Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/af4241608f2e74cb6f18d1f5094f36/tih_rna_sample_00136_B23WHTKLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/3ea83aadfcbb9e02bea1e8a31d30c4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/3ea83aadfcbb9e02bea1e8a31d30c4/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory