Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/bd42a2b51e07ac133635abf3cac8cf/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/7f73cb55b4018deebff4ec9380c748/tih_rna_sample_00461_B23WHTKLT4_2.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/bd42a2b51e07ac133635abf3cac8cf/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory