Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/a0a265d9838f4548dac301b460a15b/tih_rna_sample_00149_B23WHTKLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/a4a021e9d71ea5b84c76765222ddc2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/a4a021e9d71ea5b84c76765222ddc2/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory