Done.
-parsing GTF file: /tmp/nxf.XczuaQ8A6Z/tih_rna_sample_00457_B23WHTKLT4_2.gtf
* Running CMD: /usr/local/bin/STAR  --runThreadN 8  --genomeDir /tmp/nxf.XczuaQ8A6Z/ctat_genome_lib_build_dir/ref_genome.fa.star.idx  --outSAMtype BAM SortedByCoordinate  --twopassMode None  --alignSJDBoverhangMin 10  --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705  --alignInsertionFlush Right   --alignMatesGapMax 100000  --alignIntronMax 100000  --outSAMattributes All  --readFilesIn /tmp/nxf.XczuaQ8A6Z/tih_rna_sample_00457_B23WHTKLT4_2_1.fastp.fastq.gz /tmp/nxf.XczuaQ8A6Z/tih_rna_sample_00457_B23WHTKLT4_2_2.fastp.fastq.gz  --genomeFastaFiles /tmp/nxf.XczuaQ8A6Z/fi_workdir/tih_rna_sample_00457_B23WHTKLT4_2.fa  --outSAMfilter KeepAllAddedReferences  --sjdbGTFfile /tmp/nxf.XczuaQ8A6Z/fi_workdir/tih_rna_sample_00457_B23WHTKLT4_2.gtf  --alignSJstitchMismatchNmax 5 -1 5 5  --scoreGapNoncan -6  --readFilesCommand 'gunzip -c' 
* Running CMD: mv Aligned.sortedByCoord.out.bam tih_rna_sample_00457_B23WHTKLT4_2.star.sortedByCoord.out.bam
* Running CMD: samtools index tih_rna_sample_00457_B23WHTKLT4_2.star.sortedByCoord.out.bam
11:14:29 : INFO : Done.
-parsing GTF file: /tmp/nxf.XczuaQ8A6Z/fi_workdir/tih_rna_sample_00457_B23WHTKLT4_2.gtf
-parsing /tmp/nxf.XczuaQ8A6Z/fi_workdir/tih_rna_sample_00457_B23WHTKLT4_2.star.cSorted.dupsMarked.bam

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[840000]   -done parsing /tmp/nxf.XczuaQ8A6Z/fi_workdir/tih_rna_sample_00457_B23WHTKLT4_2.star.cSorted.dupsMarked.bam.  Extracting junction info.
junction read elimination tally: $VAR1 = {
          'low complexity anchor region' => 2,
          'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 8,
          'excessive soft clipping' => 6430,
          'num_hits: 7 != num_counted_on_fusion_contigs 5 ' => 5,
          'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 34,
          'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 88,
          'per_id < 96' => 3517,
          'num_hits: 9 != num_counted_on_fusion_contigs 3 ' => 6,
          'num genes matched < 2' => 36,
          'seq-similar region overlap' => 197,
          'num_hits: 4 != num_counted_on_fusion_contigs 1 ' => 2,
          ' ** passed ** ' => 20700,
          'num_hits: 6 != num_counted_on_fusion_contigs 3 ' => 3,
          'small anchor length' => 72,
          'num_hits: 7 != num_counted_on_fusion_contigs 3 ' => 3
        };
-writing fusion junction support info.
-outputting the spanning read info: /tmp/nxf.XczuaQ8A6Z/fi_workdir/tih_rna_sample_00457_B23WHTKLT4_2.star.cSorted.dupsMarked.bam.fusion_spanning_info.
 - counting read alignments among fusion contigs.

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[16000]   -fusion SPANNING read extraction for scaff: AC092807.3--DDAH1

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[63000]   
[64000]   
[65000]   -fusion SPANNING read extraction for scaff: CSNK1D--AC131274.3

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[65000]   -fusion SPANNING read extraction for scaff: CSNK1D--AC069061.1

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[35000]   -fusion SPANNING read extraction for scaff: JPT1--C17orf58

[1000]   
[2000]   -fusion SPANNING read extraction for scaff: KLRC4--KLRK1

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[113000]   
[114000]   -fusion SPANNING read extraction for scaff: MAP3K3--MED13

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[9000]   
[10000]   -fusion SPANNING read extraction for scaff: PCDHA10--PCDHAC1

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[9000]   -fusion SPANNING read extraction for scaff: PCDHA10--PCDHAC2

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[10000]   -fusion SPANNING read extraction for scaff: PCDHA10--PCDHA13

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[12000]   -fusion SPANNING read extraction for scaff: PCDHA11--PCDHAC1

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[11000]   -fusion SPANNING read extraction for scaff: PCDHA11--PCDHAC2

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[12000]   -fusion SPANNING read extraction for scaff: PCDHA11--PCDHA13

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[8000]   -fusion SPANNING read extraction for scaff: PCDHA3--PCDHAC1

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[8000]   -fusion SPANNING read extraction for scaff: PCDHA3--PCDHAC2

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[8000]   -fusion SPANNING read extraction for scaff: PCDHA3--PCDHA13

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[16000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA8

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[12000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA10

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[96000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC3

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[9000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC4

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[9000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC5

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[12000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB6

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[12000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA11

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[13000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB7

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[16000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA12

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[18000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA9

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[120000]   -fusion SPANNING read extraction for scaff: PSMD12--BPTF

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[19000]   -fusion SPANNING read extraction for scaff: SOCS7--DBF4B

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[27000]   -fusion SPANNING read extraction for scaff: SOCS7--ADAM11

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[48000]   -fusion SPANNING read extraction for scaff: STX16--NPEPL1

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[4000]   -fusion SPANNING read extraction for scaff: TLK2P1--AC110079.1

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[13000]   -fusion SPANNING read extraction for scaff: TVP23C--CDRT4
-filtered reads reasons: $VAR1 = {
          'lacks exon overlap' => 2666,
          'seq similar region alignment' => 30320
        };
EM: Starting log likelihood: -2806.599855
EM: Round [1] log likelihood: -2804.464920
EM: Round [2] log likelihood: -2804.066596
EM: Round [3] log likelihood: -2803.764019
EM: Round [4] log likelihood: -2803.508392
EM: Round [5] log likelihood: -2803.286661
EM: Round [6] log likelihood: -2803.092627
EM: Round [7] log likelihood: -2802.921978
EM: Round [8] log likelihood: -2802.771294
EM: Round [9] log likelihood: -2802.637762
EM: Round [10] log likelihood: -2802.519030
EM: Round [11] log likelihood: -2802.413124
EM: Round [12] log likelihood: -2802.318366
EM: Round [13] log likelihood: -2802.233329
EM: Round [14] log likelihood: -2802.156791
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EM: Round [947] log likelihood: -2799.310851
EM: Round [948] log likelihood: -2799.310377
EM: Round [949] log likelihood: -2799.309904
EM: Round [950] log likelihood: -2799.309432
EM: Round [951] log likelihood: -2799.308961
EM: Round [952] log likelihood: -2799.308491
EM: Round [953] log likelihood: -2799.308022
EM: Round [954] log likelihood: -2799.307554
EM: Round [955] log likelihood: -2799.307087
EM: Round [956] log likelihood: -2799.306621
EM: Round [957] log likelihood: -2799.306156
EM: Round [958] log likelihood: -2799.305692
EM: Round [959] log likelihood: -2799.305230
EM: Round [960] log likelihood: -2799.304768
EM: Round [961] log likelihood: -2799.304307
EM: Round [962] log likelihood: -2799.303847
EM: Round [963] log likelihood: -2799.303389
EM: Round [964] log likelihood: -2799.302931
EM: Round [965] log likelihood: -2799.302474
EM: Round [966] log likelihood: -2799.302019
EM: Round [967] log likelihood: -2799.301564
EM: Round [968] log likelihood: -2799.301111
EM: Round [969] log likelihood: -2799.300658
EM: Round [970] log likelihood: -2799.300206
EM: Round [971] log likelihood: -2799.299756
EM: Round [972] log likelihood: -2799.299306
EM: Round [973] log likelihood: -2799.298857
EM: Round [974] log likelihood: -2799.298410
EM: Round [975] log likelihood: -2799.297963
EM: Round [976] log likelihood: -2799.297518
EM: Round [977] log likelihood: -2799.297073
EM: Round [978] log likelihood: -2799.296629
EM: Round [979] log likelihood: -2799.296187
EM: Round [980] log likelihood: -2799.295745
EM: Round [981] log likelihood: -2799.295304
EM: Round [982] log likelihood: -2799.294864
EM: Round [983] log likelihood: -2799.294426
EM: Round [984] log likelihood: -2799.293988
EM: Round [985] log likelihood: -2799.293551
EM: Round [986] log likelihood: -2799.293115
EM: Round [987] log likelihood: -2799.292680
EM: Round [988] log likelihood: -2799.292246
EM: Round [989] log likelihood: -2799.291813
EM: Round [990] log likelihood: -2799.291381
EM: Round [991] log likelihood: -2799.290950
EM: Round [992] log likelihood: -2799.290520
EM: Round [993] log likelihood: -2799.290090
EM: Round [994] log likelihood: -2799.289662
EM: Round [995] log likelihood: -2799.289235
EM: Round [996] log likelihood: -2799.288809
EM: Round [997] log likelihood: -2799.288383
EM: Round [998] log likelihood: -2799.287959
EM: Round [999] log likelihood: -2799.287535
EM: Round [1000] log likelihood: -2799.287112
EM: Round [1001] log likelihood: -2799.286691
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
-extracting read coordinates from /tmp/nxf.XczuaQ8A6Z/tih_rna_sample_00457_B23WHTKLT4_2.consolidated.bam into /tmp/nxf.XczuaQ8A6Z/tih_rna_sample_00457_B23WHTKLT4_2.consolidated.bam.read_coords

CMD: touch /tmp/nxf.XczuaQ8A6Z/tih_rna_sample_00457_B23WHTKLT4_2.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.XczuaQ8A6Z/tih_rna_sample_00457_B23WHTKLT4_2.consolidated.bam.read_coords > /tmp/nxf.XczuaQ8A6Z/tih_rna_sample_00457_B23WHTKLT4_2.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.XczuaQ8A6Z/tih_rna_sample_00457_B23WHTKLT4_2.consolidated.bam.frag_coords > /tmp/nxf.XczuaQ8A6Z/tih_rna_sample_00457_B23WHTKLT4_2.consolidated.bam.frag_coords.coord_sorted
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.XczuaQ8A6Z/fi_workdir/tih_rna_sample_00457_B23WHTKLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.XczuaQ8A6Z/fi_workdir/tih_rna_sample_00457_B23WHTKLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter  --genome_lib_dir ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 50 
CMD: cp /tmp/nxf.XczuaQ8A6Z/fi_workdir/tih_rna_sample_00457_B23WHTKLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.XczuaQ8A6Z/tih_rna_sample_00457_B23WHTKLT4_2.post_blast_and_promiscuity_filter
-done, see /tmp/nxf.XczuaQ8A6Z/tih_rna_sample_00457_B23WHTKLT4_2.post_blast_and_promiscuity_filter.annot_filter.pass
EM: Starting log likelihood: -2127.403630
EM: Round [1] log likelihood: -2127.363613
EM: Round [2] log likelihood: -2127.351920
EM: Round [3] log likelihood: -2127.340326
EM: Round [4] log likelihood: -2127.328823
EM: Round [5] log likelihood: -2127.317408
EM: Round [6] log likelihood: -2127.306080
EM: Round [7] log likelihood: -2127.294838
EM: Round [8] log likelihood: -2127.283681
EM: Round [9] log likelihood: -2127.272608
EM: Round [10] log likelihood: -2127.261618
EM: Round [11] log likelihood: -2127.250709
EM: Round [12] log likelihood: -2127.239881
EM: Round [13] log likelihood: -2127.229133
EM: Round [14] log likelihood: -2127.218463
EM: Round [15] log likelihood: -2127.207871
EM: Round [16] log likelihood: -2127.197356
EM: Round [17] log likelihood: -2127.186916
EM: Round [18] log likelihood: -2127.176551
EM: Round [19] log likelihood: -2127.166260
EM: Round [20] log likelihood: -2127.156042
EM: Round [21] log likelihood: -2127.145896
EM: Round [22] log likelihood: -2127.135821
EM: Round [23] log likelihood: -2127.125816
EM: Round [24] log likelihood: -2127.115881
EM: Round [25] log likelihood: -2127.106015
EM: Round [26] log likelihood: -2127.096216
EM: Round [27] log likelihood: -2127.086485
EM: Round [28] log likelihood: -2127.076820
EM: Round [29] log likelihood: -2127.067220
EM: Round [30] log likelihood: -2127.057685
EM: Round [31] log likelihood: -2127.048214
EM: Round [32] log likelihood: -2127.038807
EM: Round [33] log likelihood: -2127.029462
EM: Round [34] log likelihood: -2127.020179
EM: Round [35] log likelihood: -2127.010957
EM: Round [36] log likelihood: -2127.001796
EM: Round [37] log likelihood: -2126.992694
EM: Round [38] log likelihood: -2126.983651
EM: Round [39] log likelihood: -2126.974668
EM: Round [40] log likelihood: -2126.965742
EM: Round [41] log likelihood: -2126.956873
EM: Round [42] log likelihood: -2126.948061
EM: Round [43] log likelihood: -2126.939305
EM: Round [44] log likelihood: -2126.930604
EM: Round [45] log likelihood: -2126.921958
EM: Round [46] log likelihood: -2126.913366
EM: Round [47] log likelihood: -2126.904829
EM: Round [48] log likelihood: -2126.896344
EM: Round [49] log likelihood: -2126.887912
EM: Round [50] log likelihood: -2126.879531
EM: Round [51] log likelihood: -2126.871203
EM: Round [52] log likelihood: -2126.862925
EM: Round [53] log likelihood: -2126.854698
EM: Round [54] log likelihood: -2126.846520
EM: Round [55] log likelihood: -2126.838392
EM: Round [56] log likelihood: -2126.830313
EM: Round [57] log likelihood: -2126.822283
EM: Round [58] log likelihood: -2126.814300
EM: Round [59] log likelihood: -2126.806365
EM: Round [60] log likelihood: -2126.798477
EM: Round [61] log likelihood: -2126.790635
EM: Round [62] log likelihood: -2126.782840
EM: Round [63] log likelihood: -2126.775090
EM: Round [64] log likelihood: -2126.767385
EM: Round [65] log likelihood: -2126.759726
EM: Round [66] log likelihood: -2126.752110
EM: Round [67] log likelihood: -2126.744538
EM: Round [68] log likelihood: -2126.737010
EM: Round [69] log likelihood: -2126.729525
EM: Round [70] log likelihood: -2126.722083
EM: Round [71] log likelihood: -2126.714683
EM: Round [72] log likelihood: -2126.707325
EM: Round [73] log likelihood: -2126.700008
EM: Round [74] log likelihood: -2126.692732
EM: Round [75] log likelihood: -2126.685497
EM: Round [76] log likelihood: -2126.678303
EM: Round [77] log likelihood: -2126.671148
EM: Round [78] log likelihood: -2126.664033
EM: Round [79] log likelihood: -2126.656958
EM: Round [80] log likelihood: -2126.649921
EM: Round [81] log likelihood: -2126.642923
EM: Round [82] log likelihood: -2126.635963
EM: Round [83] log likelihood: -2126.629041
EM: Round [84] log likelihood: -2126.622156
EM: Round [85] log likelihood: -2126.615309
EM: Round [86] log likelihood: -2126.608498
EM: Round [87] log likelihood: -2126.601725
EM: Round [88] log likelihood: -2126.594987
EM: Round [89] log likelihood: -2126.588285
EM: Round [90] log likelihood: -2126.581619
EM: Round [91] log likelihood: -2126.574988
EM: Round [92] log likelihood: -2126.568392
EM: Round [93] log likelihood: -2126.561831
EM: Round [94] log likelihood: -2126.555304
EM: Round [95] log likelihood: -2126.548812
EM: Round [96] log likelihood: -2126.542353
EM: Round [97] log likelihood: -2126.535928
EM: Round [98] log likelihood: -2126.529536
EM: Round [99] log likelihood: -2126.523177
EM: Round [100] log likelihood: -2126.516851
EM: Round [101] log likelihood: -2126.510557
EM: Round [102] log likelihood: -2126.504295
EM: Round [103] log likelihood: -2126.498065
EM: Round [104] log likelihood: -2126.491867
EM: Round [105] log likelihood: -2126.485701
EM: Round [106] log likelihood: -2126.479565
EM: Round [107] log likelihood: -2126.473460
EM: Round [108] log likelihood: -2126.467386
EM: Round [109] log likelihood: -2126.461343
EM: Round [110] log likelihood: -2126.455329
EM: Round [111] log likelihood: -2126.449345
EM: Round [112] log likelihood: -2126.443392
EM: Round [113] log likelihood: -2126.437467
EM: Round [114] log likelihood: -2126.431572
EM: Round [115] log likelihood: -2126.425705
EM: Round [116] log likelihood: -2126.419868
EM: Round [117] log likelihood: -2126.414059
EM: Round [118] log likelihood: -2126.408278
EM: Round [119] log likelihood: -2126.402525
EM: Round [120] log likelihood: -2126.396800
EM: Round [121] log likelihood: -2126.391103
EM: Round [122] log likelihood: -2126.385433
EM: Round [123] log likelihood: -2126.379791
EM: Round [124] log likelihood: -2126.374175
EM: Round [125] log likelihood: -2126.368587
EM: Round [126] log likelihood: -2126.363025
EM: Round [127] log likelihood: -2126.357489
EM: Round [128] log likelihood: -2126.351980
EM: Round [129] log likelihood: -2126.346496
EM: Round [130] log likelihood: -2126.341039
EM: Round [131] log likelihood: -2126.335607
EM: Round [132] log likelihood: -2126.330200
EM: Round [133] log likelihood: -2126.324819
EM: Round [134] log likelihood: -2126.319463
EM: Round [135] log likelihood: -2126.314132
EM: Round [136] log likelihood: -2126.308825
EM: Round [137] log likelihood: -2126.303543
EM: Round [138] log likelihood: -2126.298285
EM: Round [139] log likelihood: -2126.293052
EM: Round [140] log likelihood: -2126.287842
EM: Round [141] log likelihood: -2126.282657
EM: Round [142] log likelihood: -2126.277495
EM: Round [143] log likelihood: -2126.272356
EM: Round [144] log likelihood: -2126.267241
EM: Round [145] log likelihood: -2126.262149
EM: Round [146] log likelihood: -2126.257080
EM: Round [147] log likelihood: -2126.252034
EM: Round [148] log likelihood: -2126.247010
EM: Round [149] log likelihood: -2126.242009
EM: Round [150] log likelihood: -2126.237030
EM: Round [151] log likelihood: -2126.232074
EM: Round [152] log likelihood: -2126.227140
EM: Round [153] log likelihood: -2126.222227
EM: Round [154] log likelihood: -2126.217336
EM: Round [155] log likelihood: -2126.212467
EM: Round [156] log likelihood: -2126.207620
EM: Round [157] log likelihood: -2126.202793
EM: Round [158] log likelihood: -2126.197988
EM: Round [159] log likelihood: -2126.193204
EM: Round [160] log likelihood: -2126.188440
EM: Round [161] log likelihood: -2126.183698
EM: Round [162] log likelihood: -2126.178976
EM: Round [163] log likelihood: -2126.174274
EM: Round [164] log likelihood: -2126.169593
EM: Round [165] log likelihood: -2126.164932
EM: Round [166] log likelihood: -2126.160291
EM: Round [167] log likelihood: -2126.155670
EM: Round [168] log likelihood: -2126.151069
EM: Round [169] log likelihood: -2126.146487
EM: Round [170] log likelihood: -2126.141925
EM: Round [171] log likelihood: -2126.137382
EM: Round [172] log likelihood: -2126.132859
EM: Round [173] log likelihood: -2126.128355
EM: Round [174] log likelihood: -2126.123869
EM: Round [175] log likelihood: -2126.119403
EM: Round [176] log likelihood: -2126.114955
EM: Round [177] log likelihood: -2126.110527
EM: Round [178] log likelihood: -2126.106116
EM: Round [179] log likelihood: -2126.101724
EM: Round [180] log likelihood: -2126.097351
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EM: Round [182] log likelihood: -2126.088658
EM: Round [183] log likelihood: -2126.084339
EM: Round [184] log likelihood: -2126.080037
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EM: Round [187] log likelihood: -2126.067239
EM: Round [188] log likelihood: -2126.063007
EM: Round [189] log likelihood: -2126.058794
EM: Round [190] log likelihood: -2126.054597
EM: Round [191] log likelihood: -2126.050417
EM: Round [192] log likelihood: -2126.046255
EM: Round [193] log likelihood: -2126.042109
EM: Round [194] log likelihood: -2126.037980
EM: Round [195] log likelihood: -2126.033867
EM: Round [196] log likelihood: -2126.029772
EM: Round [197] log likelihood: -2126.025692
EM: Round [198] log likelihood: -2126.021630
EM: Round [199] log likelihood: -2126.017583
EM: Round [200] log likelihood: -2126.013552
EM: Round [201] log likelihood: -2126.009538
EM: Round [202] log likelihood: -2126.005540
EM: Round [203] log likelihood: -2126.001557
EM: Round [204] log likelihood: -2125.997590
EM: Round [205] log likelihood: -2125.993639
EM: Round [206] log likelihood: -2125.989704
EM: Round [207] log likelihood: -2125.985784
EM: Round [208] log likelihood: -2125.981880
EM: Round [209] log likelihood: -2125.977991
EM: Round [210] log likelihood: -2125.974117
EM: Round [211] log likelihood: -2125.970258
EM: Round [212] log likelihood: -2125.966414
EM: Round [213] log likelihood: -2125.962586
EM: Round [214] log likelihood: -2125.958772
EM: Round [215] log likelihood: -2125.954973
EM: Round [216] log likelihood: -2125.951188
EM: Round [217] log likelihood: -2125.947419
EM: Round [218] log likelihood: -2125.943664
EM: Round [219] log likelihood: -2125.939923
EM: Round [220] log likelihood: -2125.936197
EM: Round [221] log likelihood: -2125.932485
EM: Round [222] log likelihood: -2125.928787
EM: Round [223] log likelihood: -2125.925104
EM: Round [224] log likelihood: -2125.921434
EM: Round [225] log likelihood: -2125.917779
EM: Round [226] log likelihood: -2125.914137
EM: Round [227] log likelihood: -2125.910509
EM: Round [228] log likelihood: -2125.906895
EM: Round [229] log likelihood: -2125.903295
EM: Round [230] log likelihood: -2125.899708
EM: Round [231] log likelihood: -2125.896135
EM: Round [232] log likelihood: -2125.892575
EM: Round [233] log likelihood: -2125.889028
EM: Round [234] log likelihood: -2125.885495
EM: Round [235] log likelihood: -2125.881975
EM: Round [236] log likelihood: -2125.878468
EM: Round [237] log likelihood: -2125.874975
EM: Round [238] log likelihood: -2125.871494
EM: Round [239] log likelihood: -2125.868026
EM: Round [240] log likelihood: -2125.864571
EM: Round [241] log likelihood: -2125.861129
EM: Round [242] log likelihood: -2125.857700
EM: Round [243] log likelihood: -2125.854283
EM: Round [244] log likelihood: -2125.850879
EM: Round [245] log likelihood: -2125.847487
EM: Round [246] log likelihood: -2125.844108
EM: Round [247] log likelihood: -2125.840741
EM: Round [248] log likelihood: -2125.837387
EM: Round [249] log likelihood: -2125.834044
EM: Round [250] log likelihood: -2125.830714
EM: Round [251] log likelihood: -2125.827396
EM: Round [252] log likelihood: -2125.824091
EM: Round [253] log likelihood: -2125.820797
EM: Round [254] log likelihood: -2125.817515
EM: Round [255] log likelihood: -2125.814245
EM: Round [256] log likelihood: -2125.810987
EM: Round [257] log likelihood: -2125.807740
EM: Round [258] log likelihood: -2125.804505
EM: Round [259] log likelihood: -2125.801282
EM: Round [260] log likelihood: -2125.798071
EM: Round [261] log likelihood: -2125.794871
EM: Round [262] log likelihood: -2125.791682
EM: Round [263] log likelihood: -2125.788505
EM: Round [264] log likelihood: -2125.785339
EM: Round [265] log likelihood: -2125.782184
EM: Round [266] log likelihood: -2125.779041
EM: Round [267] log likelihood: -2125.775908
EM: Round [268] log likelihood: -2125.772787
EM: Round [269] log likelihood: -2125.769677
EM: Round [270] log likelihood: -2125.766578
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EM: Round [297] log likelihood: -2125.686859
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EM: Round [299] log likelihood: -2125.681243
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EM: Round [817] log likelihood: -2124.934385
EM: Round [818] log likelihood: -2124.933697
EM: Round [819] log likelihood: -2124.933011
EM: Round [820] log likelihood: -2124.932326
EM: Round [821] log likelihood: -2124.931643
EM: Round [822] log likelihood: -2124.930962
EM: Round [823] log likelihood: -2124.930282
EM: Round [824] log likelihood: -2124.929604
EM: Round [825] log likelihood: -2124.928927
EM: Round [826] log likelihood: -2124.928252
EM: Round [827] log likelihood: -2124.927578
EM: Round [828] log likelihood: -2124.926906
EM: Round [829] log likelihood: -2124.926236
EM: Round [830] log likelihood: -2124.925567
EM: Round [831] log likelihood: -2124.924900
EM: Round [832] log likelihood: -2124.924234
EM: Round [833] log likelihood: -2124.923570
EM: Round [834] log likelihood: -2124.922907
EM: Round [835] log likelihood: -2124.922246
EM: Round [836] log likelihood: -2124.921586
EM: Round [837] log likelihood: -2124.920928
EM: Round [838] log likelihood: -2124.920272
EM: Round [839] log likelihood: -2124.919617
EM: Round [840] log likelihood: -2124.918963
EM: Round [841] log likelihood: -2124.918311
EM: Round [842] log likelihood: -2124.917661
EM: Round [843] log likelihood: -2124.917012
EM: Round [844] log likelihood: -2124.916364
EM: Round [845] log likelihood: -2124.915718
EM: Round [846] log likelihood: -2124.915074
EM: Round [847] log likelihood: -2124.914431
EM: Round [848] log likelihood: -2124.913789
EM: Round [849] log likelihood: -2124.913149
EM: Round [850] log likelihood: -2124.912510
EM: Round [851] log likelihood: -2124.911873
EM: Round [852] log likelihood: -2124.911237
EM: Round [853] log likelihood: -2124.910603
EM: Round [854] log likelihood: -2124.909970
EM: Round [855] log likelihood: -2124.909339
EM: Round [856] log likelihood: -2124.908709
EM: Round [857] log likelihood: -2124.908081
EM: Round [858] log likelihood: -2124.907454
EM: Round [859] log likelihood: -2124.906828
EM: Round [860] log likelihood: -2124.906204
EM: Round [861] log likelihood: -2124.905582
EM: Round [862] log likelihood: -2124.904960
EM: Round [863] log likelihood: -2124.904341
EM: Round [864] log likelihood: -2124.903722
EM: Round [865] log likelihood: -2124.903105
EM: Round [866] log likelihood: -2124.902490
EM: Round [867] log likelihood: -2124.901876
EM: Round [868] log likelihood: -2124.901263
EM: Round [869] log likelihood: -2124.900652
EM: Round [870] log likelihood: -2124.900042
EM: Round [871] log likelihood: -2124.899433
EM: Round [872] log likelihood: -2124.898826
EM: Round [873] log likelihood: -2124.898220
EM: Round [874] log likelihood: -2124.897616
EM: Round [875] log likelihood: -2124.897013
EM: Round [876] log likelihood: -2124.896411
EM: Round [877] log likelihood: -2124.895811
EM: Round [878] log likelihood: -2124.895212
EM: Round [879] log likelihood: -2124.894615
EM: Round [880] log likelihood: -2124.894019
EM: Round [881] log likelihood: -2124.893424
EM: Round [882] log likelihood: -2124.892830
EM: Round [883] log likelihood: -2124.892238
EM: Round [884] log likelihood: -2124.891648
EM: Round [885] log likelihood: -2124.891058
EM: Round [886] log likelihood: -2124.890470
EM: Round [887] log likelihood: -2124.889884
EM: Round [888] log likelihood: -2124.889298
EM: Round [889] log likelihood: -2124.888714
EM: Round [890] log likelihood: -2124.888132
EM: Round [891] log likelihood: -2124.887550
EM: Round [892] log likelihood: -2124.886970
EM: Round [893] log likelihood: -2124.886391
EM: Round [894] log likelihood: -2124.885814
EM: Round [895] log likelihood: -2124.885238
EM: Round [896] log likelihood: -2124.884663
EM: Round [897] log likelihood: -2124.884090
EM: Round [898] log likelihood: -2124.883517
EM: Round [899] log likelihood: -2124.882947
EM: Round [900] log likelihood: -2124.882377
EM: Round [901] log likelihood: -2124.881809
EM: Round [902] log likelihood: -2124.881242
EM: Round [903] log likelihood: -2124.880676
EM: Round [904] log likelihood: -2124.880112
EM: Round [905] log likelihood: -2124.879548
EM: Round [906] log likelihood: -2124.878986
EM: Round [907] log likelihood: -2124.878426
EM: Round [908] log likelihood: -2124.877867
EM: Round [909] log likelihood: -2124.877308
EM: Round [910] log likelihood: -2124.876752
EM: Round [911] log likelihood: -2124.876196
EM: Round [912] log likelihood: -2124.875642
EM: Round [913] log likelihood: -2124.875089
EM: Round [914] log likelihood: -2124.874537
EM: Round [915] log likelihood: -2124.873986
EM: Round [916] log likelihood: -2124.873437
EM: Round [917] log likelihood: -2124.872889
EM: Round [918] log likelihood: -2124.872342
EM: Round [919] log likelihood: -2124.871797
EM: Round [920] log likelihood: -2124.871252
EM: Round [921] log likelihood: -2124.870709
EM: Round [922] log likelihood: -2124.870167
EM: Round [923] log likelihood: -2124.869626
EM: Round [924] log likelihood: -2124.869087
EM: Round [925] log likelihood: -2124.868549
EM: Round [926] log likelihood: -2124.868012
EM: Round [927] log likelihood: -2124.867476
EM: Round [928] log likelihood: -2124.866941
EM: Round [929] log likelihood: -2124.866408
EM: Round [930] log likelihood: -2124.865876
EM: Round [931] log likelihood: -2124.865345
EM: Round [932] log likelihood: -2124.864815
EM: Round [933] log likelihood: -2124.864286
EM: Round [934] log likelihood: -2124.863759
EM: Round [935] log likelihood: -2124.863232
EM: Round [936] log likelihood: -2124.862707
EM: Round [937] log likelihood: -2124.862183
EM: Round [938] log likelihood: -2124.861661
EM: Round [939] log likelihood: -2124.861139
EM: Round [940] log likelihood: -2124.860619
EM: Round [941] log likelihood: -2124.860099
EM: Round [942] log likelihood: -2124.859581
EM: Round [943] log likelihood: -2124.859064
EM: Round [944] log likelihood: -2124.858549
EM: Round [945] log likelihood: -2124.858034
EM: Round [946] log likelihood: -2124.857521
EM: Round [947] log likelihood: -2124.857008
EM: Round [948] log likelihood: -2124.856497
EM: Round [949] log likelihood: -2124.855987
EM: Round [950] log likelihood: -2124.855478
EM: Round [951] log likelihood: -2124.854971
EM: Round [952] log likelihood: -2124.854464
EM: Round [953] log likelihood: -2124.853959
EM: Round [954] log likelihood: -2124.853454
EM: Round [955] log likelihood: -2124.852951
EM: Round [956] log likelihood: -2124.852449
EM: Round [957] log likelihood: -2124.851948
EM: Round [958] log likelihood: -2124.851448
EM: Round [959] log likelihood: -2124.850950
EM: Round [960] log likelihood: -2124.850452
EM: Round [961] log likelihood: -2124.849956
EM: Round [962] log likelihood: -2124.849460
EM: Round [963] log likelihood: -2124.848966
EM: Round [964] log likelihood: -2124.848473
EM: Round [965] log likelihood: -2124.847981
EM: Round [966] log likelihood: -2124.847490
EM: Round [967] log likelihood: -2124.847000
EM: Round [968] log likelihood: -2124.846511
EM: Round [969] log likelihood: -2124.846024
EM: Round [970] log likelihood: -2124.845537
EM: Round [971] log likelihood: -2124.845051
EM: Round [972] log likelihood: -2124.844567
EM: Round [973] log likelihood: -2124.844084
EM: Round [974] log likelihood: -2124.843601
EM: Round [975] log likelihood: -2124.843120
EM: Round [976] log likelihood: -2124.842640
EM: Round [977] log likelihood: -2124.842161
EM: Round [978] log likelihood: -2124.841683
EM: Round [979] log likelihood: -2124.841206
EM: Round [980] log likelihood: -2124.840730
EM: Round [981] log likelihood: -2124.840255
EM: Round [982] log likelihood: -2124.839782
EM: Round [983] log likelihood: -2124.839309
EM: Round [984] log likelihood: -2124.838837
EM: Round [985] log likelihood: -2124.838367
EM: Round [986] log likelihood: -2124.837897
EM: Round [987] log likelihood: -2124.837428
EM: Round [988] log likelihood: -2124.836961
EM: Round [989] log likelihood: -2124.836494
EM: Round [990] log likelihood: -2124.836029
EM: Round [991] log likelihood: -2124.835565
EM: Round [992] log likelihood: -2124.835101
EM: Round [993] log likelihood: -2124.834639
EM: Round [994] log likelihood: -2124.834178
EM: Round [995] log likelihood: -2124.833717
EM: Round [996] log likelihood: -2124.833258
EM: Round [997] log likelihood: -2124.832800
EM: Round [998] log likelihood: -2124.832342
EM: Round [999] log likelihood: -2124.831886
EM: Round [1000] log likelihood: -2124.831431
EM: Round [1001] log likelihood: -2124.830977
-total frags in /tmp/nxf.XczuaQ8A6Z/tih_rna_sample_00457_B23WHTKLT4_2_1.fastp.fastq.gz: 295945368
Warning - not locating file: /tmp/nxf.XczuaQ8A6Z/tih_rna_sample_00457_B23WHTKLT4_2.gmap_trinity_GG.fusions.gff3.bed
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
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ls: cannot access 'IGV_inputs': No such file or directory