Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/e85caf98ee23a09a0c80d541fe28ad/659_cTi-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/b02a7396bf6caf366aae276126d7b9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/80081734931f60900a80eb811544f9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/80081734931f60900a80eb811544f9/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/446451d3d89ff3671a2d60ed9f0977/659_cTi-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 354618628
[W::hts_idx_load3] The index file is older than the data file: 659_cTi-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	354618628
Known Splicing Events:	349480876
Partial Novel Splicing Events:	1652271
Novel Splicing Events:	3333076
Filtered Splicing Events:	152405

Total splicing  Junctions:	468170
Known Splicing Junctions:	253210
Partial Novel Splicing Junctions:	108230
Novel Splicing Junctions:	106730

===================================================================
Create BED file ...
Create Interact file ...