Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/52cce1b835f32343b4865ee7f800b4/659_cAd-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/b02a7396bf6caf366aae276126d7b9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/531191fee1dff396c2acaab92f7761/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/c77ddf2c81470bb10a95d68e9cf33d/659_cAd-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/531191fee1dff396c2acaab92f7761/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 313188545
[W::hts_idx_load3] The index file is older than the data file: 659_cAd-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	313188545
Known Splicing Events:	309654580
Partial Novel Splicing Events:	1669756
Novel Splicing Events:	1697773
Filtered Splicing Events:	166436

Total splicing  Junctions:	361896
Known Splicing Junctions:	223250
Partial Novel Splicing Junctions:	72929
Novel Splicing Junctions:	65717

===================================================================
Create BED file ...
Create Interact file ...