File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/153cd543bc0f4a0d56998e89f18ae3/.command.log
Size
3.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_ciJ-T1-TRNA-1_B23WHTKLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/46b250c26b547c1919896df4dfa372/659_ciJ-T1-TRNA-1_B23WHTKLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-99ebc9bd-f9f1-4b2c-b9a0-02ddaf99f257/75/8438968e551d03cb7cc7a0681df9ae/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/153cd543bc0f4a0d56998e89f18ae3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/153cd543bc0f4a0d56998e89f18ae3/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/b3cc775ff05acbea39c60440b1cf91/659_ciJ-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
CCDC6--RET
starfusion
arriba
RAI1--MYO15A
starfusion
TLK2--AC240565.1
starfusion
TLK2P1--AC110079.1
starfusion
EIF2S3--KLHL15
arriba
STX16--NPEPL1
arriba
EIF3H--SLC30A8
arriba
STOM--AL359644.1
arriba
TVP23C--CDRT4
arriba
MIPEP--CYCSP33
arriba
MIPEP--TPTE2P6
arriba
VPS8--AC099560.1
arriba
DNAJC1--SPAG6
arriba
DNAJC1--AL513128.1
arriba

  0%|          | 0/14 [00:00<?, ?it/s]
Processing CCDC6--RET:   0%|          | 0/14 [00:00<?, ?it/s]
Processing CCDC6--RET:   7%|▋         | 1/14 [00:00<00:01,  9.22it/s]
Processing RAI1--MYO15A:   7%|▋         | 1/14 [00:00<00:01,  9.22it/s]
Processing RAI1--MYO15A:  14%|█▍        | 2/14 [00:00<00:01,  9.45it/s]
Processing TLK2--AC240565.1:  14%|█▍        | 2/14 [00:00<00:01,  9.45it/s]
Processing TLK2--AC240565.1:  21%|██▏       | 3/14 [00:00<00:01,  9.53it/s]
Processing TLK2P1--AC110079.1:  21%|██▏       | 3/14 [00:00<00:01,  9.53it/s]
Processing TLK2P1--AC110079.1:  29%|██▊       | 4/14 [00:00<00:01,  9.57it/s]
Processing EIF2S3--KLHL15:  29%|██▊       | 4/14 [00:00<00:01,  9.57it/s]    
Processing EIF2S3--KLHL15:  36%|███▌      | 5/14 [00:00<00:00,  9.59it/s]
Processing STX16--NPEPL1:  36%|███▌      | 5/14 [00:00<00:00,  9.59it/s] 
Processing STX16--NPEPL1:  43%|████▎     | 6/14 [00:00<00:00,  9.60it/s]
Processing EIF3H--SLC30A8:  43%|████▎     | 6/14 [00:00<00:00,  9.60it/s]
Processing EIF3H--SLC30A8:  50%|█████     | 7/14 [00:00<00:00,  9.61it/s]
Processing STOM--AL359644.1:  50%|█████     | 7/14 [00:00<00:00,  9.61it/s]
Processing STOM--AL359644.1:  57%|█████▋    | 8/14 [00:00<00:00,  9.61it/s]
Processing TVP23C--CDRT4:  57%|█████▋    | 8/14 [00:00<00:00,  9.61it/s]   
Processing TVP23C--CDRT4:  64%|██████▍   | 9/14 [00:00<00:00,  9.60it/s]
Processing MIPEP--CYCSP33:  64%|██████▍   | 9/14 [00:00<00:00,  9.60it/s]
Processing MIPEP--CYCSP33:  71%|███████▏  | 10/14 [00:01<00:00,  9.61it/s]
Processing MIPEP--TPTE2P6:  71%|███████▏  | 10/14 [00:01<00:00,  9.61it/s]
Processing MIPEP--TPTE2P6:  79%|███████▊  | 11/14 [00:01<00:00,  9.61it/s]
Processing VPS8--AC099560.1:  79%|███████▊  | 11/14 [00:01<00:00,  9.61it/s]
Processing VPS8--AC099560.1:  86%|████████▌ | 12/14 [00:01<00:00,  9.61it/s]
Processing DNAJC1--SPAG6:  86%|████████▌ | 12/14 [00:01<00:00,  9.61it/s]   
Processing DNAJC1--SPAG6:  93%|█████████▎| 13/14 [00:01<00:00,  9.61it/s]
Processing DNAJC1--AL513128.1:  93%|█████████▎| 13/14 [00:01<00:00,  9.61it/s]
Processing DNAJC1--AL513128.1: 100%|██████████| 14/14 [00:01<00:00,  9.61it/s]
Processing DNAJC1--AL513128.1: 100%|██████████| 14/14 [00:01<00:00,  9.59it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory