[W::hts_idx_load3] The index file is older than the data file: 659_cAd-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	313188545
Known Splicing Events:	309654580
Partial Novel Splicing Events:	1669756
Novel Splicing Events:	1697773
Filtered Splicing Events:	166436

Total splicing  Junctions:	361896
Known Splicing Junctions:	223250
Partial Novel Splicing Junctions:	72929
Novel Splicing Junctions:	65717

===================================================================
Create BED file ...
Create Interact file ...