[W::hts_idx_load3] The index file is older than the data file: 659_cTi-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	354618628
Known Splicing Events:	349480876
Partial Novel Splicing Events:	1652271
Novel Splicing Events:	3333076
Filtered Splicing Events:	152405

Total splicing  Junctions:	468170
Known Splicing Junctions:	253210
Partial Novel Splicing Junctions:	108230
Novel Splicing Junctions:	106730

===================================================================
Create BED file ...
Create Interact file ...