File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/f7b04db74942fc10cf19d840ff72a5/.command.log
Size
3.2 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_bua-T1-TRNA-1_B23WHTKLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/8ab051a3b3055f35e3c1cee1376ec4/659_bua-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/423679e2937c46eee90e4a0b2072a8/659_bua-T1-TRNA-1_B23WHTKLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-99ebc9bd-f9f1-4b2c-b9a0-02ddaf99f257/75/8438968e551d03cb7cc7a0681df9ae/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/f7b04db74942fc10cf19d840ff72a5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/f7b04db74942fc10cf19d840ff72a5/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
TPM3--NTRK1
starfusion
arriba
RARS1--WWC1
starfusion
arriba
CRACD--THEGL
starfusion
arriba
TLK2--AC240565.1
starfusion
TLK2P1--AC110079.1
starfusion
AVL9--SEPTIN7
arriba
AVL9--RNU6-1085P
arriba
ERBIN--ARHGAP26
arriba
ADAMTS2--RARS1
arriba
TVP23C--CDRT4
arriba
WWC1--ADAMTS2
arriba

  0%|          | 0/11 [00:00<?, ?it/s]
Processing TPM3--NTRK1:   0%|          | 0/11 [00:00<?, ?it/s]
Processing TPM3--NTRK1:   9%|▉         | 1/11 [00:00<00:01,  9.26it/s]
Processing RARS1--WWC1:   9%|▉         | 1/11 [00:00<00:01,  9.26it/s]
Processing RARS1--WWC1:  18%|█▊        | 2/11 [00:00<00:00,  9.48it/s]
Processing CRACD--THEGL:  18%|█▊        | 2/11 [00:00<00:00,  9.48it/s]
Processing CRACD--THEGL:  27%|██▋       | 3/11 [00:00<00:00,  9.55it/s]
Processing TLK2--AC240565.1:  27%|██▋       | 3/11 [00:00<00:00,  9.55it/s]
Processing TLK2--AC240565.1:  36%|███▋      | 4/11 [00:00<00:00,  9.59it/s]
Processing TLK2P1--AC110079.1:  36%|███▋      | 4/11 [00:00<00:00,  9.59it/s]
Processing TLK2P1--AC110079.1:  45%|████▌     | 5/11 [00:00<00:00,  9.61it/s]
Processing AVL9--SEPTIN7:  45%|████▌     | 5/11 [00:00<00:00,  9.61it/s]     
Processing AVL9--SEPTIN7:  55%|█████▍    | 6/11 [00:00<00:00,  9.62it/s]
Processing AVL9--RNU6-1085P:  55%|█████▍    | 6/11 [00:00<00:00,  9.62it/s]
Processing AVL9--RNU6-1085P:  64%|██████▎   | 7/11 [00:00<00:00,  9.63it/s]
Processing ERBIN--ARHGAP26:  64%|██████▎   | 7/11 [00:00<00:00,  9.63it/s] 
Processing ERBIN--ARHGAP26:  73%|███████▎  | 8/11 [00:00<00:00,  9.64it/s]
Processing ADAMTS2--RARS1:  73%|███████▎  | 8/11 [00:00<00:00,  9.64it/s] 
Processing ADAMTS2--RARS1:  82%|████████▏ | 9/11 [00:00<00:00,  9.64it/s]
Processing TVP23C--CDRT4:  82%|████████▏ | 9/11 [00:00<00:00,  9.64it/s] 
Processing TVP23C--CDRT4:  91%|█████████ | 10/11 [00:01<00:00,  9.64it/s]
Processing WWC1--ADAMTS2:  91%|█████████ | 10/11 [00:01<00:00,  9.64it/s]
Processing WWC1--ADAMTS2: 100%|██████████| 11/11 [00:01<00:00,  9.64it/s]
Processing WWC1--ADAMTS2: 100%|██████████| 11/11 [00:01<00:00,  9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory