5:110,739,230
INFO 2026-06-08 09:07:34 MarkDuplicates Tracking 697507 as yet unmatched pairs. 24074 records in RAM.
INFO 2026-06-08 09:07:36 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 2s. Last read position: chr5:128,151,361
INFO 2026-06-08 09:07:36 MarkDuplicates Tracking 696817 as yet unmatched pairs. 23383 records in RAM.
INFO 2026-06-08 09:07:38 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr5:134,854,896
INFO 2026-06-08 09:07:38 MarkDuplicates Tracking 694481 as yet unmatched pairs. 21038 records in RAM.
INFO 2026-06-08 09:07:40 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 2s. Last read position: chr5:138,468,009
INFO 2026-06-08 09:07:40 MarkDuplicates Tracking 693033 as yet unmatched pairs. 19585 records in RAM.
INFO 2026-06-08 09:07:42 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 2s. Last read position: chr5:140,631,841
INFO 2026-06-08 09:07:42 MarkDuplicates Tracking 692037 as yet unmatched pairs. 18578 records in RAM.
INFO 2026-06-08 09:07:44 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr5:141,571,423
INFO 2026-06-08 09:07:44 MarkDuplicates Tracking 689994 as yet unmatched pairs. 16534 records in RAM.
INFO 2026-06-08 09:07:45 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr5:149,520,365
INFO 2026-06-08 09:07:45 MarkDuplicates Tracking 689786 as yet unmatched pairs. 16325 records in RAM.
INFO 2026-06-08 09:07:47 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,152
INFO 2026-06-08 09:07:47 MarkDuplicates Tracking 695743 as yet unmatched pairs. 22281 records in RAM.
INFO 2026-06-08 09:07:49 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr5:150,407,155
INFO 2026-06-08 09:07:49 MarkDuplicates Tracking 693297 as yet unmatched pairs. 19834 records in RAM.
INFO 2026-06-08 09:07:51 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr5:151,666,464
INFO 2026-06-08 09:07:51 MarkDuplicates Tracking 685998 as yet unmatched pairs. 12531 records in RAM.
INFO 2026-06-08 09:07:52 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr5:160,632,231
INFO 2026-06-08 09:07:52 MarkDuplicates Tracking 682245 as yet unmatched pairs. 8775 records in RAM.
INFO 2026-06-08 09:07:54 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr5:171,392,790
INFO 2026-06-08 09:07:54 MarkDuplicates Tracking 692999 as yet unmatched pairs. 19529 records in RAM.
INFO 2026-06-08 09:07:56 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr5:176,392,818
INFO 2026-06-08 09:07:56 MarkDuplicates Tracking 679561 as yet unmatched pairs. 6091 records in RAM.
INFO 2026-06-08 09:07:58 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 2s. Last read position: chr5:177,512,514
INFO 2026-06-08 09:07:58 MarkDuplicates Tracking 677693 as yet unmatched pairs. 4223 records in RAM.
INFO 2026-06-08 09:08:00 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr5:179,723,649
INFO 2026-06-08 09:08:00 MarkDuplicates Tracking 678393 as yet unmatched pairs. 4922 records in RAM.
INFO 2026-06-08 09:08:01 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr5:179,894,465
INFO 2026-06-08 09:08:01 MarkDuplicates Tracking 674738 as yet unmatched pairs. 1267 records in RAM.
INFO 2026-06-08 09:08:03 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 2s. Last read position: chr6:2,784,351
INFO 2026-06-08 09:08:03 MarkDuplicates Tracking 673278 as yet unmatched pairs. 42986 records in RAM.
INFO 2026-06-08 09:08:05 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr6:7,568,455
INFO 2026-06-08 09:08:05 MarkDuplicates Tracking 671347 as yet unmatched pairs. 41047 records in RAM.
INFO 2026-06-08 09:08:07 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr6:18,263,843
INFO 2026-06-08 09:08:07 MarkDuplicates Tracking 670109 as yet unmatched pairs. 39805 records in RAM.
INFO 2026-06-08 09:08:08 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr6:26,197,133
INFO 2026-06-08 09:08:08 MarkDuplicates Tracking 668062 as yet unmatched pairs. 37757 records in RAM.
INFO 2026-06-08 09:08:10 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr6:27,814,517
INFO 2026-06-08 09:08:10 MarkDuplicates Tracking 669491 as yet unmatched pairs. 39185 records in RAM.
INFO 2026-06-08 09:08:12 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr6:29,942,825
INFO 2026-06-08 09:08:12 MarkDuplicates Tracking 671092 as yet unmatched pairs. 40786 records in RAM.
INFO 2026-06-08 09:08:13 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr6:30,700,444
INFO 2026-06-08 09:08:13 MarkDuplicates Tracking 664025 as yet unmatched pairs. 33719 records in RAM.
INFO 2026-06-08 09:08:15 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr6:31,271,141
INFO 2026-06-08 09:08:15 MarkDuplicates Tracking 667431 as yet unmatched pairs. 37119 records in RAM.
INFO 2026-06-08 09:08:18 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 2s. Last read position: chr6:31,634,822
INFO 2026-06-08 09:08:18 MarkDuplicates Tracking 661768 as yet unmatched pairs. 31456 records in RAM.
INFO 2026-06-08 09:08:20 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 2s. Last read position: chr6:31,816,070
INFO 2026-06-08 09:08:20 MarkDuplicates Tracking 659927 as yet unmatched pairs. 29615 records in RAM.
INFO 2026-06-08 09:08:21 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr6:31,828,322
INFO 2026-06-08 09:08:21 MarkDuplicates Tracking 664170 as yet unmatched pairs. 33858 records in RAM.
INFO 2026-06-08 09:08:23 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr6:31,888,618
INFO 2026-06-08 09:08:23 MarkDuplicates Tracking 657865 as yet unmatched pairs. 27553 records in RAM.
INFO 2026-06-08 09:08:25 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr6:32,439,956
INFO 2026-06-08 09:08:25 MarkDuplicates Tracking 657598 as yet unmatched pairs. 27285 records in RAM.
INFO 2026-06-08 09:08:26 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr6:33,069,780
INFO 2026-06-08 09:08:26 MarkDuplicates Tracking 655801 as yet unmatched pairs. 25488 records in RAM.
INFO 2026-06-08 09:08:28 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr6:33,417,603
INFO 2026-06-08 09:08:28 MarkDuplicates Tracking 654033 as yet unmatched pairs. 23720 records in RAM.
INFO 2026-06-08 09:08:30 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr6:35,321,347
INFO 2026-06-08 09:08:30 MarkDuplicates Tracking 651832 as yet unmatched pairs. 21513 records in RAM.
INFO 2026-06-08 09:08:32 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr6:41,587,502
INFO 2026-06-08 09:08:32 MarkDuplicates Tracking 650433 as yet unmatched pairs. 20114 records in RAM.
INFO 2026-06-08 09:08:33 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr6:43,046,907
INFO 2026-06-08 09:08:33 MarkDuplicates Tracking 648961 as yet unmatched pairs. 18640 records in RAM.
INFO 2026-06-08 09:08:35 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr6:44,113,999
INFO 2026-06-08 09:08:35 MarkDuplicates Tracking 647355 as yet unmatched pairs. 17034 records in RAM.
INFO 2026-06-08 09:08:37 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr6:53,294,360
INFO 2026-06-08 09:08:37 MarkDuplicates Tracking 645639 as yet unmatched pairs. 15318 records in RAM.
INFO 2026-06-08 09:08:38 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr6:75,130,932
INFO 2026-06-08 09:08:38 MarkDuplicates Tracking 644473 as yet unmatched pairs. 14152 records in RAM.
INFO 2026-06-08 09:08:40 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr6:87,257,300
INFO 2026-06-08 09:08:40 MarkDuplicates Tracking 642890 as yet unmatched pairs. 12567 records in RAM.
INFO 2026-06-08 09:08:41 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr6:106,971,761
INFO 2026-06-08 09:08:41 MarkDuplicates Tracking 644023 as yet unmatched pairs. 13700 records in RAM.
INFO 2026-06-08 09:08:43 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr6:116,279,747
INFO 2026-06-08 09:08:43 MarkDuplicates Tracking 639767 as yet unmatched pairs. 9441 records in RAM.
INFO 2026-06-08 09:08:45 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr6:131,951,187
INFO 2026-06-08 09:08:45 MarkDuplicates Tracking 639042 as yet unmatched pairs. 8708 records in RAM.
INFO 2026-06-08 09:08:47 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr6:138,432,161
INFO 2026-06-08 09:08:47 MarkDuplicates Tracking 637109 as yet unmatched pairs. 6775 records in RAM.
INFO 2026-06-08 09:08:49 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr6:151,349,550
INFO 2026-06-08 09:08:49 MarkDuplicates Tracking 635364 as yet unmatched pairs. 5028 records in RAM.
INFO 2026-06-08 09:08:51 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 2s. Last read position: chr6:158,784,644
INFO 2026-06-08 09:08:51 MarkDuplicates Tracking 635461 as yet unmatched pairs. 5113 records in RAM.
INFO 2026-06-08 09:08:53 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 2s. Last read position: chr6:166,320,149
INFO 2026-06-08 09:08:53 MarkDuplicates Tracking 632672 as yet unmatched pairs. 2314 records in RAM.
INFO 2026-06-08 09:08:55 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 2s. Last read position: chr7:729,761
INFO 2026-06-08 09:08:55 MarkDuplicates Tracking 630442 as yet unmatched pairs. 43079 records in RAM.
INFO 2026-06-08 09:08:57 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr7:2,538,530
INFO 2026-06-08 09:08:57 MarkDuplicates Tracking 628958 as yet unmatched pairs. 41587 records in RAM.
INFO 2026-06-08 09:08:58 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr7:5,374,451
INFO 2026-06-08 09:08:58 MarkDuplicates Tracking 627272 as yet unmatched pairs. 39899 records in RAM.
INFO 2026-06-08 09:09:00 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,537
INFO 2026-06-08 09:09:00 MarkDuplicates Tracking 632559 as yet unmatched pairs. 45184 records in RAM.
INFO 2026-06-08 09:09:02 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr7:6,600,109
INFO 2026-06-08 09:09:02 MarkDuplicates Tracking 622684 as yet unmatched pairs. 35309 records in RAM.
INFO 2026-06-08 09:09:04 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr7:17,299,272
INFO 2026-06-08 09:09:04 MarkDuplicates Tracking 621866 as yet unmatched pairs. 34491 records in RAM.
INFO 2026-06-08 09:09:05 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr7:30,599,994
INFO 2026-06-08 09:09:05 MarkDuplicates Tracking 620040 as yet unmatched pairs. 32659 records in RAM.
INFO 2026-06-08 09:09:07 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr7:44,082,326
INFO 2026-06-08 09:09:07 MarkDuplicates Tracking 618020 as yet unmatched pairs. 30636 records in RAM.
INFO 2026-06-08 09:09:09 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 2s. Last read position: chr7:45,080,651
INFO 2026-06-08 09:09:09 MarkDuplicates Tracking 616334 as yet unmatched pairs. 28949 records in RAM.
INFO 2026-06-08 09:09:11 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr7:65,979,889
INFO 2026-06-08 09:09:11 MarkDuplicates Tracking 615089 as yet unmatched pairs. 27700 records in RAM.
INFO 2026-06-08 09:09:13 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr7:73,736,566
INFO 2026-06-08 09:09:13 MarkDuplicates Tracking 614349 as yet unmatched pairs. 26960 records in RAM.
INFO 2026-06-08 09:09:14 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr7:75,201,292
INFO 2026-06-08 09:09:14 MarkDuplicates Tracking 612681 as yet unmatched pairs. 25290 records in RAM.
INFO 2026-06-08 09:09:16 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr7:76,482,775
INFO 2026-06-08 09:09:16 MarkDuplicates Tracking 610979 as yet unmatched pairs. 23588 records in RAM.
INFO 2026-06-08 09:09:18 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr7:92,387,822
INFO 2026-06-08 09:09:18 MarkDuplicates Tracking 609622 as yet unmatched pairs. 22230 records in RAM.
INFO 2026-06-08 09:09:19 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr7:94,410,902
INFO 2026-06-08 09:09:19 MarkDuplicates Tracking 614317 as yet unmatched pairs. 26923 records in RAM.
INFO 2026-06-08 09:09:21 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr7:94,426,503
INFO 2026-06-08 09:09:21 MarkDuplicates Tracking 609678 as yet unmatched pairs. 22283 records in RAM.
INFO 2026-06-08 09:09:24 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 2s. Last read position: chr7:99,388,111
INFO 2026-06-08 09:09:24 MarkDuplicates Tracking 605469 as yet unmatched pairs. 18073 records in RAM.
INFO 2026-06-08 09:09:26 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 2s. Last read position: chr7:100,574,991
INFO 2026-06-08 09:09:26 MarkDuplicates Tracking 603266 as yet unmatched pairs. 15866 records in RAM.
INFO 2026-06-08 09:09:28 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr7:100,958,807
INFO 2026-06-08 09:09:28 MarkDuplicates Tracking 601744 as yet unmatched pairs. 14339 records in RAM.
INFO 2026-06-08 09:09:29 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,282
INFO 2026-06-08 09:09:29 MarkDuplicates Tracking 602064 as yet unmatched pairs. 14659 records in RAM.
INFO 2026-06-08 09:09:31 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr7:102,438,983
INFO 2026-06-08 09:09:31 MarkDuplicates Tracking 599964 as yet unmatched pairs. 12554 records in RAM.
INFO 2026-06-08 09:09:32 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr7:107,548,109
INFO 2026-06-08 09:09:32 MarkDuplicates Tracking 598793 as yet unmatched pairs. 11381 records in RAM.
INFO 2026-06-08 09:09:34 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr7:127,591,279
INFO 2026-06-08 09:09:34 MarkDuplicates Tracking 597627 as yet unmatched pairs. 10211 records in RAM.
INFO 2026-06-08 09:09:36 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr7:128,841,550
INFO 2026-06-08 09:09:36 MarkDuplicates Tracking 596132 as yet unmatched pairs. 8713 records in RAM.
INFO 2026-06-08 09:09:37 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr7:137,885,076
INFO 2026-06-08 09:09:37 MarkDuplicates Tracking 595649 as yet unmatched pairs. 8223 records in RAM.
INFO 2026-06-08 09:09:39 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr7:142,116,939
INFO 2026-06-08 09:09:39 MarkDuplicates Tracking 593312 as yet unmatched pairs. 5885 records in RAM.
INFO 2026-06-08 09:09:40 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr7:149,005,218
INFO 2026-06-08 09:09:40 MarkDuplicates Tracking 593031 as yet unmatched pairs. 5604 records in RAM.
INFO 2026-06-08 09:09:42 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:151,061,955
INFO 2026-06-08 09:09:42 MarkDuplicates Tracking 591164 as yet unmatched pairs. 3737 records in RAM.
INFO 2026-06-08 09:09:44 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 2s. Last read position: chr7:155,792,576
INFO 2026-06-08 09:09:44 MarkDuplicates Tracking 588356 as yet unmatched pairs. 929 records in RAM.
INFO 2026-06-08 09:09:46 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr8:11,802,821
INFO 2026-06-08 09:09:46 MarkDuplicates Tracking 588063 as yet unmatched pairs. 33657 records in RAM.
INFO 2026-06-08 09:09:48 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr8:22,067,550
INFO 2026-06-08 09:09:48 MarkDuplicates Tracking 585125 as yet unmatched pairs. 30719 records in RAM.
INFO 2026-06-08 09:09:49 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr8:23,258,071
INFO 2026-06-08 09:09:49 MarkDuplicates Tracking 583508 as yet unmatched pairs. 29101 records in RAM.
INFO 2026-06-08 09:09:53 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 3s. Last read position: chr8:30,647,348
INFO 2026-06-08 09:09:53 MarkDuplicates Tracking 581893 as yet unmatched pairs. 27483 records in RAM.
INFO 2026-06-08 09:09:55 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 2s. Last read position: chr8:38,424,315
INFO 2026-06-08 09:09:55 MarkDuplicates Tracking 580211 as yet unmatched pairs. 25788 records in RAM.
INFO 2026-06-08 09:09:57 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr8:47,735,447
INFO 2026-06-08 09:09:57 MarkDuplicates Tracking 578952 as yet unmatched pairs. 24529 records in RAM.
INFO 2026-06-08 09:09:58 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr8:60,742,761
INFO 2026-06-08 09:09:58 MarkDuplicates Tracking 577665 as yet unmatched pairs. 23241 records in RAM.
INFO 2026-06-08 09:10:00 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr8:73,292,294
INFO 2026-06-08 09:10:00 MarkDuplicates Tracking 578705 as yet unmatched pairs. 24276 records in RAM.
INFO 2026-06-08 09:10:02 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr8:96,231,922
INFO 2026-06-08 09:10:02 MarkDuplicates Tracking 574789 as yet unmatched pairs. 20359 records in RAM.
INFO 2026-06-08 09:10:04 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr8:100,718,238
INFO 2026-06-08 09:10:04 MarkDuplicates Tracking 579053 as yet unmatched pairs. 24623 records in RAM.
INFO 2026-06-08 09:10:05 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr8:119,240,171
INFO 2026-06-08 09:10:05 MarkDuplicates Tracking 572895 as yet unmatched pairs. 18465 records in RAM.
INFO 2026-06-08 09:10:07 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr8:133,220,693
INFO 2026-06-08 09:10:07 MarkDuplicates Tracking 570311 as yet unmatched pairs. 15881 records in RAM.
INFO 2026-06-08 09:10:09 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr8:143,580,510
INFO 2026-06-08 09:10:09 MarkDuplicates Tracking 568892 as yet unmatched pairs. 14459 records in RAM.
INFO 2026-06-08 09:10:10 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,289
INFO 2026-06-08 09:10:10 MarkDuplicates Tracking 566598 as yet unmatched pairs. 12157 records in RAM.
INFO 2026-06-08 09:10:11 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,927
INFO 2026-06-08 09:10:11 MarkDuplicates Tracking 568020 as yet unmatched pairs. 13579 records in RAM.
INFO 2026-06-08 09:10:13 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,554
INFO 2026-06-08 09:10:13 MarkDuplicates Tracking 565274 as yet unmatched pairs. 10832 records in RAM.
INFO 2026-06-08 09:10:14 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,092
INFO 2026-06-08 09:10:14 MarkDuplicates Tracking 567947 as yet unmatched pairs. 13505 records in RAM.
INFO 2026-06-08 09:10:15 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,833
INFO 2026-06-08 09:10:15 MarkDuplicates Tracking 567364 as yet unmatched pairs. 12922 records in RAM.
INFO 2026-06-08 09:10:16 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,461
INFO 2026-06-08 09:10:16 MarkDuplicates Tracking 564953 as yet unmatched pairs. 10511 records in RAM.
INFO 2026-06-08 09:10:19 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 2s. Last read position: chr8:143,919,319
INFO 2026-06-08 09:10:19 MarkDuplicates Tracking 566725 as yet unmatched pairs. 12283 records in RAM.
INFO 2026-06-08 09:10:21 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr8:143,930,022
INFO 2026-06-08 09:10:21 MarkDuplicates Tracking 562328 as yet unmatched pairs. 7886 records in RAM.
INFO 2026-06-08 09:10:23 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr8:144,262,904
INFO 2026-06-08 09:10:23 MarkDuplicates Tracking 557324 as yet unmatched pairs. 2882 records in RAM.
INFO 2026-06-08 09:10:25 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 2s. Last read position: chr8:144,545,798
INFO 2026-06-08 09:10:25 MarkDuplicates Tracking 555120 as yet unmatched pairs. 678 records in RAM.
INFO 2026-06-08 09:10:27 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 2s. Last read position: chr9:14,088,254
INFO 2026-06-08 09:10:27 MarkDuplicates Tracking 554000 as yet unmatched pairs. 34855 records in RAM.
INFO 2026-06-08 09:10:29 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr9:33,166,911
INFO 2026-06-08 09:10:29 MarkDuplicates Tracking 553468 as yet unmatched pairs. 34323 records in RAM.
INFO 2026-06-08 09:10:31 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr9:35,108,129
INFO 2026-06-08 09:10:31 MarkDuplicates Tracking 550381 as yet unmatched pairs. 31235 records in RAM.
INFO 2026-06-08 09:10:33 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr9:36,191,158
INFO 2026-06-08 09:10:33 MarkDuplicates Tracking 549605 as yet unmatched pairs. 30459 records in RAM.
INFO 2026-06-08 09:10:34 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr9:71,745,469
INFO 2026-06-08 09:10:34 MarkDuplicates Tracking 547604 as yet unmatched pairs. 28456 records in RAM.
INFO 2026-06-08 09:10:36 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr9:86,035,397
INFO 2026-06-08 09:10:36 MarkDuplicates Tracking 546999 as yet unmatched pairs. 27851 records in RAM.
INFO 2026-06-08 09:10:37 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr9:93,450,568
INFO 2026-06-08 09:10:37 MarkDuplicates Tracking 544632 as yet unmatched pairs. 25484 records in RAM.
INFO 2026-06-08 09:10:39 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr9:98,985,611
INFO 2026-06-08 09:10:39 MarkDuplicates Tracking 544147 as yet unmatched pairs. 24986 records in RAM.
INFO 2026-06-08 09:10:41 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr9:107,302,059
INFO 2026-06-08 09:10:41 MarkDuplicates Tracking 542236 as yet unmatched pairs. 23073 records in RAM.
INFO 2026-06-08 09:10:43 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr9:113,583,793
INFO 2026-06-08 09:10:43 MarkDuplicates Tracking 540255 as yet unmatched pairs. 21092 records in RAM.
INFO 2026-06-08 09:10:45 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr9:116,211,649
INFO 2026-06-08 09:10:45 MarkDuplicates Tracking 538447 as yet unmatched pairs. 19284 records in RAM.
INFO 2026-06-08 09:10:46 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr9:125,200,841
INFO 2026-06-08 09:10:46 MarkDuplicates Tracking 537037 as yet unmatched pairs. 17868 records in RAM.
INFO 2026-06-08 09:10:48 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chr9:127,815,941
INFO 2026-06-08 09:10:48 MarkDuplicates Tracking 535829 as yet unmatched pairs. 16654 records in RAM.
INFO 2026-06-08 09:11:50 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 61s. Last read position: chr9:128,471,382
INFO 2026-06-08 09:11:50 MarkDuplicates Tracking 533484 as yet unmatched pairs. 14308 records in RAM.
INFO 2026-06-08 09:11:53 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 2s. Last read position: chr9:129,107,796
INFO 2026-06-08 09:11:53 MarkDuplicates Tracking 531845 as yet unmatched pairs. 12669 records in RAM.
INFO 2026-06-08 09:11:54 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr9:131,436,627
INFO 2026-06-08 09:11:54 MarkDuplicates Tracking 530426 as yet unmatched pairs. 11249 records in RAM.
INFO 2026-06-08 09:11:56 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr9:133,350,596
INFO 2026-06-08 09:11:56 MarkDuplicates Tracking 530687 as yet unmatched pairs. 11508 records in RAM.
INFO 2026-06-08 09:11:58 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr9:134,806,286
INFO 2026-06-08 09:11:58 MarkDuplicates Tracking 527046 as yet unmatched pairs. 7867 records in RAM.
INFO 2026-06-08 09:11:59 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr9:136,467,079
INFO 2026-06-08 09:11:59 MarkDuplicates Tracking 525593 as yet unmatched pairs. 6414 records in RAM.
INFO 2026-06-08 09:12:01 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr9:136,838,968
INFO 2026-06-08 09:12:01 MarkDuplicates Tracking 524276 as yet unmatched pairs. 5097 records in RAM.
INFO 2026-06-08 09:12:03 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr9:137,187,903
INFO 2026-06-08 09:12:03 MarkDuplicates Tracking 521578 as yet unmatched pairs. 2399 records in RAM.
INFO 2026-06-08 09:12:05 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr9:137,814,496
INFO 2026-06-08 09:12:05 MarkDuplicates Tracking 519395 as yet unmatched pairs. 216 records in RAM.
INFO 2026-06-08 09:12:06 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr10:7,799,774
INFO 2026-06-08 09:12:06 MarkDuplicates Tracking 518590 as yet unmatched pairs. 27690 records in RAM.
INFO 2026-06-08 09:12:08 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr10:24,545,038
INFO 2026-06-08 09:12:08 MarkDuplicates Tracking 516597 as yet unmatched pairs. 25686 records in RAM.
INFO 2026-06-08 09:12:10 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr10:32,055,886
INFO 2026-06-08 09:12:10 MarkDuplicates Tracking 517224 as yet unmatched pairs. 26311 records in RAM.
INFO 2026-06-08 09:12:11 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr10:45,844,345
INFO 2026-06-08 09:12:11 MarkDuplicates Tracking 514126 as yet unmatched pairs. 23213 records in RAM.
INFO 2026-06-08 09:12:13 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr10:60,186,752
INFO 2026-06-08 09:12:13 MarkDuplicates Tracking 512659 as yet unmatched pairs. 21746 records in RAM.
INFO 2026-06-08 09:12:15 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr10:70,883,761
INFO 2026-06-08 09:12:15 MarkDuplicates Tracking 511358 as yet unmatched pairs. 20442 records in RAM.
INFO 2026-06-08 09:12:17 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr10:74,070,708
INFO 2026-06-08 09:12:17 MarkDuplicates Tracking 510028 as yet unmatched pairs. 19112 records in RAM.
INFO 2026-06-08 09:12:18 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr10:79,512,809
INFO 2026-06-08 09:12:18 MarkDuplicates Tracking 508196 as yet unmatched pairs. 17273 records in RAM.
INFO 2026-06-08 09:12:20 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr10:87,234,297
INFO 2026-06-08 09:12:20 MarkDuplicates Tracking 506944 as yet unmatched pairs. 16021 records in RAM.
INFO 2026-06-08 09:12:22 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr10:93,397,246
INFO 2026-06-08 09:12:22 MarkDuplicates Tracking 505796 as yet unmatched pairs. 14873 records in RAM.
INFO 2026-06-08 09:12:24 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr10:96,949,053
INFO 2026-06-08 09:12:24 MarkDuplicates Tracking 504160 as yet unmatched pairs. 13237 records in RAM.
INFO 2026-06-08 09:12:25 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr10:100,347,478
INFO 2026-06-08 09:12:25 MarkDuplicates Tracking 503304 as yet unmatched pairs. 12381 records in RAM.
INFO 2026-06-08 09:12:27 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr10:102,141,596
INFO 2026-06-08 09:12:27 MarkDuplicates Tracking 501448 as yet unmatched pairs. 10525 records in RAM.
INFO 2026-06-08 09:12:29 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr10:103,571,016
INFO 2026-06-08 09:12:29 MarkDuplicates Tracking 499924 as yet unmatched pairs. 9001 records in RAM.
INFO 2026-06-08 09:12:30 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr10:117,284,042
INFO 2026-06-08 09:12:30 MarkDuplicates Tracking 497875 as yet unmatched pairs. 6942 records in RAM.
INFO 2026-06-08 09:12:32 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr10:122,576,401
INFO 2026-06-08 09:12:32 MarkDuplicates Tracking 498074 as yet unmatched pairs. 7140 records in RAM.
INFO 2026-06-08 09:12:33 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr10:122,592,542
INFO 2026-06-08 09:12:33 MarkDuplicates Tracking 500776 as yet unmatched pairs. 9827 records in RAM.
INFO 2026-06-08 09:12:35 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr10:122,607,156
INFO 2026-06-08 09:12:35 MarkDuplicates Tracking 495640 as yet unmatched pairs. 4691 records in RAM.
INFO 2026-06-08 09:12:36 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr10:122,643,162
INFO 2026-06-08 09:12:36 MarkDuplicates Tracking 497139 as yet unmatched pairs. 6190 records in RAM.
INFO 2026-06-08 09:12:38 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr10:128,111,974
INFO 2026-06-08 09:12:38 MarkDuplicates Tracking 492546 as yet unmatched pairs. 1596 records in RAM.
INFO 2026-06-08 09:12:40 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr11:319,814
INFO 2026-06-08 09:12:40 MarkDuplicates Tracking 497744 as yet unmatched pairs. 74383 records in RAM.
INFO 2026-06-08 09:12:41 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr11:619,081
INFO 2026-06-08 09:12:41 MarkDuplicates Tracking 488847 as yet unmatched pairs. 65486 records in RAM.
INFO 2026-06-08 09:12:43 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr11:1,013,958
INFO 2026-06-08 09:12:43 MarkDuplicates Tracking 492636 as yet unmatched pairs. 69275 records in RAM.
INFO 2026-06-08 09:12:44 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr11:1,017,623
INFO 2026-06-08 09:12:44 MarkDuplicates Tracking 486612 as yet unmatched pairs. 63251 records in RAM.
INFO 2026-06-08 09:12:47 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 2s. Last read position: chr11:1,025,346
INFO 2026-06-08 09:12:47 MarkDuplicates Tracking 487099 as yet unmatched pairs. 63738 records in RAM.
INFO 2026-06-08 09:12:49 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr11:1,075,670
INFO 2026-06-08 09:12:49 MarkDuplicates Tracking 485654 as yet unmatched pairs. 62293 records in RAM.
INFO 2026-06-08 09:12:50 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr11:1,078,380
INFO 2026-06-08 09:12:50 MarkDuplicates Tracking 520028 as yet unmatched pairs. 96666 records in RAM.
INFO 2026-06-08 09:12:52 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr11:1,083,408
INFO 2026-06-08 09:12:52 MarkDuplicates Tracking 489157 as yet unmatched pairs. 65786 records in RAM.
INFO 2026-06-08 09:12:54 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr11:1,085,684
INFO 2026-06-08 09:12:54 MarkDuplicates Tracking 494424 as yet unmatched pairs. 71053 records in RAM.
INFO 2026-06-08 09:12:56 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr11:1,089,657
INFO 2026-06-08 09:12:56 MarkDuplicates Tracking 486862 as yet unmatched pairs. 63491 records in RAM.
INFO 2026-06-08 09:12:58 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 2s. Last read position: chr11:1,200,629
INFO 2026-06-08 09:12:58 MarkDuplicates Tracking 474833 as yet unmatched pairs. 51462 records in RAM.
INFO 2026-06-08 09:13:01 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 2s. Last read position: chr11:1,242,851
INFO 2026-06-08 09:13:01 MarkDuplicates Tracking 473455 as yet unmatched pairs. 50084 records in RAM.
INFO 2026-06-08 09:13:02 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr11:1,246,362
INFO 2026-06-08 09:13:02 MarkDuplicates Tracking 473359 as yet unmatched pairs. 49988 records in RAM.
INFO 2026-06-08 09:13:03 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr11:1,249,620
INFO 2026-06-08 09:13:03 MarkDuplicates Tracking 472596 as yet unmatched pairs. 49224 records in RAM.
INFO 2026-06-08 09:13:05 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr11:1,753,846
INFO 2026-06-08 09:13:05 MarkDuplicates Tracking 473339 as yet unmatched pairs. 49967 records in RAM.
INFO 2026-06-08 09:13:07 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr11:3,705,324
INFO 2026-06-08 09:13:07 MarkDuplicates Tracking 468543 as yet unmatched pairs. 45171 records in RAM.
INFO 2026-06-08 09:13:08 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr11:7,987,394
INFO 2026-06-08 09:13:08 MarkDuplicates Tracking 469232 as yet unmatched pairs. 45860 records in RAM.
INFO 2026-06-08 09:13:10 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr11:10,806,015
INFO 2026-06-08 09:13:10 MarkDuplicates Tracking 466111 as yet unmatched pairs. 42733 records in RAM.
INFO 2026-06-08 09:13:11 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr11:18,402,859
INFO 2026-06-08 09:13:11 MarkDuplicates Tracking 467071 as yet unmatched pairs. 43690 records in RAM.
INFO 2026-06-08 09:13:13 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr11:34,984,714
INFO 2026-06-08 09:13:13 MarkDuplicates Tracking 462279 as yet unmatched pairs. 38898 records in RAM.
INFO 2026-06-08 09:13:15 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr11:46,307,966
INFO 2026-06-08 09:13:15 MarkDuplicates Tracking 464605 as yet unmatched pairs. 41210 records in RAM.
INFO 2026-06-08 09:13:16 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr11:47,261,546
INFO 2026-06-08 09:13:16 MarkDuplicates Tracking 458980 as yet unmatched pairs. 35575 records in RAM.
INFO 2026-06-08 09:13:18 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr11:57,696,815
INFO 2026-06-08 09:13:18 MarkDuplicates Tracking 457556 as yet unmatched pairs. 34150 records in RAM.
INFO 2026-06-08 09:13:19 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr11:61,208,460
INFO 2026-06-08 09:13:19 MarkDuplicates Tracking 455854 as yet unmatched pairs. 32446 records in RAM.
INFO 2026-06-08 09:13:21 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr11:61,965,085
INFO 2026-06-08 09:13:21 MarkDuplicates Tracking 458319 as yet unmatched pairs. 34910 records in RAM.
INFO 2026-06-08 09:13:22 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr11:62,559,607
INFO 2026-06-08 09:13:22 MarkDuplicates Tracking 453333 as yet unmatched pairs. 29924 records in RAM.
INFO 2026-06-08 09:13:24 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr11:62,800,415
INFO 2026-06-08 09:13:24 MarkDuplicates Tracking 451926 as yet unmatched pairs. 28517 records in RAM.
INFO 2026-06-08 09:13:26 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr11:64,254,426
INFO 2026-06-08 09:13:26 MarkDuplicates Tracking 450303 as yet unmatched pairs. 26893 records in RAM.
INFO 2026-06-08 09:13:27 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr11:64,895,149
INFO 2026-06-08 09:13:27 MarkDuplicates Tracking 448482 as yet unmatched pairs. 25072 records in RAM.
INFO 2026-06-08 09:13:29 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr11:65,530,735
INFO 2026-06-08 09:13:29 MarkDuplicates Tracking 446876 as yet unmatched pairs. 23466 records in RAM.
INFO 2026-06-08 09:13:32 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 2s. Last read position: chr11:65,777,850
INFO 2026-06-08 09:13:32 MarkDuplicates Tracking 444846 as yet unmatched pairs. 21425 records in RAM.
INFO 2026-06-08 09:13:33 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr11:66,491,530
INFO 2026-06-08 09:13:33 MarkDuplicates Tracking 442899 as yet unmatched pairs. 19478 records in RAM.
INFO 2026-06-08 09:13:35 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr11:67,435,998
INFO 2026-06-08 09:13:35 MarkDuplicates Tracking 441024 as yet unmatched pairs. 17603 records in RAM.
INFO 2026-06-08 09:13:37 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr11:68,363,747
INFO 2026-06-08 09:13:37 MarkDuplicates Tracking 439705 as yet unmatched pairs. 16282 records in RAM.
INFO 2026-06-08 09:13:39 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr11:71,435,637
INFO 2026-06-08 09:13:39 MarkDuplicates Tracking 437959 as yet unmatched pairs. 14535 records in RAM.
INFO 2026-06-08 09:13:40 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr11:72,989,071
INFO 2026-06-08 09:13:40 MarkDuplicates Tracking 436230 as yet unmatched pairs. 12806 records in RAM.
INFO 2026-06-08 09:13:42 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr11:75,571,942
INFO 2026-06-08 09:13:42 MarkDuplicates Tracking 434910 as yet unmatched pairs. 11485 records in RAM.
INFO 2026-06-08 09:13:43 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr11:86,807,965
INFO 2026-06-08 09:13:43 MarkDuplicates Tracking 432940 as yet unmatched pairs. 9515 records in RAM.
INFO 2026-06-08 09:13:45 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr11:108,052,689
INFO 2026-06-08 09:13:45 MarkDuplicates Tracking 431297 as yet unmatched pairs. 7865 records in RAM.
INFO 2026-06-08 09:13:47 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:117,338,565
INFO 2026-06-08 09:13:47 MarkDuplicates Tracking 429687 as yet unmatched pairs. 6255 records in RAM.
INFO 2026-06-08 09:13:48 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr11:119,046,629
INFO 2026-06-08 09:13:48 MarkDuplicates Tracking 428580 as yet unmatched pairs. 5146 records in RAM.
INFO 2026-06-08 09:13:50 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:123,057,818
INFO 2026-06-08 09:13:50 MarkDuplicates Tracking 428391 as yet unmatched pairs. 4957 records in RAM.
INFO 2026-06-08 09:13:51 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr11:126,540,239
INFO 2026-06-08 09:13:51 MarkDuplicates Tracking 424974 as yet unmatched pairs. 1539 records in RAM.
INFO 2026-06-08 09:13:53 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr12:19,016
INFO 2026-06-08 09:13:53 MarkDuplicates Tracking 423507 as yet unmatched pairs. 47488 records in RAM.
INFO 2026-06-08 09:13:55 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr12:6,016,176
INFO 2026-06-08 09:13:55 MarkDuplicates Tracking 422011 as yet unmatched pairs. 45982 records in RAM.
INFO 2026-06-08 09:13:57 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr12:6,583,027
INFO 2026-06-08 09:13:57 MarkDuplicates Tracking 420880 as yet unmatched pairs. 44837 records in RAM.
INFO 2026-06-08 09:13:58 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr12:7,062,477
INFO 2026-06-08 09:13:58 MarkDuplicates Tracking 419179 as yet unmatched pairs. 43136 records in RAM.
INFO 2026-06-08 09:13:59 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr12:10,715,739
INFO 2026-06-08 09:13:59 MarkDuplicates Tracking 418080 as yet unmatched pairs. 42030 records in RAM.
INFO 2026-06-08 09:14:01 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr12:21,635,422
INFO 2026-06-08 09:14:01 MarkDuplicates Tracking 416861 as yet unmatched pairs. 40811 records in RAM.
INFO 2026-06-08 09:14:04 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 2s. Last read position: chr12:32,850,866
INFO 2026-06-08 09:14:04 MarkDuplicates Tracking 414842 as yet unmatched pairs. 38792 records in RAM.
INFO 2026-06-08 09:14:05 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr12:48,818,832
INFO 2026-06-08 09:14:05 MarkDuplicates Tracking 413098 as yet unmatched pairs. 37032 records in RAM.
INFO 2026-06-08 09:14:07 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,726
INFO 2026-06-08 09:14:07 MarkDuplicates Tracking 412688 as yet unmatched pairs. 36622 records in RAM.
INFO 2026-06-08 09:14:08 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr12:50,678,679
INFO 2026-06-08 09:14:08 MarkDuplicates Tracking 410262 as yet unmatched pairs. 34196 records in RAM.
INFO 2026-06-08 09:14:10 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr12:52,058,764
INFO 2026-06-08 09:14:10 MarkDuplicates Tracking 414544 as yet unmatched pairs. 38477 records in RAM.
INFO 2026-06-08 09:14:11 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr12:52,951,531
INFO 2026-06-08 09:14:11 MarkDuplicates Tracking 408587 as yet unmatched pairs. 32518 records in RAM.
INFO 2026-06-08 09:14:13 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr12:53,461,013
INFO 2026-06-08 09:14:13 MarkDuplicates Tracking 407400 as yet unmatched pairs. 31331 records in RAM.
INFO 2026-06-08 09:14:14 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr12:54,404,851
INFO 2026-06-08 09:14:14 MarkDuplicates Tracking 404997 as yet unmatched pairs. 28927 records in RAM.
INFO 2026-06-08 09:14:16 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr12:56,160,097
INFO 2026-06-08 09:14:16 MarkDuplicates Tracking 405186 as yet unmatched pairs. 29114 records in RAM.
INFO 2026-06-08 09:14:18 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr12:56,670,240
INFO 2026-06-08 09:14:18 MarkDuplicates Tracking 402915 as yet unmatched pairs. 26842 records in RAM.
INFO 2026-06-08 09:14:19 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr12:57,166,138
INFO 2026-06-08 09:14:19 MarkDuplicates Tracking 401340 as yet unmatched pairs. 25267 records in RAM.
INFO 2026-06-08 09:14:21 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr12:57,520,360
INFO 2026-06-08 09:14:21 MarkDuplicates Tracking 398757 as yet unmatched pairs. 22684 records in RAM.
INFO 2026-06-08 09:14:23 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 2s. Last read position: chr12:67,305,670
INFO 2026-06-08 09:14:23 MarkDuplicates Tracking 397571 as yet unmatched pairs. 21494 records in RAM.
INFO 2026-06-08 09:14:25 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr12:76,059,818
INFO 2026-06-08 09:14:25 MarkDuplicates Tracking 397385 as yet unmatched pairs. 21306 records in RAM.
INFO 2026-06-08 09:14:27 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr12:95,217,876
INFO 2026-06-08 09:14:27 MarkDuplicates Tracking 394940 as yet unmatched pairs. 18859 records in RAM.
INFO 2026-06-08 09:14:28 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr12:103,934,097
INFO 2026-06-08 09:14:28 MarkDuplicates Tracking 395271 as yet unmatched pairs. 19189 records in RAM.
INFO 2026-06-08 09:14:30 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr12:107,319,888
INFO 2026-06-08 09:14:30 MarkDuplicates Tracking 391762 as yet unmatched pairs. 15680 records in RAM.
INFO 2026-06-08 09:14:31 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr12:110,435,118
INFO 2026-06-08 09:14:31 MarkDuplicates Tracking 390972 as yet unmatched pairs. 14873 records in RAM.
INFO 2026-06-08 09:14:33 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr12:112,405,318
INFO 2026-06-08 09:14:33 MarkDuplicates Tracking 389483 as yet unmatched pairs. 13384 records in RAM.
INFO 2026-06-08 09:14:34 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr12:116,111,428
INFO 2026-06-08 09:14:34 MarkDuplicates Tracking 386850 as yet unmatched pairs. 10751 records in RAM.
INFO 2026-06-08 09:14:36 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr12:120,197,359
INFO 2026-06-08 09:14:36 MarkDuplicates Tracking 389342 as yet unmatched pairs. 13238 records in RAM.
INFO 2026-06-08 09:14:38 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr12:121,260,319
INFO 2026-06-08 09:14:38 MarkDuplicates Tracking 383961 as yet unmatched pairs. 7855 records in RAM.
INFO 2026-06-08 09:14:39 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr12:122,767,487
INFO 2026-06-08 09:14:39 MarkDuplicates Tracking 382191 as yet unmatched pairs. 6085 records in RAM.
INFO 2026-06-08 09:14:41 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr12:124,340,614
INFO 2026-06-08 09:14:41 MarkDuplicates Tracking 380825 as yet unmatched pairs. 4719 records in RAM.
INFO 2026-06-08 09:14:42 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr12:131,778,257
INFO 2026-06-08 09:14:42 MarkDuplicates Tracking 379174 as yet unmatched pairs. 3062 records in RAM.
INFO 2026-06-08 09:14:44 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr12:132,747,957
INFO 2026-06-08 09:14:44 MarkDuplicates Tracking 377222 as yet unmatched pairs. 1110 records in RAM.
INFO 2026-06-08 09:14:46 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr13:24,223,568
INFO 2026-06-08 09:14:46 MarkDuplicates Tracking 375659 as yet unmatched pairs. 11398 records in RAM.
INFO 2026-06-08 09:14:47 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr13:32,658,275
INFO 2026-06-08 09:14:47 MarkDuplicates Tracking 373956 as yet unmatched pairs. 9685 records in RAM.
INFO 2026-06-08 09:14:49 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr13:45,340,007
INFO 2026-06-08 09:14:49 MarkDuplicates Tracking 374593 as yet unmatched pairs. 10320 records in RAM.
INFO 2026-06-08 09:14:50 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr13:73,059,413
INFO 2026-06-08 09:14:50 MarkDuplicates Tracking 371420 as yet unmatched pairs. 7146 records in RAM.
INFO 2026-06-08 09:14:52 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr13:98,519,453
INFO 2026-06-08 09:14:52 MarkDuplicates Tracking 369794 as yet unmatched pairs. 5520 records in RAM.
INFO 2026-06-08 09:14:54 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr13:110,183,250
INFO 2026-06-08 09:14:54 MarkDuplicates Tracking 368690 as yet unmatched pairs. 4416 records in RAM.
INFO 2026-06-08 09:14:55 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr13:110,506,512
INFO 2026-06-08 09:14:55 MarkDuplicates Tracking 367888 as yet unmatched pairs. 3614 records in RAM.
INFO 2026-06-08 09:14:57 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr14:20,384,140
INFO 2026-06-08 09:14:57 MarkDuplicates Tracking 364653 as yet unmatched pairs. 27683 records in RAM.
INFO 2026-06-08 09:14:59 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr14:22,844,655
INFO 2026-06-08 09:14:59 MarkDuplicates Tracking 363757 as yet unmatched pairs. 26787 records in RAM.
INFO 2026-06-08 09:15:00 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr14:23,959,911
INFO 2026-06-08 09:15:00 MarkDuplicates Tracking 360995 as yet unmatched pairs. 24025 records in RAM.
INFO 2026-06-08 09:15:02 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr14:24,432,341
INFO 2026-06-08 09:15:02 MarkDuplicates Tracking 359399 as yet unmatched pairs. 22429 records in RAM.
INFO 2026-06-08 09:15:04 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr14:39,181,621
INFO 2026-06-08 09:15:04 MarkDuplicates Tracking 357565 as yet unmatched pairs. 20594 records in RAM.
INFO 2026-06-08 09:15:05 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr14:53,950,775
INFO 2026-06-08 09:15:05 MarkDuplicates Tracking 356064 as yet unmatched pairs. 19079 records in RAM.
INFO 2026-06-08 09:15:08 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 2s. Last read position: chr14:63,961,611
INFO 2026-06-08 09:15:08 MarkDuplicates Tracking 354689 as yet unmatched pairs. 17704 records in RAM.
INFO 2026-06-08 09:15:09 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr14:68,789,875
INFO 2026-06-08 09:15:09 MarkDuplicates Tracking 353567 as yet unmatched pairs. 16582 records in RAM.
INFO 2026-06-08 09:15:11 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr14:73,491,780
INFO 2026-06-08 09:15:11 MarkDuplicates Tracking 351754 as yet unmatched pairs. 14765 records in RAM.
INFO 2026-06-08 09:15:13 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr14:75,280,639
INFO 2026-06-08 09:15:13 MarkDuplicates Tracking 352713 as yet unmatched pairs. 15715 records in RAM.
INFO 2026-06-08 09:15:14 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr14:91,273,587
INFO 2026-06-08 09:15:14 MarkDuplicates Tracking 348967 as yet unmatched pairs. 11968 records in RAM.
INFO 2026-06-08 09:15:16 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr14:96,322,630
INFO 2026-06-08 09:15:16 MarkDuplicates Tracking 347357 as yet unmatched pairs. 10357 records in RAM.
INFO 2026-06-08 09:15:17 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr14:102,039,638
INFO 2026-06-08 09:15:17 MarkDuplicates Tracking 346148 as yet unmatched pairs. 9145 records in RAM.
INFO 2026-06-08 09:15:19 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr14:103,675,642
INFO 2026-06-08 09:15:19 MarkDuplicates Tracking 344087 as yet unmatched pairs. 7083 records in RAM.
INFO 2026-06-08 09:15:21 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr14:104,887,807
INFO 2026-06-08 09:15:21 MarkDuplicates Tracking 343290 as yet unmatched pairs. 6286 records in RAM.
INFO 2026-06-08 09:15:22 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr14:105,588,178
INFO 2026-06-08 09:15:22 MarkDuplicates Tracking 343773 as yet unmatched pairs. 6769 records in RAM.
INFO 2026-06-08 09:15:24 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,856
INFO 2026-06-08 09:15:24 MarkDuplicates Tracking 345672 as yet unmatched pairs. 8668 records in RAM.
INFO 2026-06-08 09:15:25 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,001
INFO 2026-06-08 09:15:25 MarkDuplicates Tracking 343893 as yet unmatched pairs. 6888 records in RAM.
INFO 2026-06-08 09:15:27 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr14:105,925,116
INFO 2026-06-08 09:15:27 MarkDuplicates Tracking 337095 as yet unmatched pairs. 90 records in RAM.
INFO 2026-06-08 09:15:29 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr15:30,904,927
INFO 2026-06-08 09:15:29 MarkDuplicates Tracking 336038 as yet unmatched pairs. 23403 records in RAM.
INFO 2026-06-08 09:15:30 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr15:39,581,158
INFO 2026-06-08 09:15:30 MarkDuplicates Tracking 335124 as yet unmatched pairs. 22489 records in RAM.
INFO 2026-06-08 09:15:32 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr15:40,828,429
INFO 2026-06-08 09:15:32 MarkDuplicates Tracking 332969 as yet unmatched pairs. 20321 records in RAM.
INFO 2026-06-08 09:15:33 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr15:43,021,332
INFO 2026-06-08 09:15:33 MarkDuplicates Tracking 331538 as yet unmatched pairs. 18890 records in RAM.
INFO 2026-06-08 09:15:35 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr15:43,793,909
INFO 2026-06-08 09:15:35 MarkDuplicates Tracking 330044 as yet unmatched pairs. 17396 records in RAM.
INFO 2026-06-08 09:15:37 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr15:50,197,654
INFO 2026-06-08 09:15:37 MarkDuplicates Tracking 328320 as yet unmatched pairs. 15672 records in RAM.
INFO 2026-06-08 09:15:38 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr15:58,913,654
INFO 2026-06-08 09:15:38 MarkDuplicates Tracking 327241 as yet unmatched pairs. 14592 records in RAM.
INFO 2026-06-08 09:15:40 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr15:63,061,260
INFO 2026-06-08 09:15:40 MarkDuplicates Tracking 326857 as yet unmatched pairs. 14203 records in RAM.
INFO 2026-06-08 09:15:41 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr15:65,877,850
INFO 2026-06-08 09:15:41 MarkDuplicates Tracking 324472 as yet unmatched pairs. 11818 records in RAM.
INFO 2026-06-08 09:15:43 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 2s. Last read position: chr15:71,902,958
INFO 2026-06-08 09:15:43 MarkDuplicates Tracking 322379 as yet unmatched pairs. 9724 records in RAM.
INFO 2026-06-08 09:15:45 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr15:74,035,611
INFO 2026-06-08 09:15:45 MarkDuplicates Tracking 321443 as yet unmatched pairs. 8788 records in RAM.
INFO 2026-06-08 09:15:47 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr15:76,283,779
INFO 2026-06-08 09:15:47 MarkDuplicates Tracking 319387 as yet unmatched pairs. 6732 records in RAM.
INFO 2026-06-08 09:15:48 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr15:82,536,775
INFO 2026-06-08 09:15:48 MarkDuplicates Tracking 320139 as yet unmatched pairs. 7483 records in RAM.
INFO 2026-06-08 09:15:50 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr15:89,316,390
INFO 2026-06-08 09:15:50 MarkDuplicates Tracking 316264 as yet unmatched pairs. 3608 records in RAM.
INFO 2026-06-08 09:15:53 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 2s. Last read position: chr15:90,491,331
INFO 2026-06-08 09:15:53 MarkDuplicates Tracking 314647 as yet unmatched pairs. 1990 records in RAM.
INFO 2026-06-08 09:15:54 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr15:101,966,149
INFO 2026-06-08 09:15:54 MarkDuplicates Tracking 313164 as yet unmatched pairs. 507 records in RAM.
INFO 2026-06-08 09:15:57 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 2s. Last read position: chr16:642,124
INFO 2026-06-08 09:15:57 MarkDuplicates Tracking 311309 as yet unmatched pairs. 46193 records in RAM.
INFO 2026-06-08 09:15:58 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr16:1,495,509
INFO 2026-06-08 09:15:58 MarkDuplicates Tracking 309013 as yet unmatched pairs. 43897 records in RAM.
INFO 2026-06-08 09:16:00 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr16:2,054,348
INFO 2026-06-08 09:16:00 MarkDuplicates Tracking 306737 as yet unmatched pairs. 41621 records in RAM.
INFO 2026-06-08 09:16:02 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr16:2,262,296
INFO 2026-06-08 09:16:02 MarkDuplicates Tracking 305510 as yet unmatched pairs. 40394 records in RAM.
INFO 2026-06-08 09:16:04 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr16:2,767,049
INFO 2026-06-08 09:16:04 MarkDuplicates Tracking 306108 as yet unmatched pairs. 40992 records in RAM.
INFO 2026-06-08 09:16:05 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr16:3,289,993
INFO 2026-06-08 09:16:05 MarkDuplicates Tracking 301786 as yet unmatched pairs. 36670 records in RAM.
INFO 2026-06-08 09:16:07 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr16:5,031,784
INFO 2026-06-08 09:16:07 MarkDuplicates Tracking 299984 as yet unmatched pairs. 34868 records in RAM.
INFO 2026-06-08 09:16:08 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr16:14,846,656
INFO 2026-06-08 09:16:08 MarkDuplicates Tracking 298810 as yet unmatched pairs. 33693 records in RAM.
INFO 2026-06-08 09:16:10 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr16:15,136,516
INFO 2026-06-08 09:16:10 MarkDuplicates Tracking 297845 as yet unmatched pairs. 32728 records in RAM.
INFO 2026-06-08 09:16:11 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr16:16,321,069
INFO 2026-06-08 09:16:11 MarkDuplicates Tracking 297239 as yet unmatched pairs. 32122 records in RAM.
INFO 2026-06-08 09:16:12 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr16:18,351,037
INFO 2026-06-08 09:16:12 MarkDuplicates Tracking 296903 as yet unmatched pairs. 31786 records in RAM.
INFO 2026-06-08 09:16:14 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr16:18,838,504
INFO 2026-06-08 09:16:14 MarkDuplicates Tracking 295327 as yet unmatched pairs. 30208 records in RAM.
INFO 2026-06-08 09:16:15 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr16:21,422,127
INFO 2026-06-08 09:16:15 MarkDuplicates Tracking 294356 as yet unmatched pairs. 29237 records in RAM.
INFO 2026-06-08 09:16:17 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr16:22,475,126
INFO 2026-06-08 09:16:17 MarkDuplicates Tracking 293670 as yet unmatched pairs. 28550 records in RAM.
INFO 2026-06-08 09:16:18 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr16:24,930,865
INFO 2026-06-08 09:16:18 MarkDuplicates Tracking 292291 as yet unmatched pairs. 27171 records in RAM.
INFO 2026-06-08 09:16:20 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr16:28,714,652
INFO 2026-06-08 09:16:20 MarkDuplicates Tracking 290999 as yet unmatched pairs. 25879 records in RAM.
INFO 2026-06-08 09:16:21 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr16:29,453,675
INFO 2026-06-08 09:16:21 MarkDuplicates Tracking 291798 as yet unmatched pairs. 26678 records in RAM.
INFO 2026-06-08 09:16:22 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr16:29,841,923
INFO 2026-06-08 09:16:22 MarkDuplicates Tracking 289498 as yet unmatched pairs. 24378 records in RAM.
INFO 2026-06-08 09:16:24 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr16:30,193,434
INFO 2026-06-08 09:16:24 MarkDuplicates Tracking 287000 as yet unmatched pairs. 21880 records in RAM.
INFO 2026-06-08 09:16:25 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr16:30,709,854
INFO 2026-06-08 09:16:25 MarkDuplicates Tracking 285891 as yet unmatched pairs. 20771 records in RAM.
INFO 2026-06-08 09:16:27 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr16:31,185,157
INFO 2026-06-08 09:16:27 MarkDuplicates Tracking 286151 as yet unmatched pairs. 21029 records in RAM.
INFO 2026-06-08 09:16:28 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr16:50,305,520
INFO 2026-06-08 09:16:28 MarkDuplicates Tracking 282593 as yet unmatched pairs. 17470 records in RAM.
INFO 2026-06-08 09:16:30 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr16:57,025,816
INFO 2026-06-08 09:16:30 MarkDuplicates Tracking 281795 as yet unmatched pairs. 16672 records in RAM.
INFO 2026-06-08 09:16:32 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr16:58,718,228
INFO 2026-06-08 09:16:32 MarkDuplicates Tracking 279327 as yet unmatched pairs. 14203 records in RAM.
INFO 2026-06-08 09:16:33 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr16:67,444,590
INFO 2026-06-08 09:16:33 MarkDuplicates Tracking 277411 as yet unmatched pairs. 12286 records in RAM.
INFO 2026-06-08 09:16:35 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr16:69,120,151
INFO 2026-06-08 09:16:35 MarkDuplicates Tracking 275899 as yet unmatched pairs. 10773 records in RAM.
INFO 2026-06-08 09:16:36 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr16:70,674,417
INFO 2026-06-08 09:16:36 MarkDuplicates Tracking 274315 as yet unmatched pairs. 9189 records in RAM.
INFO 2026-06-08 09:16:38 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr16:75,242,843
INFO 2026-06-08 09:16:38 MarkDuplicates Tracking 274178 as yet unmatched pairs. 9050 records in RAM.
INFO 2026-06-08 09:16:39 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr16:84,764,158
INFO 2026-06-08 09:16:39 MarkDuplicates Tracking 270906 as yet unmatched pairs. 5777 records in RAM.
INFO 2026-06-08 09:16:41 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr16:88,623,251
INFO 2026-06-08 09:16:41 MarkDuplicates Tracking 269179 as yet unmatched pairs. 4049 records in RAM.
INFO 2026-06-08 09:16:43 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr16:89,316,965
INFO 2026-06-08 09:16:43 MarkDuplicates Tracking 267533 as yet unmatched pairs. 2403 records in RAM.
INFO 2026-06-08 09:16:45 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 2s. Last read position: chr17:215,765
INFO 2026-06-08 09:16:45 MarkDuplicates Tracking 265205 as yet unmatched pairs. 93371 records in RAM.
INFO 2026-06-08 09:16:46 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr17:1,673,466
INFO 2026-06-08 09:16:46 MarkDuplicates Tracking 264280 as yet unmatched pairs. 92446 records in RAM.
INFO 2026-06-08 09:16:49 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 2s. Last read position: chr17:3,724,118
INFO 2026-06-08 09:16:49 MarkDuplicates Tracking 261700 as yet unmatched pairs. 89866 records in RAM.
INFO 2026-06-08 09:16:51 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr17:4,833,488
INFO 2026-06-08 09:16:51 MarkDuplicates Tracking 260335 as yet unmatched pairs. 88501 records in RAM.
INFO 2026-06-08 09:16:52 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr17:6,474,565
INFO 2026-06-08 09:16:52 MarkDuplicates Tracking 258542 as yet unmatched pairs. 86708 records in RAM.
INFO 2026-06-08 09:16:53 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr17:7,390,660
INFO 2026-06-08 09:16:53 MarkDuplicates Tracking 257067 as yet unmatched pairs. 85232 records in RAM.
INFO 2026-06-08 09:16:55 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr17:7,845,677
INFO 2026-06-08 09:16:55 MarkDuplicates Tracking 255900 as yet unmatched pairs. 84065 records in RAM.
INFO 2026-06-08 09:16:57 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr17:8,569,740
INFO 2026-06-08 09:16:57 MarkDuplicates Tracking 254262 as yet unmatched pairs. 82427 records in RAM.
INFO 2026-06-08 09:16:59 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr17:17,131,624
INFO 2026-06-08 09:16:59 MarkDuplicates Tracking 253227 as yet unmatched pairs. 81390 records in RAM.
INFO 2026-06-08 09:17:01 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 2s. Last read position: chr17:18,263,840
INFO 2026-06-08 09:17:01 MarkDuplicates Tracking 250660 as yet unmatched pairs. 78823 records in RAM.
INFO 2026-06-08 09:17:03 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr17:28,168,636
INFO 2026-06-08 09:17:03 MarkDuplicates Tracking 249087 as yet unmatched pairs. 77250 records in RAM.
INFO 2026-06-08 09:17:05 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr17:29,118,428
INFO 2026-06-08 09:17:05 MarkDuplicates Tracking 248148 as yet unmatched pairs. 76311 records in RAM.
INFO 2026-06-08 09:17:06 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr17:32,653,858
INFO 2026-06-08 09:17:06 MarkDuplicates Tracking 246332 as yet unmatched pairs. 74481 records in RAM.
INFO 2026-06-08 09:17:08 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr17:37,263,827
INFO 2026-06-08 09:17:08 MarkDuplicates Tracking 245056 as yet unmatched pairs. 73205 records in RAM.
INFO 2026-06-08 09:17:09 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr17:38,853,033
INFO 2026-06-08 09:17:09 MarkDuplicates Tracking 243555 as yet unmatched pairs. 71704 records in RAM.
INFO 2026-06-08 09:17:11 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr17:39,723,419
INFO 2026-06-08 09:17:11 MarkDuplicates Tracking 244204 as yet unmatched pairs. 72353 records in RAM.
INFO 2026-06-08 09:17:13 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr17:40,453,947
INFO 2026-06-08 09:17:13 MarkDuplicates Tracking 241342 as yet unmatched pairs. 69491 records in RAM.
INFO 2026-06-08 09:17:14 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr17:41,898,644
INFO 2026-06-08 09:17:14 MarkDuplicates Tracking 239247 as yet unmatched pairs. 67396 records in RAM.
INFO 2026-06-08 09:17:16 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr17:42,819,530
INFO 2026-06-08 09:17:16 MarkDuplicates Tracking 236978 as yet unmatched pairs. 65119 records in RAM.
INFO 2026-06-08 09:17:18 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr17:44,349,492
INFO 2026-06-08 09:17:18 MarkDuplicates Tracking 236536 as yet unmatched pairs. 64658 records in RAM.
INFO 2026-06-08 09:17:19 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr17:46,296,708
INFO 2026-06-08 09:17:19 MarkDuplicates Tracking 233195 as yet unmatched pairs. 61317 records in RAM.
INFO 2026-06-08 09:17:21 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr17:48,543,490
INFO 2026-06-08 09:17:21 MarkDuplicates Tracking 231820 as yet unmatched pairs. 59942 records in RAM.
INFO 2026-06-08 09:17:22 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,787
INFO 2026-06-08 09:17:22 MarkDuplicates Tracking 238707 as yet unmatched pairs. 66829 records in RAM.
INFO 2026-06-08 09:17:24 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,881
INFO 2026-06-08 09:17:24 MarkDuplicates Tracking 247379 as yet unmatched pairs. 75501 records in RAM.
INFO 2026-06-08 09:17:26 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,875
INFO 2026-06-08 09:17:26 MarkDuplicates Tracking 295631 as yet unmatched pairs. 123753 records in RAM.
INFO 2026-06-08 09:17:28 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,119
INFO 2026-06-08 09:17:28 MarkDuplicates Tracking 300704 as yet unmatched pairs. 128826 records in RAM.
INFO 2026-06-08 09:17:29 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,776
INFO 2026-06-08 09:17:29 MarkDuplicates Tracking 298974 as yet unmatched pairs. 127096 records in RAM.
INFO 2026-06-08 09:17:31 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,378
INFO 2026-06-08 09:17:31 MarkDuplicates Tracking 268771 as yet unmatched pairs. 96893 records in RAM.
INFO 2026-06-08 09:17:34 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,689
INFO 2026-06-08 09:17:34 MarkDuplicates Tracking 304066 as yet unmatched pairs. 132188 records in RAM.
INFO 2026-06-08 09:17:36 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,077
INFO 2026-06-08 09:17:36 MarkDuplicates Tracking 296770 as yet unmatched pairs. 124892 records in RAM.
INFO 2026-06-08 09:17:38 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,874
INFO 2026-06-08 09:17:38 MarkDuplicates Tracking 246539 as yet unmatched pairs. 74661 records in RAM.
INFO 2026-06-08 09:17:40 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,834
INFO 2026-06-08 09:17:40 MarkDuplicates Tracking 286674 as yet unmatched pairs. 114796 records in RAM.
INFO 2026-06-08 09:17:42 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,652
INFO 2026-06-08 09:17:42 MarkDuplicates Tracking 283727 as yet unmatched pairs. 111848 records in RAM.
INFO 2026-06-08 09:17:43 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,029
INFO 2026-06-08 09:17:43 MarkDuplicates Tracking 298787 as yet unmatched pairs. 126908 records in RAM.
INFO 2026-06-08 09:17:45 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,136
INFO 2026-06-08 09:17:45 MarkDuplicates Tracking 318335 as yet unmatched pairs. 146456 records in RAM.
INFO 2026-06-08 09:17:47 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,597
INFO 2026-06-08 09:17:47 MarkDuplicates Tracking 256218 as yet unmatched pairs. 84339 records in RAM.
INFO 2026-06-08 09:17:49 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,231
INFO 2026-06-08 09:17:49 MarkDuplicates Tracking 261216 as yet unmatched pairs. 89337 records in RAM.
INFO 2026-06-08 09:17:51 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,591
INFO 2026-06-08 09:17:51 MarkDuplicates Tracking 284045 as yet unmatched pairs. 112166 records in RAM.
INFO 2026-06-08 09:17:52 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,164
INFO 2026-06-08 09:17:52 MarkDuplicates Tracking 298841 as yet unmatched pairs. 126962 records in RAM.
INFO 2026-06-08 09:17:54 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,512
INFO 2026-06-08 09:17:54 MarkDuplicates Tracking 270535 as yet unmatched pairs. 98656 records in RAM.
INFO 2026-06-08 09:17:56 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,218
INFO 2026-06-08 09:17:56 MarkDuplicates Tracking 283755 as yet unmatched pairs. 111876 records in RAM.
INFO 2026-06-08 09:17:58 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 2s. Last read position: chr17:50,198,447
INFO 2026-06-08 09:17:58 MarkDuplicates Tracking 252289 as yet unmatched pairs. 80410 records in RAM.
INFO 2026-06-08 09:18:01 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 2s. Last read position: chr17:50,199,556
INFO 2026-06-08 09:18:01 MarkDuplicates Tracking 227108 as yet unmatched pairs. 55229 records in RAM.
INFO 2026-06-08 09:18:02 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr17:50,549,153
INFO 2026-06-08 09:18:02 MarkDuplicates Tracking 195371 as yet unmatched pairs. 23492 records in RAM.
INFO 2026-06-08 09:18:04 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr17:58,311,571
INFO 2026-06-08 09:18:04 MarkDuplicates Tracking 193670 as yet unmatched pairs. 21791 records in RAM.
INFO 2026-06-08 09:18:06 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr17:60,747,254
INFO 2026-06-08 09:18:06 MarkDuplicates Tracking 192205 as yet unmatched pairs. 20326 records in RAM.
INFO 2026-06-08 09:18:07 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr17:64,503,236
INFO 2026-06-08 09:18:07 MarkDuplicates Tracking 191458 as yet unmatched pairs. 19579 records in RAM.
INFO 2026-06-08 09:18:09 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr17:72,121,781
INFO 2026-06-08 09:18:09 MarkDuplicates Tracking 189476 as yet unmatched pairs. 17597 records in RAM.
INFO 2026-06-08 09:18:10 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr17:75,239,067
INFO 2026-06-08 09:18:10 MarkDuplicates Tracking 187685 as yet unmatched pairs. 15806 records in RAM.
INFO 2026-06-08 09:18:12 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr17:75,750,892
INFO 2026-06-08 09:18:12 MarkDuplicates Tracking 185887 as yet unmatched pairs. 14008 records in RAM.
INFO 2026-06-08 09:18:14 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr17:76,477,210
INFO 2026-06-08 09:18:14 MarkDuplicates Tracking 183806 as yet unmatched pairs. 11927 records in RAM.
INFO 2026-06-08 09:18:15 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr17:78,855,577
INFO 2026-06-08 09:18:15 MarkDuplicates Tracking 182423 as yet unmatched pairs. 10544 records in RAM.
INFO 2026-06-08 09:18:17 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr17:80,309,105
INFO 2026-06-08 09:18:17 MarkDuplicates Tracking 180683 as yet unmatched pairs. 8804 records in RAM.
INFO 2026-06-08 09:18:18 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr17:81,277,072
INFO 2026-06-08 09:18:18 MarkDuplicates Tracking 178996 as yet unmatched pairs. 7117 records in RAM.
INFO 2026-06-08 09:18:20 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 2s. Last read position: chr17:81,844,067
INFO 2026-06-08 09:18:20 MarkDuplicates Tracking 181773 as yet unmatched pairs. 9894 records in RAM.
INFO 2026-06-08 09:18:22 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr17:82,019,641
INFO 2026-06-08 09:18:22 MarkDuplicates Tracking 175112 as yet unmatched pairs. 3233 records in RAM.
INFO 2026-06-08 09:18:24 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr17:82,236,200
INFO 2026-06-08 09:18:24 MarkDuplicates Tracking 173981 as yet unmatched pairs. 2102 records in RAM.
INFO 2026-06-08 09:18:26 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr18:3,447,689
INFO 2026-06-08 09:18:26 MarkDuplicates Tracking 171391 as yet unmatched pairs. 7333 records in RAM.
INFO 2026-06-08 09:18:28 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr18:22,171,182
INFO 2026-06-08 09:18:28 MarkDuplicates Tracking 170191 as yet unmatched pairs. 6131 records in RAM.
INFO 2026-06-08 09:18:29 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr18:39,335,443
INFO 2026-06-08 09:18:29 MarkDuplicates Tracking 168352 as yet unmatched pairs. 4291 records in RAM.
INFO 2026-06-08 09:18:31 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr18:54,203,001
INFO 2026-06-08 09:18:31 MarkDuplicates Tracking 167224 as yet unmatched pairs. 3163 records in RAM.
INFO 2026-06-08 09:18:32 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr18:74,505,994
INFO 2026-06-08 09:18:32 MarkDuplicates Tracking 165214 as yet unmatched pairs. 1153 records in RAM.
INFO 2026-06-08 09:18:35 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 2s. Last read position: chr19:581,552
INFO 2026-06-08 09:18:35 MarkDuplicates Tracking 169848 as yet unmatched pairs. 87928 records in RAM.
INFO 2026-06-08 09:18:36 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr19:1,010,451
INFO 2026-06-08 09:18:36 MarkDuplicates Tracking 163749 as yet unmatched pairs. 81829 records in RAM.
INFO 2026-06-08 09:18:38 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr19:1,255,654
INFO 2026-06-08 09:18:38 MarkDuplicates Tracking 160188 as yet unmatched pairs. 78268 records in RAM.
INFO 2026-06-08 09:18:39 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chr19:1,621,178
INFO 2026-06-08 09:18:39 MarkDuplicates Tracking 157805 as yet unmatched pairs. 75881 records in RAM.
INFO 2026-06-08 09:18:41 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr19:2,246,664
INFO 2026-06-08 09:18:41 MarkDuplicates Tracking 155678 as yet unmatched pairs. 73754 records in RAM.
INFO 2026-06-08 09:18:43 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr19:3,531,713
INFO 2026-06-08 09:18:43 MarkDuplicates Tracking 153818 as yet unmatched pairs. 71894 records in RAM.
INFO 2026-06-08 09:18:44 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chr19:4,325,472
INFO 2026-06-08 09:18:44 MarkDuplicates Tracking 152090 as yet unmatched pairs. 70166 records in RAM.
INFO 2026-06-08 09:18:46 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 1s. Last read position: chr19:5,661,636
INFO 2026-06-08 09:18:46 MarkDuplicates Tracking 150076 as yet unmatched pairs. 68152 records in RAM.
INFO 2026-06-08 09:18:48 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 1s. Last read position: chr19:6,374,244
INFO 2026-06-08 09:18:48 MarkDuplicates Tracking 149340 as yet unmatched pairs. 67415 records in RAM.
INFO 2026-06-08 09:20:56 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 128s. Last read position: chr19:7,441,906
INFO 2026-06-08 09:20:56 MarkDuplicates Tracking 146687 as yet unmatched pairs. 64762 records in RAM.
INFO 2026-06-08 09:20:58 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr19:8,485,614
INFO 2026-06-08 09:20:58 MarkDuplicates Tracking 145571 as yet unmatched pairs. 63643 records in RAM.
INFO 2026-06-08 09:21:00 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr19:10,321,494
INFO 2026-06-08 09:21:00 MarkDuplicates Tracking 143902 as yet unmatched pairs. 61974 records in RAM.
INFO 2026-06-08 09:21:01 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr19:10,835,323
INFO 2026-06-08 09:21:01 MarkDuplicates Tracking 141400 as yet unmatched pairs. 59472 records in RAM.
INFO 2026-06-08 09:21:03 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr19:11,447,156
INFO 2026-06-08 09:21:03 MarkDuplicates Tracking 140231 as yet unmatched pairs. 58303 records in RAM.
INFO 2026-06-08 09:21:05 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr19:12,792,839
INFO 2026-06-08 09:21:05 MarkDuplicates Tracking 137987 as yet unmatched pairs. 56059 records in RAM.
INFO 2026-06-08 09:21:06 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr19:13,918,536
INFO 2026-06-08 09:21:06 MarkDuplicates Tracking 136403 as yet unmatched pairs. 54475 records in RAM.
INFO 2026-06-08 09:21:08 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chr19:14,516,704
INFO 2026-06-08 09:21:08 MarkDuplicates Tracking 144562 as yet unmatched pairs. 62634 records in RAM.
INFO 2026-06-08 09:21:10 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chr19:15,239,456
INFO 2026-06-08 09:21:10 MarkDuplicates Tracking 132894 as yet unmatched pairs. 50966 records in RAM.
INFO 2026-06-08 09:21:11 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chr19:16,576,036
INFO 2026-06-08 09:21:11 MarkDuplicates Tracking 130428 as yet unmatched pairs. 48500 records in RAM.
INFO 2026-06-08 09:21:13 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr19:17,808,267
INFO 2026-06-08 09:21:13 MarkDuplicates Tracking 128966 as yet unmatched pairs. 47038 records in RAM.
INFO 2026-06-08 09:21:15 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 1s. Last read position: chr19:18,388,661
INFO 2026-06-08 09:21:15 MarkDuplicates Tracking 129930 as yet unmatched pairs. 48002 records in RAM.
INFO 2026-06-08 09:21:17 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr19:19,057,414
INFO 2026-06-08 09:21:17 MarkDuplicates Tracking 125530 as yet unmatched pairs. 43602 records in RAM.
INFO 2026-06-08 09:21:18 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr19:33,379,295
INFO 2026-06-08 09:21:18 MarkDuplicates Tracking 124114 as yet unmatched pairs. 42186 records in RAM.
INFO 2026-06-08 09:21:20 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr19:35,267,631
INFO 2026-06-08 09:21:20 MarkDuplicates Tracking 123174 as yet unmatched pairs. 41246 records in RAM.
INFO 2026-06-08 09:21:21 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr19:37,185,759
INFO 2026-06-08 09:21:21 MarkDuplicates Tracking 119503 as yet unmatched pairs. 37575 records in RAM.
INFO 2026-06-08 09:21:23 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr19:38,729,279
INFO 2026-06-08 09:21:23 MarkDuplicates Tracking 119446 as yet unmatched pairs. 37518 records in RAM.
INFO 2026-06-08 09:21:25 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr19:39,408,303
INFO 2026-06-08 09:21:25 MarkDuplicates Tracking 117231 as yet unmatched pairs. 35303 records in RAM.
INFO 2026-06-08 09:21:27 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr19:39,875,534
INFO 2026-06-08 09:21:27 MarkDuplicates Tracking 120888 as yet unmatched pairs. 38960 records in RAM.
INFO 2026-06-08 09:21:28 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr19:39,886,405
INFO 2026-06-08 09:21:28 MarkDuplicates Tracking 121130 as yet unmatched pairs. 39202 records in RAM.
INFO 2026-06-08 09:21:30 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr19:39,894,087
INFO 2026-06-08 09:21:30 MarkDuplicates Tracking 117886 as yet unmatched pairs. 35958 records in RAM.
INFO 2026-06-08 09:21:32 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr19:39,918,366
INFO 2026-06-08 09:21:32 MarkDuplicates Tracking 114682 as yet unmatched pairs. 32754 records in RAM.
INFO 2026-06-08 09:21:33 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr19:40,614,314
INFO 2026-06-08 09:21:33 MarkDuplicates Tracking 110224 as yet unmatched pairs. 28296 records in RAM.
INFO 2026-06-08 09:21:35 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr19:41,717,627
INFO 2026-06-08 09:21:35 MarkDuplicates Tracking 110705 as yet unmatched pairs. 28777 records in RAM.
INFO 2026-06-08 09:21:37 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr19:42,249,448
INFO 2026-06-08 09:21:37 MarkDuplicates Tracking 107461 as yet unmatched pairs. 25533 records in RAM.
INFO 2026-06-08 09:21:38 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr19:43,592,443
INFO 2026-06-08 09:21:38 MarkDuplicates Tracking 104894 as yet unmatched pairs. 22964 records in RAM.
INFO 2026-06-08 09:21:40 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr19:44,909,138
INFO 2026-06-08 09:21:40 MarkDuplicates Tracking 104187 as yet unmatched pairs. 22257 records in RAM.
INFO 2026-06-08 09:21:42 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr19:45,771,021
INFO 2026-06-08 09:21:42 MarkDuplicates Tracking 101192 as yet unmatched pairs. 19262 records in RAM.
INFO 2026-06-08 09:21:43 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr19:47,048,550
INFO 2026-06-08 09:21:43 MarkDuplicates Tracking 98981 as yet unmatched pairs. 17051 records in RAM.
INFO 2026-06-08 09:21:45 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr19:48,474,898
INFO 2026-06-08 09:21:45 MarkDuplicates Tracking 97377 as yet unmatched pairs. 15447 records in RAM.
INFO 2026-06-08 09:21:47 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr19:48,955,762
INFO 2026-06-08 09:21:47 MarkDuplicates Tracking 96845 as yet unmatched pairs. 14915 records in RAM.
INFO 2026-06-08 09:21:49 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr19:49,490,780
INFO 2026-06-08 09:21:49 MarkDuplicates Tracking 98198 as yet unmatched pairs. 16268 records in RAM.
INFO 2026-06-08 09:21:51 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr19:49,686,211
INFO 2026-06-08 09:21:51 MarkDuplicates Tracking 92715 as yet unmatched pairs. 10785 records in RAM.
INFO 2026-06-08 09:21:52 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr19:50,309,721
INFO 2026-06-08 09:21:52 MarkDuplicates Tracking 90657 as yet unmatched pairs. 8727 records in RAM.
INFO 2026-06-08 09:21:54 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 2s. Last read position: chr19:53,563,197
INFO 2026-06-08 09:21:54 MarkDuplicates Tracking 88608 as yet unmatched pairs. 6678 records in RAM.
INFO 2026-06-08 09:21:56 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr19:54,460,849
INFO 2026-06-08 09:21:56 MarkDuplicates Tracking 87386 as yet unmatched pairs. 5455 records in RAM.
INFO 2026-06-08 09:21:58 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr19:55,453,369
INFO 2026-06-08 09:21:58 MarkDuplicates Tracking 86088 as yet unmatched pairs. 4157 records in RAM.
INFO 2026-06-08 09:22:00 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr19:57,877,013
INFO 2026-06-08 09:22:00 MarkDuplicates Tracking 83347 as yet unmatched pairs. 1416 records in RAM.
INFO 2026-06-08 09:22:02 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr20:487,449
INFO 2026-06-08 09:22:02 MarkDuplicates Tracking 81652 as yet unmatched pairs. 20793 records in RAM.
INFO 2026-06-08 09:22:03 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr20:3,796,693
INFO 2026-06-08 09:22:03 MarkDuplicates Tracking 81296 as yet unmatched pairs. 20437 records in RAM.
INFO 2026-06-08 09:22:05 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr20:17,625,550
INFO 2026-06-08 09:22:05 MarkDuplicates Tracking 79625 as yet unmatched pairs. 18766 records in RAM.
INFO 2026-06-08 09:22:06 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr20:22,582,153
INFO 2026-06-08 09:22:06 MarkDuplicates Tracking 76787 as yet unmatched pairs. 15928 records in RAM.
INFO 2026-06-08 09:22:08 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr20:32,433,494
INFO 2026-06-08 09:22:08 MarkDuplicates Tracking 74883 as yet unmatched pairs. 14024 records in RAM.
INFO 2026-06-08 09:22:10 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr20:35,279,733
INFO 2026-06-08 09:22:10 MarkDuplicates Tracking 74142 as yet unmatched pairs. 13283 records in RAM.
INFO 2026-06-08 09:22:12 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 2s. Last read position: chr20:37,301,209
INFO 2026-06-08 09:22:12 MarkDuplicates Tracking 71731 as yet unmatched pairs. 10872 records in RAM.
INFO 2026-06-08 09:22:13 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr20:45,176,018
INFO 2026-06-08 09:22:13 MarkDuplicates Tracking 72029 as yet unmatched pairs. 11170 records in RAM.
INFO 2026-06-08 09:22:15 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr20:48,679,329
INFO 2026-06-08 09:22:15 MarkDuplicates Tracking 68500 as yet unmatched pairs. 7641 records in RAM.
INFO 2026-06-08 09:22:19 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 3s. Last read position: chr20:56,516,973
INFO 2026-06-08 09:22:19 MarkDuplicates Tracking 67246 as yet unmatched pairs. 6387 records in RAM.
INFO 2026-06-08 09:22:21 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 2s. Last read position: chr20:62,313,766
INFO 2026-06-08 09:22:21 MarkDuplicates Tracking 65616 as yet unmatched pairs. 4757 records in RAM.
INFO 2026-06-08 09:22:22 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr20:63,202,875
INFO 2026-06-08 09:22:22 MarkDuplicates Tracking 63818 as yet unmatched pairs. 2958 records in RAM.
INFO 2026-06-08 09:22:24 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr20:63,931,494
INFO 2026-06-08 09:22:24 MarkDuplicates Tracking 61448 as yet unmatched pairs. 588 records in RAM.
INFO 2026-06-08 09:22:26 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr21:8,217,331
INFO 2026-06-08 09:22:26 MarkDuplicates Tracking 59927 as yet unmatched pairs. 13122 records in RAM.
INFO 2026-06-08 09:22:27 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr21:8,443,259
INFO 2026-06-08 09:22:27 MarkDuplicates Tracking 62324 as yet unmatched pairs. 15519 records in RAM.
INFO 2026-06-08 09:22:28 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr21:25,362,252
INFO 2026-06-08 09:22:28 MarkDuplicates Tracking 57868 as yet unmatched pairs. 11063 records in RAM.
INFO 2026-06-08 09:22:29 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr21:33,403,482
INFO 2026-06-08 09:22:29 MarkDuplicates Tracking 57020 as yet unmatched pairs. 10215 records in RAM.
INFO 2026-06-08 09:22:31 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr21:37,472,848
INFO 2026-06-08 09:22:31 MarkDuplicates Tracking 55059 as yet unmatched pairs. 8254 records in RAM.
INFO 2026-06-08 09:22:33 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr21:42,312,175
INFO 2026-06-08 09:22:33 MarkDuplicates Tracking 69992 as yet unmatched pairs. 23187 records in RAM.
INFO 2026-06-08 09:22:34 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr21:44,103,313
INFO 2026-06-08 09:22:34 MarkDuplicates Tracking 51872 as yet unmatched pairs. 5067 records in RAM.
INFO 2026-06-08 09:22:37 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 2s. Last read position: chr21:45,509,542
INFO 2026-06-08 09:22:37 MarkDuplicates Tracking 50753 as yet unmatched pairs. 3948 records in RAM.
INFO 2026-06-08 09:22:38 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr21:46,124,902
INFO 2026-06-08 09:22:38 MarkDuplicates Tracking 50066 as yet unmatched pairs. 3261 records in RAM.
INFO 2026-06-08 09:22:40 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr22:18,078,463
INFO 2026-06-08 09:22:40 MarkDuplicates Tracking 46525 as yet unmatched pairs. 24271 records in RAM.
INFO 2026-06-08 09:22:42 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr22:20,726,519
INFO 2026-06-08 09:22:42 MarkDuplicates Tracking 44868 as yet unmatched pairs. 22614 records in RAM.
INFO 2026-06-08 09:22:43 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr22:23,312,971
INFO 2026-06-08 09:22:43 MarkDuplicates Tracking 43782 as yet unmatched pairs. 21512 records in RAM.
INFO 2026-06-08 09:22:45 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr22:25,040,413
INFO 2026-06-08 09:22:45 MarkDuplicates Tracking 41724 as yet unmatched pairs. 19454 records in RAM.
INFO 2026-06-08 09:22:47 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr22:29,299,652
INFO 2026-06-08 09:22:47 MarkDuplicates Tracking 41804 as yet unmatched pairs. 19534 records in RAM.
INFO 2026-06-08 09:22:48 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr22:31,133,909
INFO 2026-06-08 09:22:48 MarkDuplicates Tracking 38779 as yet unmatched pairs. 16509 records in RAM.
INFO 2026-06-08 09:22:50 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr22:36,284,402
INFO 2026-06-08 09:22:50 MarkDuplicates Tracking 37679 as yet unmatched pairs. 15409 records in RAM.
INFO 2026-06-08 09:22:51 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr22:37,024,130
INFO 2026-06-08 09:22:51 MarkDuplicates Tracking 35933 as yet unmatched pairs. 13663 records in RAM.
INFO 2026-06-08 09:22:53 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr22:37,925,981
INFO 2026-06-08 09:22:53 MarkDuplicates Tracking 33506 as yet unmatched pairs. 11236 records in RAM.
INFO 2026-06-08 09:22:55 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr22:39,317,528
INFO 2026-06-08 09:22:55 MarkDuplicates Tracking 33393 as yet unmatched pairs. 11123 records in RAM.
INFO 2026-06-08 09:22:56 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr22:41,301,731
INFO 2026-06-08 09:22:56 MarkDuplicates Tracking 30172 as yet unmatched pairs. 7898 records in RAM.
INFO 2026-06-08 09:22:58 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 2s. Last read position: chr22:42,596,330
INFO 2026-06-08 09:22:58 MarkDuplicates Tracking 28909 as yet unmatched pairs. 6633 records in RAM.
INFO 2026-06-08 09:23:00 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr22:46,533,976
INFO 2026-06-08 09:23:00 MarkDuplicates Tracking 27410 as yet unmatched pairs. 5134 records in RAM.
INFO 2026-06-08 09:23:02 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr22:50,278,182
INFO 2026-06-08 09:23:02 MarkDuplicates Tracking 26807 as yet unmatched pairs. 4531 records in RAM.
INFO 2026-06-08 09:23:03 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr22:50,523,609
INFO 2026-06-08 09:23:03 MarkDuplicates Tracking 23780 as yet unmatched pairs. 1504 records in RAM.
INFO 2026-06-08 09:23:05 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chrX:2,935,005
INFO 2026-06-08 09:23:05 MarkDuplicates Tracking 21436 as yet unmatched pairs. 18259 records in RAM.
INFO 2026-06-08 09:23:07 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chrX:18,920,041
INFO 2026-06-08 09:23:07 MarkDuplicates Tracking 19934 as yet unmatched pairs. 16754 records in RAM.
INFO 2026-06-08 09:23:08 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chrX:40,077,854
INFO 2026-06-08 09:23:08 MarkDuplicates Tracking 18750 as yet unmatched pairs. 15568 records in RAM.
INFO 2026-06-08 09:23:10 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chrX:47,210,894
INFO 2026-06-08 09:23:10 MarkDuplicates Tracking 17910 as yet unmatched pairs. 14728 records in RAM.
INFO 2026-06-08 09:23:12 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chrX:49,030,209
INFO 2026-06-08 09:23:12 MarkDuplicates Tracking 16710 as yet unmatched pairs. 13528 records in RAM.
INFO 2026-06-08 09:23:13 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chrX:53,433,727
INFO 2026-06-08 09:23:13 MarkDuplicates Tracking 14667 as yet unmatched pairs. 11485 records in RAM.
INFO 2026-06-08 09:23:15 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chrX:66,266,571
INFO 2026-06-08 09:23:15 MarkDuplicates Tracking 13735 as yet unmatched pairs. 10553 records in RAM.
INFO 2026-06-08 09:23:16 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chrX:72,272,736
INFO 2026-06-08 09:23:16 MarkDuplicates Tracking 14841 as yet unmatched pairs. 11659 records in RAM.
INFO 2026-06-08 09:23:18 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chrX:101,391,754
INFO 2026-06-08 09:23:18 MarkDuplicates Tracking 12685 as yet unmatched pairs. 9503 records in RAM.
INFO 2026-06-08 09:23:20 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chrX:120,441,820
INFO 2026-06-08 09:23:20 MarkDuplicates Tracking 8734 as yet unmatched pairs. 5552 records in RAM.
INFO 2026-06-08 09:23:22 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chrX:152,850,293
INFO 2026-06-08 09:23:22 MarkDuplicates Tracking 7423 as yet unmatched pairs. 4241 records in RAM.
INFO 2026-06-08 09:23:23 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chrX:154,018,289
INFO 2026-06-08 09:23:23 MarkDuplicates Tracking 6278 as yet unmatched pairs. 3096 records in RAM.
INFO 2026-06-08 09:23:25 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chrX:154,371,157
INFO 2026-06-08 09:23:25 MarkDuplicates Tracking 5117 as yet unmatched pairs. 1935 records in RAM.
INFO 2026-06-08 09:23:27 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,121
INFO 2026-06-08 09:23:27 MarkDuplicates Tracking 3022 as yet unmatched pairs. 1196 records in RAM.
INFO 2026-06-08 09:23:28 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,077
INFO 2026-06-08 09:23:28 MarkDuplicates Tracking 1955 as yet unmatched pairs. 129 records in RAM.
INFO 2026-06-08 09:23:29 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: KI270733.1:125,454
INFO 2026-06-08 09:23:29 MarkDuplicates Tracking 1786 as yet unmatched pairs. 1648 records in RAM.
INFO 2026-06-08 09:23:30 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: KI270733.1:177,488
INFO 2026-06-08 09:23:30 MarkDuplicates Tracking 152 as yet unmatched pairs. 14 records in RAM.
INFO 2026-06-08 09:23:31 MarkDuplicates Read 590446900 records. 0 pairs never matched.
INFO 2026-06-08 09:24:01 MarkDuplicates After buildSortedReadEndLists freeMemory: 204142312; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:24:01 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:24:08 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:24:08 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:25:30 OpticalDuplicateFinder Large duplicate set. size = 1338
INFO 2026-06-08 09:25:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,255
INFO 2026-06-08 09:25:31 OpticalDuplicateFinder Large duplicate set. size = 1571
INFO 2026-06-08 09:25:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,937
INFO 2026-06-08 09:25:31 OpticalDuplicateFinder Large duplicate set. size = 1300
INFO 2026-06-08 09:25:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,845
INFO 2026-06-08 09:25:31 OpticalDuplicateFinder Large duplicate set. size = 1107
INFO 2026-06-08 09:25:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,621
INFO 2026-06-08 09:25:31 OpticalDuplicateFinder Large duplicate set. size = 1415
INFO 2026-06-08 09:25:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,818
INFO 2026-06-08 09:25:32 OpticalDuplicateFinder Large duplicate set. size = 1050
INFO 2026-06-08 09:25:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,037
INFO 2026-06-08 09:25:32 OpticalDuplicateFinder Large duplicate set. size = 1268
INFO 2026-06-08 09:25:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,262
INFO 2026-06-08 09:25:32 OpticalDuplicateFinder Large duplicate set. size = 1466
INFO 2026-06-08 09:25:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,356
INFO 2026-06-08 09:25:32 OpticalDuplicateFinder Large duplicate set. size = 1032
INFO 2026-06-08 09:25:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,107
INFO 2026-06-08 09:25:32 OpticalDuplicateFinder Large duplicate set. size = 1103
INFO 2026-06-08 09:25:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,688
INFO 2026-06-08 09:25:32 OpticalDuplicateFinder Large duplicate set. size = 1106
INFO 2026-06-08 09:25:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,379
INFO 2026-06-08 09:25:32 OpticalDuplicateFinder Large duplicate set. size = 1439
INFO 2026-06-08 09:25:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,637
INFO 2026-06-08 09:25:32 OpticalDuplicateFinder Large duplicate set. size = 1168
INFO 2026-06-08 09:25:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,313
INFO 2026-06-08 09:25:32 OpticalDuplicateFinder Large duplicate set. size = 1035
INFO 2026-06-08 09:25:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,851
INFO 2026-06-08 09:25:32 OpticalDuplicateFinder Large duplicate set. size = 1390
INFO 2026-06-08 09:25:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,867
INFO 2026-06-08 09:25:32 OpticalDuplicateFinder Large duplicate set. size = 1445
INFO 2026-06-08 09:25:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,968
INFO 2026-06-08 09:25:32 OpticalDuplicateFinder Large duplicate set. size = 1206
INFO 2026-06-08 09:25:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,554
INFO 2026-06-08 09:25:33 OpticalDuplicateFinder Large duplicate set. size = 1022
INFO 2026-06-08 09:25:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,991
INFO 2026-06-08 09:25:33 OpticalDuplicateFinder Large duplicate set. size = 1009
INFO 2026-06-08 09:25:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,959
INFO 2026-06-08 09:25:33 OpticalDuplicateFinder Large duplicate set. size = 1043
INFO 2026-06-08 09:25:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,524
INFO 2026-06-08 09:25:33 OpticalDuplicateFinder Large duplicate set. size = 1259
INFO 2026-06-08 09:25:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,812
INFO 2026-06-08 09:25:33 OpticalDuplicateFinder Large duplicate set. size = 1387
INFO 2026-06-08 09:25:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,487
INFO 2026-06-08 09:25:33 OpticalDuplicateFinder Large duplicate set. size = 1933
INFO 2026-06-08 09:25:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,056
INFO 2026-06-08 09:25:33 OpticalDuplicateFinder Large duplicate set. size = 1182
INFO 2026-06-08 09:25:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,130
INFO 2026-06-08 09:25:33 OpticalDuplicateFinder Large duplicate set. size = 1072
INFO 2026-06-08 09:25:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,756
INFO 2026-06-08 09:25:33 OpticalDuplicateFinder Large duplicate set. size = 2024
INFO 2026-06-08 09:25:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,160
INFO 2026-06-08 09:25:33 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,617
INFO 2026-06-08 09:25:34 OpticalDuplicateFinder Large duplicate set. size = 1191
INFO 2026-06-08 09:25:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,721
INFO 2026-06-08 09:25:34 OpticalDuplicateFinder Large duplicate set. size = 1156
INFO 2026-06-08 09:25:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,519
INFO 2026-06-08 09:25:34 OpticalDuplicateFinder Large duplicate set. size = 1050
INFO 2026-06-08 09:25:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,922
INFO 2026-06-08 09:25:34 OpticalDuplicateFinder Large duplicate set. size = 1092
INFO 2026-06-08 09:25:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,454
INFO 2026-06-08 09:25:34 OpticalDuplicateFinder Large duplicate set. size = 1218
INFO 2026-06-08 09:25:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,967
INFO 2026-06-08 09:25:34 OpticalDuplicateFinder Large duplicate set. size = 2133
INFO 2026-06-08 09:25:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,717
INFO 2026-06-08 09:25:34 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,119
INFO 2026-06-08 09:25:34 OpticalDuplicateFinder Large duplicate set. size = 1302
INFO 2026-06-08 09:25:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,758
INFO 2026-06-08 09:25:34 OpticalDuplicateFinder Large duplicate set. size = 1363
INFO 2026-06-08 09:25:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,182
INFO 2026-06-08 09:25:34 OpticalDuplicateFinder Large duplicate set. size = 1602
INFO 2026-06-08 09:25:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,632
INFO 2026-06-08 09:25:34 OpticalDuplicateFinder Large duplicate set. size = 1123
INFO 2026-06-08 09:25:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,103
INFO 2026-06-08 09:25:34 OpticalDuplicateFinder Large duplicate set. size = 1226
INFO 2026-06-08 09:25:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,200
INFO 2026-06-08 09:25:52 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:25:52 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:26:43 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:26:53 MarkDuplicates After generateDuplicateIndexes freeMemory: 203940984; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:26:53 MarkDuplicates Marking 453304229 records as duplicates.
INFO 2026-06-08 09:26:53 MarkDuplicates Found 14181389 optical duplicate clusters.
INFO 2026-06-08 09:26:53 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:27:09 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:15s. Time for last 10,000,000: 15s. Last read position: chr1:22,865,107
INFO 2026-06-08 09:27:25 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:31s. Time for last 10,000,000: 15s. Last read position: chr1:47,765,850
INFO 2026-06-08 09:27:40 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:46s. Time for last 10,000,000: 15s. Last read position: chr1:149,851,155
INFO 2026-06-08 09:27:55 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:01s. Time for last 10,000,000: 15s. Last read position: chr1:169,111,403
INFO 2026-06-08 09:28:11 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:17s. Time for last 10,000,000: 15s. Last read position: chr1:234,608,682
INFO 2026-06-08 09:28:29 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:35s. Time for last 10,000,000: 18s. Last read position: chr2:46,375,719
INFO 2026-06-08 09:28:44 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:51s. Time for last 10,000,000: 15s. Last read position: chr2:109,831,350
INFO 2026-06-08 09:29:00 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:06s. Time for last 10,000,000: 15s. Last read position: chr2:201,160,851
INFO 2026-06-08 09:29:15 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:22s. Time for last 10,000,000: 15s. Last read position: chr2:231,455,573
INFO 2026-06-08 09:29:31 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:37s. Time for last 10,000,000: 15s. Last read position: chr3:47,442,908
INFO 2026-06-08 09:29:47 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:53s. Time for last 10,000,000: 15s. Last read position: chr3:123,130,598
INFO 2026-06-08 09:30:02 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:08s. Time for last 10,000,000: 15s. Last read position: chr3:196,065,580
INFO 2026-06-08 09:30:18 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:24s. Time for last 10,000,000: 15s. Last read position: chr4:110,510,323
INFO 2026-06-08 09:30:34 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:40s. Time for last 10,000,000: 15s. Last read position: chr5:83,541,960
INFO 2026-06-08 09:30:50 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:56s. Time for last 10,000,000: 15s. Last read position: chr5:151,666,464
INFO 2026-06-08 09:31:05 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:12s. Time for last 10,000,000: 15s. Last read position: chr6:26,197,133
INFO 2026-06-08 09:31:21 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:27s. Time for last 10,000,000: 15s. Last read position: chr6:33,069,780
INFO 2026-06-08 09:31:37 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:43s. Time for last 10,000,000: 15s. Last read position: chr6:116,279,747
INFO 2026-06-08 09:31:52 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:04:58s. Time for last 10,000,000: 15s. Last read position: chr7:6,600,109
INFO 2026-06-08 09:32:07 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:13s. Time for last 10,000,000: 15s. Last read position: chr7:94,410,902
INFO 2026-06-08 09:32:23 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:29s. Time for last 10,000,000: 15s. Last read position: chr7:137,885,076
INFO 2026-06-08 09:32:38 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:44s. Time for last 10,000,000: 15s. Last read position: chr8:47,735,447
INFO 2026-06-08 09:32:54 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:00s. Time for last 10,000,000: 15s. Last read position: chr8:143,861,554
INFO 2026-06-08 09:33:10 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:16s. Time for last 10,000,000: 15s. Last read position: chr9:35,108,129
INFO 2026-06-08 09:33:25 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:31s. Time for last 10,000,000: 15s. Last read position: chr9:127,815,941
INFO 2026-06-08 09:33:41 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:47s. Time for last 10,000,000: 15s. Last read position: chr10:7,799,774
INFO 2026-06-08 09:33:57 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:03s. Time for last 10,000,000: 15s. Last read position: chr10:96,949,053
INFO 2026-06-08 09:34:12 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:19s. Time for last 10,000,000: 15s. Last read position: chr11:319,814
INFO 2026-06-08 09:34:28 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:34s. Time for last 10,000,000: 15s. Last read position: chr11:1,200,629
INFO 2026-06-08 09:34:44 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:50s. Time for last 10,000,000: 15s. Last read position: chr11:46,307,966
INFO 2026-06-08 09:34:59 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:05s. Time for last 10,000,000: 15s. Last read position: chr11:65,777,850
INFO 2026-06-08 09:35:15 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:21s. Time for last 10,000,000: 15s. Last read position: chr11:119,046,629
INFO 2026-06-08 09:35:31 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:37s. Time for last 10,000,000: 15s. Last read position: chr12:48,818,832
INFO 2026-06-08 09:35:52 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:08:58s. Time for last 10,000,000: 21s. Last read position: chr12:57,520,360
INFO 2026-06-08 09:36:11 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:17s. Time for last 10,000,000: 18s. Last read position: chr12:121,260,319
INFO 2026-06-08 09:36:26 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:32s. Time for last 10,000,000: 15s. Last read position: chr13:110,183,250
INFO 2026-06-08 09:36:42 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:48s. Time for last 10,000,000: 15s. Last read position: chr14:73,491,780
INFO 2026-06-08 09:36:58 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:04s. Time for last 10,000,000: 15s. Last read position: chr14:105,925,116
INFO 2026-06-08 09:37:14 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:20s. Time for last 10,000,000: 16s. Last read position: chr15:71,902,958
INFO 2026-06-08 09:37:30 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:36s. Time for last 10,000,000: 15s. Last read position: chr16:2,262,296
INFO 2026-06-08 09:37:47 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:53s. Time for last 10,000,000: 16s. Last read position: chr16:22,475,126
INFO 2026-06-08 09:38:02 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:09s. Time for last 10,000,000: 15s. Last read position: chr16:58,718,228
INFO 2026-06-08 09:38:18 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:24s. Time for last 10,000,000: 15s. Last read position: chr17:3,724,118
INFO 2026-06-08 09:38:33 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:39s. Time for last 10,000,000: 15s. Last read position: chr17:32,653,858
INFO 2026-06-08 09:38:48 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:11:54s. Time for last 10,000,000: 15s. Last read position: chr17:50,185,787
INFO 2026-06-08 09:39:04 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:10s. Time for last 10,000,000: 15s. Last read position: chr17:50,192,652
INFO 2026-06-08 09:39:19 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:25s. Time for last 10,000,000: 15s. Last read position: chr17:50,199,556
INFO 2026-06-08 09:39:35 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:41s. Time for last 10,000,000: 15s. Last read position: chr17:80,309,105
INFO 2026-06-08 09:39:50 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:12:57s. Time for last 10,000,000: 15s. Last read position: chr19:581,552
INFO 2026-06-08 09:40:06 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:12s. Time for last 10,000,000: 15s. Last read position: chr19:8,485,614
INFO 2026-06-08 09:40:21 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:27s. Time for last 10,000,000: 15s. Last read position: chr19:18,388,661
INFO 2026-06-08 09:40:36 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:42s. Time for last 10,000,000: 15s. Last read position: chr19:39,918,366
INFO 2026-06-08 09:40:55 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:01s. Time for last 10,000,000: 18s. Last read position: chr19:49,490,780
INFO 2026-06-08 09:41:10 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:16s. Time for last 10,000,000: 15s. Last read position: chr20:22,582,153
INFO 2026-06-08 09:41:25 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:31s. Time for last 10,000,000: 14s. Last read position: chr21:8,217,331
INFO 2026-06-08 09:41:39 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:14:46s. Time for last 10,000,000: 14s. Last read position: chr22:20,726,519
INFO 2026-06-08 09:41:54 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:00s. Time for last 10,000,000: 14s. Last read position: chr22:42,596,330
INFO 2026-06-08 09:42:13 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:19s. Time for last 10,000,000: 18s. Last read position: chrX:66,266,571
INFO 2026-06-08 09:42:31 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:37s. Time for last 10,000,000: 17s. Last read position: KI270733.1:177,488
INFO 2026-06-08 09:42:42 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:42:42 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:42:43 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:42:43 MarkDuplicates Before output close freeMemory: 203887168; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:42:43 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:42:43 MarkDuplicates After output close freeMemory: 104139200; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:42:43 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 39.43 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory