Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_ciJ-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_ciJ-T1-TRNA-1_B23WHTKLT4_1.md.bam --METRICS_FILE 659_ciJ-T1-TRNA-1_B23WHTKLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:47:31.143 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:47:31 GMT 2026] MarkDuplicates --INPUT 659_ciJ-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_ciJ-T1-TRNA-1_B23WHTKLT4_1.md.bam --METRICS_FILE 659_ciJ-T1-TRNA-1_B23WHTKLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:47:31 GMT 2026] Executing as ?@nf-be114c979df55f22fa90556e75669f24-31697-gncxf on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:47:31 MarkDuplicates Start of doWork freeMemory: 105491024; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:47:31 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:47:31 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:47:36 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 3s. Last read position: chr1:1,050,733
INFO 2026-06-08 08:47:36 MarkDuplicates Tracking 4849 as yet unmatched pairs. 2530 records in RAM.
INFO 2026-06-08 08:47:38 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:1,437,098
INFO 2026-06-08 08:47:38 MarkDuplicates Tracking 7190 as yet unmatched pairs. 2076 records in RAM.
INFO 2026-06-08 08:47:41 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:2,402,916
INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 8226 as yet unmatched pairs. 614 records in RAM.
INFO 2026-06-08 08:47:42 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:6,550,472
INFO 2026-06-08 08:47:42 MarkDuplicates Tracking 10340 as yet unmatched pairs. 274 records in RAM.
INFO 2026-06-08 08:47:45 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:9,730,549
INFO 2026-06-08 08:47:45 MarkDuplicates Tracking 12127 as yet unmatched pairs. 167 records in RAM.
INFO 2026-06-08 08:47:47 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:11,949,794
INFO 2026-06-08 08:47:47 MarkDuplicates Tracking 14192 as yet unmatched pairs. 286 records in RAM.
INFO 2026-06-08 08:47:50 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:15,932,705
INFO 2026-06-08 08:47:50 MarkDuplicates Tracking 15966 as yet unmatched pairs. 368 records in RAM.
INFO 2026-06-08 08:47:52 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:19,110,135
INFO 2026-06-08 08:47:52 MarkDuplicates Tracking 18066 as yet unmatched pairs. 609 records in RAM.
INFO 2026-06-08 08:47:55 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:21,176,661
INFO 2026-06-08 08:47:55 MarkDuplicates Tracking 19407 as yet unmatched pairs. 248 records in RAM.
INFO 2026-06-08 08:47:57 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:21,852,720
INFO 2026-06-08 08:47:57 MarkDuplicates Tracking 22845 as yet unmatched pairs. 1777 records in RAM.
INFO 2026-06-08 08:47:59 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:22,639,379
INFO 2026-06-08 08:47:59 MarkDuplicates Tracking 30486 as yet unmatched pairs. 7584 records in RAM.
INFO 2026-06-08 08:48:02 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 3s. Last read position: chr1:23,796,524
INFO 2026-06-08 08:48:02 MarkDuplicates Tracking 25425 as yet unmatched pairs. 680 records in RAM.
INFO 2026-06-08 08:48:04 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:26,697,008
INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 26841 as yet unmatched pairs. 382 records in RAM.
INFO 2026-06-08 08:48:06 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:27,550,866
INFO 2026-06-08 08:48:06 MarkDuplicates Tracking 29270 as yet unmatched pairs. 858 records in RAM.
INFO 2026-06-08 08:48:08 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:29,325,635
INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 30913 as yet unmatched pairs. 569 records in RAM.
INFO 2026-06-08 08:48:10 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:32,334,677
INFO 2026-06-08 08:48:10 MarkDuplicates Tracking 33648 as yet unmatched pairs. 1355 records in RAM.
INFO 2026-06-08 08:48:12 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:35,190,567
INFO 2026-06-08 08:48:12 MarkDuplicates Tracking 36203 as yet unmatched pairs. 2044 records in RAM.
INFO 2026-06-08 08:48:15 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 3s. Last read position: chr1:36,468,115
INFO 2026-06-08 08:48:15 MarkDuplicates Tracking 36397 as yet unmatched pairs. 422 records in RAM.
INFO 2026-06-08 08:48:17 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:39,360,839
INFO 2026-06-08 08:48:17 MarkDuplicates Tracking 40597 as yet unmatched pairs. 2961 records in RAM.
INFO 2026-06-08 08:48:19 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:40,061,743
INFO 2026-06-08 08:48:19 MarkDuplicates Tracking 40103 as yet unmatched pairs. 957 records in RAM.
INFO 2026-06-08 08:48:22 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 2s. Last read position: chr1:43,431,516
INFO 2026-06-08 08:48:22 MarkDuplicates Tracking 41383 as yet unmatched pairs. 365 records in RAM.
INFO 2026-06-08 08:48:24 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:44,801,093
INFO 2026-06-08 08:48:24 MarkDuplicates Tracking 43347 as yet unmatched pairs. 379 records in RAM.
INFO 2026-06-08 08:48:26 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 2s. Last read position: chr1:47,048,532
INFO 2026-06-08 08:48:26 MarkDuplicates Tracking 45162 as yet unmatched pairs. 383 records in RAM.
INFO 2026-06-08 08:48:29 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 2s. Last read position: chr1:54,251,775
INFO 2026-06-08 08:48:29 MarkDuplicates Tracking 46842 as yet unmatched pairs. 353 records in RAM.
INFO 2026-06-08 08:48:30 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:64,803,048
INFO 2026-06-08 08:48:30 MarkDuplicates Tracking 48413 as yet unmatched pairs. 71 records in RAM.
INFO 2026-06-08 08:48:32 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:85,350,449
INFO 2026-06-08 08:48:32 MarkDuplicates Tracking 50246 as yet unmatched pairs. 279 records in RAM.
INFO 2026-06-08 08:48:35 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 2s. Last read position: chr1:96,679,326
INFO 2026-06-08 08:48:35 MarkDuplicates Tracking 51600 as yet unmatched pairs. 193 records in RAM.
INFO 2026-06-08 08:48:37 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 2s. Last read position: chr1:109,367,467
INFO 2026-06-08 08:48:37 MarkDuplicates Tracking 53291 as yet unmatched pairs. 376 records in RAM.
INFO 2026-06-08 08:48:39 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 2s. Last read position: chr1:112,702,658
INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 58036 as yet unmatched pairs. 3451 records in RAM.
INFO 2026-06-08 08:48:41 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 2s. Last read position: chr1:116,388,690
INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 58757 as yet unmatched pairs. 2555 records in RAM.
INFO 2026-06-08 08:48:43 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:119,925,502
INFO 2026-06-08 08:48:43 MarkDuplicates Tracking 59328 as yet unmatched pairs. 1543 records in RAM.
INFO 2026-06-08 08:48:45 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:120,834,537
INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 59536 as yet unmatched pairs. 504 records in RAM.
INFO 2026-06-08 08:48:47 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:146,126,366
INFO 2026-06-08 08:48:47 MarkDuplicates Tracking 60404 as yet unmatched pairs. 286 records in RAM.
INFO 2026-06-08 08:48:49 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 2s. Last read position: chr1:148,607,593
INFO 2026-06-08 08:48:49 MarkDuplicates Tracking 61294 as yet unmatched pairs. 540 records in RAM.
INFO 2026-06-08 08:48:51 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:150,157,472
INFO 2026-06-08 08:48:51 MarkDuplicates Tracking 62859 as yet unmatched pairs. 1092 records in RAM.
INFO 2026-06-08 08:48:53 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:150,927,782
INFO 2026-06-08 08:48:53 MarkDuplicates Tracking 63972 as yet unmatched pairs. 480 records in RAM.
INFO 2026-06-08 08:48:54 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:151,838,469
INFO 2026-06-08 08:48:54 MarkDuplicates Tracking 65626 as yet unmatched pairs. 261 records in RAM.
INFO 2026-06-08 08:48:56 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:153,975,823
INFO 2026-06-08 08:48:56 MarkDuplicates Tracking 67914 as yet unmatched pairs. 801 records in RAM.
INFO 2026-06-08 08:48:58 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:154,608,093
INFO 2026-06-08 08:48:58 MarkDuplicates Tracking 68816 as yet unmatched pairs. 36 records in RAM.
INFO 2026-06-08 08:49:00 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:155,186,174
INFO 2026-06-08 08:49:00 MarkDuplicates Tracking 77540 as yet unmatched pairs. 6885 records in RAM.
INFO 2026-06-08 08:49:01 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:155,202,224
INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 72254 as yet unmatched pairs. 483 records in RAM.
INFO 2026-06-08 08:49:04 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 2s. Last read position: chr1:155,952,776
INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 74497 as yet unmatched pairs. 1153 records in RAM.
INFO 2026-06-08 08:49:06 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 2s. Last read position: chr1:156,138,517
INFO 2026-06-08 08:49:06 MarkDuplicates Tracking 87170 as yet unmatched pairs. 11538 records in RAM.
INFO 2026-06-08 08:49:08 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 2s. Last read position: chr1:157,695,571
INFO 2026-06-08 08:49:08 MarkDuplicates Tracking 77518 as yet unmatched pairs. 84 records in RAM.
INFO 2026-06-08 08:49:10 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:160,548,250
INFO 2026-06-08 08:49:10 MarkDuplicates Tracking 79441 as yet unmatched pairs. 357 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:161,671,415
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 81402 as yet unmatched pairs. 743 records in RAM.
INFO 2026-06-08 08:49:13 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:171,207,728
INFO 2026-06-08 08:49:13 MarkDuplicates Tracking 82952 as yet unmatched pairs. 585 records in RAM.
INFO 2026-06-08 08:49:15 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:180,175,965
INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 86704 as yet unmatched pairs. 2748 records in RAM.
INFO 2026-06-08 08:49:17 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:183,542,432
INFO 2026-06-08 08:49:17 MarkDuplicates Tracking 86011 as yet unmatched pairs. 145 records in RAM.
INFO 2026-06-08 08:49:18 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:194,091,189
INFO 2026-06-08 08:49:18 MarkDuplicates Tracking 87359 as yet unmatched pairs. 5 records in RAM.
INFO 2026-06-08 08:49:20 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:202,348,852
INFO 2026-06-08 08:49:20 MarkDuplicates Tracking 89545 as yet unmatched pairs. 514 records in RAM.
INFO 2026-06-08 08:49:22 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 2s. Last read position: chr1:204,257,775
INFO 2026-06-08 08:49:22 MarkDuplicates Tracking 90711 as yet unmatched pairs. 106 records in RAM.
INFO 2026-06-08 08:49:25 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 2s. Last read position: chr1:206,931,792
INFO 2026-06-08 08:49:25 MarkDuplicates Tracking 96009 as yet unmatched pairs. 3907 records in RAM.
INFO 2026-06-08 08:49:26 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr1:208,043,073
INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 94330 as yet unmatched pairs. 402 records in RAM.
INFO 2026-06-08 08:49:28 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr1:222,725,523
INFO 2026-06-08 08:49:28 MarkDuplicates Tracking 96023 as yet unmatched pairs. 377 records in RAM.
INFO 2026-06-08 08:49:30 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr1:225,519,249
INFO 2026-06-08 08:49:30 MarkDuplicates Tracking 97494 as yet unmatched pairs. 194 records in RAM.
INFO 2026-06-08 08:49:32 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr1:228,243,316
INFO 2026-06-08 08:49:32 MarkDuplicates Tracking 99552 as yet unmatched pairs. 318 records in RAM.
INFO 2026-06-08 08:49:34 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr1:234,357,028
INFO 2026-06-08 08:49:34 MarkDuplicates Tracking 101471 as yet unmatched pairs. 13 records in RAM.
INFO 2026-06-08 08:49:36 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr1:243,615,130
INFO 2026-06-08 08:49:36 MarkDuplicates Tracking 104038 as yet unmatched pairs. 473 records in RAM.
INFO 2026-06-08 08:49:38 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 2s. Last read position: chr2:3,465,620
INFO 2026-06-08 08:49:38 MarkDuplicates Tracking 105774 as yet unmatched pairs. 105109 records in RAM.
INFO 2026-06-08 08:49:41 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 2s. Last read position: chr2:17,931,071
INFO 2026-06-08 08:49:41 MarkDuplicates Tracking 107703 as yet unmatched pairs. 107026 records in RAM.
INFO 2026-06-08 08:49:43 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 2s. Last read position: chr2:20,638,336
INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 109473 as yet unmatched pairs. 108783 records in RAM.
INFO 2026-06-08 08:49:46 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 2s. Last read position: chr2:27,082,634
INFO 2026-06-08 08:49:46 MarkDuplicates Tracking 112213 as yet unmatched pairs. 111496 records in RAM.
INFO 2026-06-08 08:49:48 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 2s. Last read position: chr2:28,781,809
INFO 2026-06-08 08:49:48 MarkDuplicates Tracking 116813 as yet unmatched pairs. 116083 records in RAM.
INFO 2026-06-08 08:49:49 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,256
INFO 2026-06-08 08:49:49 MarkDuplicates Tracking 166449 as yet unmatched pairs. 109682 records in RAM.
INFO 2026-06-08 08:49:52 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:49:52 MarkDuplicates Tracking 549859 as yet unmatched pairs. 84298 records in RAM.
INFO 2026-06-08 08:49:55 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:49:55 MarkDuplicates Tracking 902384 as yet unmatched pairs. 62190 records in RAM.
INFO 2026-06-08 08:49:56 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:33,585,425
INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 963302 as yet unmatched pairs. 58496 records in RAM.
INFO 2026-06-08 08:49:58 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:42,329,960
INFO 2026-06-08 08:49:58 MarkDuplicates Tracking 963388 as yet unmatched pairs. 58573 records in RAM.
INFO 2026-06-08 08:49:59 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:46,380,682
INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 961297 as yet unmatched pairs. 56470 records in RAM.
INFO 2026-06-08 08:50:01 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:54,645,930
INFO 2026-06-08 08:50:01 MarkDuplicates Tracking 958556 as yet unmatched pairs. 53714 records in RAM.
INFO 2026-06-08 08:50:03 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:61,482,959
INFO 2026-06-08 08:50:03 MarkDuplicates Tracking 956474 as yet unmatched pairs. 51581 records in RAM.
INFO 2026-06-08 08:50:06 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 2s. Last read position: chr2:70,088,757
INFO 2026-06-08 08:50:06 MarkDuplicates Tracking 955534 as yet unmatched pairs. 50628 records in RAM.
INFO 2026-06-08 08:50:08 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 2s. Last read position: chr2:74,368,067
INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 954228 as yet unmatched pairs. 49313 records in RAM.
INFO 2026-06-08 08:50:10 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:85,398,092
INFO 2026-06-08 08:50:10 MarkDuplicates Tracking 953261 as yet unmatched pairs. 48339 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:85,663,489
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 972763 as yet unmatched pairs. 67816 records in RAM.
INFO 2026-06-08 08:50:14 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 2s. Last read position: chr2:85,666,722
INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 977481 as yet unmatched pairs. 72531 records in RAM.
INFO 2026-06-08 08:50:16 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:88,857,372
INFO 2026-06-08 08:50:16 MarkDuplicates Tracking 956808 as yet unmatched pairs. 51850 records in RAM.
INFO 2026-06-08 08:50:17 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:95,958,613
INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 945765 as yet unmatched pairs. 40791 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:97,658,559
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 943372 as yet unmatched pairs. 38396 records in RAM.
INFO 2026-06-08 08:50:22 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 3s. Last read position: chr2:105,881,332
INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 940932 as yet unmatched pairs. 35945 records in RAM.
INFO 2026-06-08 08:50:24 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:109,837,427
INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 939842 as yet unmatched pairs. 34849 records in RAM.
INFO 2026-06-08 08:50:26 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:113,127,685
INFO 2026-06-08 08:50:26 MarkDuplicates Tracking 938681 as yet unmatched pairs. 33673 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:127,062,130
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 937855 as yet unmatched pairs. 32825 records in RAM.
INFO 2026-06-08 08:50:29 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:135,866,680
INFO 2026-06-08 08:50:29 MarkDuplicates Tracking 935301 as yet unmatched pairs. 30268 records in RAM.
INFO 2026-06-08 08:50:31 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:159,229,629
INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 933980 as yet unmatched pairs. 28926 records in RAM.
INFO 2026-06-08 08:50:33 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:171,725,932
INFO 2026-06-08 08:50:33 MarkDuplicates Tracking 932484 as yet unmatched pairs. 27408 records in RAM.
INFO 2026-06-08 08:50:35 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:178,738,264
INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 930826 as yet unmatched pairs. 25747 records in RAM.
INFO 2026-06-08 08:50:37 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 2s. Last read position: chr2:189,005,402
INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 932122 as yet unmatched pairs. 27042 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 2s. Last read position: chr2:196,137,517
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 928377 as yet unmatched pairs. 23294 records in RAM.
INFO 2026-06-08 08:50:42 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 2s. Last read position: chr2:202,284,452
INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 926165 as yet unmatched pairs. 21058 records in RAM.
INFO 2026-06-08 08:50:43 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr2:213,013,803
INFO 2026-06-08 08:50:43 MarkDuplicates Tracking 924546 as yet unmatched pairs. 19430 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:215,375,360
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 929238 as yet unmatched pairs. 24114 records in RAM.
INFO 2026-06-08 08:50:47 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:215,397,140
INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 938408 as yet unmatched pairs. 33284 records in RAM.
INFO 2026-06-08 08:50:49 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr2:215,420,800
INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 924669 as yet unmatched pairs. 19545 records in RAM.
INFO 2026-06-08 08:50:52 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 2s. Last read position: chr2:216,499,374
INFO 2026-06-08 08:50:52 MarkDuplicates Tracking 927009 as yet unmatched pairs. 21885 records in RAM.
INFO 2026-06-08 08:50:54 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 2s. Last read position: chr2:218,276,026
INFO 2026-06-08 08:50:54 MarkDuplicates Tracking 918876 as yet unmatched pairs. 13740 records in RAM.
INFO 2026-06-08 08:50:56 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr2:219,448,152
INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 915891 as yet unmatched pairs. 10740 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr2:227,033,428
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 913411 as yet unmatched pairs. 8257 records in RAM.
INFO 2026-06-08 08:51:00 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr2:231,712,497
INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 913547 as yet unmatched pairs. 8387 records in RAM.
INFO 2026-06-08 08:51:02 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr2:237,360,098
INFO 2026-06-08 08:51:02 MarkDuplicates Tracking 911888 as yet unmatched pairs. 6705 records in RAM.
INFO 2026-06-08 08:51:04 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr2:238,256,922
INFO 2026-06-08 08:51:04 MarkDuplicates Tracking 908635 as yet unmatched pairs. 3440 records in RAM.
INFO 2026-06-08 08:51:05 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr2:241,256,388
INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 907266 as yet unmatched pairs. 2065 records in RAM.
INFO 2026-06-08 08:51:08 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 2s. Last read position: chr3:9,366,915
INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 904227 as yet unmatched pairs. 45513 records in RAM.
INFO 2026-06-08 08:51:11 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 2s. Last read position: chr3:12,584,578
INFO 2026-06-08 08:51:11 MarkDuplicates Tracking 903839 as yet unmatched pairs. 45124 records in RAM.
INFO 2026-06-08 08:51:13 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 2s. Last read position: chr3:15,251,130
INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 900680 as yet unmatched pairs. 41956 records in RAM.
INFO 2026-06-08 08:51:15 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:32,158,949
INFO 2026-06-08 08:51:15 MarkDuplicates Tracking 899247 as yet unmatched pairs. 40500 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:38,131,995
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 897440 as yet unmatched pairs. 38679 records in RAM.
INFO 2026-06-08 08:51:18 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr3:41,225,459
INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 897307 as yet unmatched pairs. 38540 records in RAM.
INFO 2026-06-08 08:51:20 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:45,946,144
INFO 2026-06-08 08:51:20 MarkDuplicates Tracking 893672 as yet unmatched pairs. 34904 records in RAM.
INFO 2026-06-08 08:51:22 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 2s. Last read position: chr3:47,875,641
INFO 2026-06-08 08:51:22 MarkDuplicates Tracking 891675 as yet unmatched pairs. 32901 records in RAM.
INFO 2026-06-08 08:51:24 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:49,057,457
INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 889912 as yet unmatched pairs. 31136 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:49,809,140
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 888430 as yet unmatched pairs. 29652 records in RAM.
INFO 2026-06-08 08:51:28 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 2s. Last read position: chr3:51,639,503
INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 886054 as yet unmatched pairs. 27272 records in RAM.
INFO 2026-06-08 08:51:30 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 2s. Last read position: chr3:52,524,193
INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 884386 as yet unmatched pairs. 25598 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:61,623,668
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 882893 as yet unmatched pairs. 24100 records in RAM.
INFO 2026-06-08 08:51:34 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:96,350,563
INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 880683 as yet unmatched pairs. 21884 records in RAM.
INFO 2026-06-08 08:51:36 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:108,080,045
INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 879416 as yet unmatched pairs. 20611 records in RAM.
INFO 2026-06-08 08:51:37 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:121,695,209
INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 878070 as yet unmatched pairs. 19235 records in RAM.
INFO 2026-06-08 08:51:39 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:124,848,404
INFO 2026-06-08 08:51:39 MarkDuplicates Tracking 876380 as yet unmatched pairs. 17529 records in RAM.
INFO 2026-06-08 08:51:41 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr3:128,726,314
INFO 2026-06-08 08:51:41 MarkDuplicates Tracking 875243 as yet unmatched pairs. 16375 records in RAM.
INFO 2026-06-08 08:51:43 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr3:129,574,454
INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 875182 as yet unmatched pairs. 16314 records in RAM.
INFO 2026-06-08 08:51:45 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:133,947,345
INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 870578 as yet unmatched pairs. 11701 records in RAM.
INFO 2026-06-08 08:51:47 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr3:146,528,660
INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 869643 as yet unmatched pairs. 10761 records in RAM.
INFO 2026-06-08 08:51:48 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr3:157,148,172
INFO 2026-06-08 08:51:48 MarkDuplicates Tracking 867632 as yet unmatched pairs. 8736 records in RAM.
INFO 2026-06-08 08:51:50 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr3:177,064,959
INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 865259 as yet unmatched pairs. 6351 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr3:184,308,718
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 864755 as yet unmatched pairs. 5833 records in RAM.
INFO 2026-06-08 08:51:54 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr3:187,043,259
INFO 2026-06-08 08:51:54 MarkDuplicates Tracking 862464 as yet unmatched pairs. 3536 records in RAM.
INFO 2026-06-08 08:51:55 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr3:195,779,144
INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 860557 as yet unmatched pairs. 1623 records in RAM.
INFO 2026-06-08 08:51:58 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 2s. Last read position: chr4:664,173
INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 858936 as yet unmatched pairs. 30881 records in RAM.
INFO 2026-06-08 08:52:00 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 2s. Last read position: chr4:1,730,924
INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 857198 as yet unmatched pairs. 29138 records in RAM.
INFO 2026-06-08 08:52:02 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 2s. Last read position: chr4:3,225,548
INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 854646 as yet unmatched pairs. 26573 records in RAM.
INFO 2026-06-08 08:52:05 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 2s. Last read position: chr4:8,286,642
INFO 2026-06-08 08:52:05 MarkDuplicates Tracking 852477 as yet unmatched pairs. 24398 records in RAM.
INFO 2026-06-08 08:52:06 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr4:25,655,866
INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 854960 as yet unmatched pairs. 26878 records in RAM.
INFO 2026-06-08 08:52:08 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr4:25,669,645
INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 863869 as yet unmatched pairs. 35787 records in RAM.
INFO 2026-06-08 08:52:10 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr4:25,674,527
INFO 2026-06-08 08:52:10 MarkDuplicates Tracking 863900 as yet unmatched pairs. 35818 records in RAM.
INFO 2026-06-08 08:52:12 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr4:25,676,711
INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 852537 as yet unmatched pairs. 24455 records in RAM.
INFO 2026-06-08 08:52:14 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr4:39,902,402
INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 844980 as yet unmatched pairs. 16889 records in RAM.
INFO 2026-06-08 08:52:15 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr4:55,079,846
INFO 2026-06-08 08:52:15 MarkDuplicates Tracking 843474 as yet unmatched pairs. 15366 records in RAM.
INFO 2026-06-08 08:52:17 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr4:71,187,331
INFO 2026-06-08 08:52:17 MarkDuplicates Tracking 841517 as yet unmatched pairs. 13397 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr4:77,157,440
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 839892 as yet unmatched pairs. 11768 records in RAM.
INFO 2026-06-08 08:52:21 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr4:87,046,961
INFO 2026-06-08 08:52:21 MarkDuplicates Tracking 838654 as yet unmatched pairs. 10506 records in RAM.
INFO 2026-06-08 08:52:23 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr4:99,315,990
INFO 2026-06-08 08:52:23 MarkDuplicates Tracking 837807 as yet unmatched pairs. 9652 records in RAM.
INFO 2026-06-08 08:52:25 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr4:113,537,367
INFO 2026-06-08 08:52:25 MarkDuplicates Tracking 835627 as yet unmatched pairs. 7463 records in RAM.
INFO 2026-06-08 08:52:27 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 2s. Last read position: chr4:139,071,949
INFO 2026-06-08 08:52:27 MarkDuplicates Tracking 834035 as yet unmatched pairs. 5871 records in RAM.
INFO 2026-06-08 08:52:29 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr4:151,101,053
INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 834553 as yet unmatched pairs. 6380 records in RAM.
INFO 2026-06-08 08:52:31 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 2s. Last read position: chr4:165,484,456
INFO 2026-06-08 08:52:31 MarkDuplicates Tracking 830497 as yet unmatched pairs. 2314 records in RAM.
INFO 2026-06-08 08:52:33 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr4:186,590,546
INFO 2026-06-08 08:52:33 MarkDuplicates Tracking 828737 as yet unmatched pairs. 532 records in RAM.
INFO 2026-06-08 08:52:35 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 2s. Last read position: chr5:1,589,322
INFO 2026-06-08 08:52:35 MarkDuplicates Tracking 826875 as yet unmatched pairs. 47236 records in RAM.
INFO 2026-06-08 08:52:37 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:14,397,065
INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 825946 as yet unmatched pairs. 46307 records in RAM.
INFO 2026-06-08 08:52:39 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:34,824,137
INFO 2026-06-08 08:52:39 MarkDuplicates Tracking 823040 as yet unmatched pairs. 43393 records in RAM.
INFO 2026-06-08 08:52:41 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr5:43,174,444
INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 821473 as yet unmatched pairs. 41817 records in RAM.
INFO 2026-06-08 08:52:43 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:65,664,264
INFO 2026-06-08 08:52:43 MarkDuplicates Tracking 819908 as yet unmatched pairs. 40246 records in RAM.
INFO 2026-06-08 08:52:44 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr5:71,109,055
INFO 2026-06-08 08:52:44 MarkDuplicates Tracking 818884 as yet unmatched pairs. 39222 records in RAM.
INFO 2026-06-08 08:52:46 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 2s. Last read position: chr5:80,035,498
INFO 2026-06-08 08:52:46 MarkDuplicates Tracking 819369 as yet unmatched pairs. 39690 records in RAM.
INFO 2026-06-08 08:52:48 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr5:93,585,350
INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 815950 as yet unmatched pairs. 36261 records in RAM.
INFO 2026-06-08 08:52:50 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:110,739,081
INFO 2026-06-08 08:52:50 MarkDuplicates Tracking 814586 as yet unmatched pairs. 34877 records in RAM.
INFO 2026-06-08 08:52:52 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:131,709,250
INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 812676 as yet unmatched pairs. 32962 records in RAM.
INFO 2026-06-08 08:52:54 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr5:136,054,018
INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 810772 as yet unmatched pairs. 31044 records in RAM.
INFO 2026-06-08 08:52:56 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr5:139,477,477
INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 809375 as yet unmatched pairs. 29643 records in RAM.
INFO 2026-06-08 08:52:57 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr5:141,215,796
INFO 2026-06-08 08:52:57 MarkDuplicates Tracking 807594 as yet unmatched pairs. 27859 records in RAM.
INFO 2026-06-08 08:52:59 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr5:141,865,068
INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 806612 as yet unmatched pairs. 26873 records in RAM.
INFO 2026-06-08 08:53:01 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr5:150,050,415
INFO 2026-06-08 08:53:01 MarkDuplicates Tracking 804358 as yet unmatched pairs. 24613 records in RAM.
INFO 2026-06-08 08:53:03 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,167
INFO 2026-06-08 08:53:03 MarkDuplicates Tracking 868565 as yet unmatched pairs. 88820 records in RAM.
INFO 2026-06-08 08:53:05 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 2s. Last read position: chr5:150,402,604
INFO 2026-06-08 08:53:05 MarkDuplicates Tracking 869854 as yet unmatched pairs. 90103 records in RAM.
INFO 2026-06-08 08:53:07 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,102
INFO 2026-06-08 08:53:07 MarkDuplicates Tracking 861320 as yet unmatched pairs. 81558 records in RAM.
INFO 2026-06-08 08:53:10 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 3s. Last read position: chr5:150,406,298
INFO 2026-06-08 08:53:10 MarkDuplicates Tracking 911405 as yet unmatched pairs. 131641 records in RAM.
INFO 2026-06-08 08:53:12 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr5:150,407,284
INFO 2026-06-08 08:53:12 MarkDuplicates Tracking 815726 as yet unmatched pairs. 35962 records in RAM.
INFO 2026-06-08 08:53:14 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr5:151,028,076
INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 794778 as yet unmatched pairs. 15013 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr5:157,106,919
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 791945 as yet unmatched pairs. 12176 records in RAM.
INFO 2026-06-08 08:53:18 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr5:171,387,884
INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 794312 as yet unmatched pairs. 14537 records in RAM.
INFO 2026-06-08 08:53:20 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 2s. Last read position: chr5:176,389,391
INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 789224 as yet unmatched pairs. 9444 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr5:177,876,561
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 786324 as yet unmatched pairs. 6538 records in RAM.
INFO 2026-06-08 08:53:24 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr5:179,821,116
INFO 2026-06-08 08:53:24 MarkDuplicates Tracking 791936 as yet unmatched pairs. 12140 records in RAM.
INFO 2026-06-08 08:53:26 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr5:180,590,218
INFO 2026-06-08 08:53:26 MarkDuplicates Tracking 825056 as yet unmatched pairs. 45260 records in RAM.
INFO 2026-06-08 08:53:28 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 2s. Last read position: chr6:348,163
INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 781026 as yet unmatched pairs. 54667 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:7,231,600
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 779482 as yet unmatched pairs. 53121 records in RAM.
INFO 2026-06-08 08:53:32 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:13,641,265
INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 776122 as yet unmatched pairs. 49757 records in RAM.
INFO 2026-06-08 08:53:35 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 2s. Last read position: chr6:26,127,872
INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 774077 as yet unmatched pairs. 47703 records in RAM.
INFO 2026-06-08 08:53:36 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr6:29,889,376
INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 777622 as yet unmatched pairs. 51242 records in RAM.
INFO 2026-06-08 08:53:38 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr6:30,489,945
INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 776216 as yet unmatched pairs. 49834 records in RAM.
INFO 2026-06-08 08:53:40 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:30,897,065
INFO 2026-06-08 08:53:40 MarkDuplicates Tracking 770937 as yet unmatched pairs. 44555 records in RAM.
INFO 2026-06-08 08:53:42 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr6:31,354,001
INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 774078 as yet unmatched pairs. 47695 records in RAM.
INFO 2026-06-08 08:53:43 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:31,633,559
INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 766827 as yet unmatched pairs. 40442 records in RAM.
INFO 2026-06-08 08:53:45 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:31,817,150
INFO 2026-06-08 08:53:45 MarkDuplicates Tracking 765104 as yet unmatched pairs. 38717 records in RAM.
INFO 2026-06-08 08:53:47 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:31,982,875
INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 763188 as yet unmatched pairs. 36801 records in RAM.
INFO 2026-06-08 08:53:48 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr6:32,050,079
INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 763859 as yet unmatched pairs. 37472 records in RAM.
INFO 2026-06-08 08:53:50 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:32,187,286
INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 760607 as yet unmatched pairs. 34220 records in RAM.
INFO 2026-06-08 08:53:52 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 2s. Last read position: chr6:32,579,086
INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 765355 as yet unmatched pairs. 38968 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 2s. Last read position: chr6:32,848,750
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 758715 as yet unmatched pairs. 32328 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 2s. Last read position: chr6:33,085,813
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 758400 as yet unmatched pairs. 32012 records in RAM.
INFO 2026-06-08 08:53:58 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr6:33,414,346
INFO 2026-06-08 08:53:58 MarkDuplicates Tracking 755189 as yet unmatched pairs. 28798 records in RAM.
INFO 2026-06-08 08:54:00 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr6:34,425,123
INFO 2026-06-08 08:54:00 MarkDuplicates Tracking 751237 as yet unmatched pairs. 24839 records in RAM.
INFO 2026-06-08 08:54:02 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr6:36,978,078
INFO 2026-06-08 08:54:02 MarkDuplicates Tracking 750920 as yet unmatched pairs. 24508 records in RAM.
INFO 2026-06-08 08:54:03 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr6:41,940,899
INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 748607 as yet unmatched pairs. 22183 records in RAM.
INFO 2026-06-08 08:54:05 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr6:43,432,772
INFO 2026-06-08 08:54:05 MarkDuplicates Tracking 746235 as yet unmatched pairs. 19798 records in RAM.
INFO 2026-06-08 08:54:07 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr6:46,708,030
INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 743973 as yet unmatched pairs. 17526 records in RAM.
INFO 2026-06-08 08:54:08 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr6:56,609,060
INFO 2026-06-08 08:54:08 MarkDuplicates Tracking 742668 as yet unmatched pairs. 16212 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr6:85,558,050
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 741299 as yet unmatched pairs. 14832 records in RAM.
INFO 2026-06-08 08:54:12 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr6:108,366,284
INFO 2026-06-08 08:54:12 MarkDuplicates Tracking 739107 as yet unmatched pairs. 12626 records in RAM.
INFO 2026-06-08 08:54:14 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 2s. Last read position: chr6:117,310,197
INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 738882 as yet unmatched pairs. 12394 records in RAM.
INFO 2026-06-08 08:54:16 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr6:129,427,817
INFO 2026-06-08 08:54:16 MarkDuplicates Tracking 735761 as yet unmatched pairs. 9272 records in RAM.
INFO 2026-06-08 08:54:17 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr6:138,321,156
INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 734486 as yet unmatched pairs. 7979 records in RAM.
INFO 2026-06-08 08:54:19 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr6:149,731,703
INFO 2026-06-08 08:54:19 MarkDuplicates Tracking 732229 as yet unmatched pairs. 5721 records in RAM.
INFO 2026-06-08 08:54:20 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr6:157,896,845
INFO 2026-06-08 08:54:20 MarkDuplicates Tracking 731003 as yet unmatched pairs. 4486 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr6:159,682,555
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 730412 as yet unmatched pairs. 3895 records in RAM.
INFO 2026-06-08 08:54:24 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr6:169,229,590
INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 727274 as yet unmatched pairs. 757 records in RAM.
INFO 2026-06-08 08:54:26 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 2s. Last read position: chr7:2,257,012
INFO 2026-06-08 08:54:26 MarkDuplicates Tracking 724939 as yet unmatched pairs. 45476 records in RAM.
INFO 2026-06-08 08:54:27 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:5,320,369
INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 723248 as yet unmatched pairs. 43774 records in RAM.
INFO 2026-06-08 08:54:29 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,155
INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 739514 as yet unmatched pairs. 60036 records in RAM.
INFO 2026-06-08 08:54:31 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:6,436,369
INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 719152 as yet unmatched pairs. 39668 records in RAM.
INFO 2026-06-08 08:54:33 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:22,146,978
INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 717445 as yet unmatched pairs. 37950 records in RAM.
INFO 2026-06-08 08:54:34 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr7:30,923,581
INFO 2026-06-08 08:54:34 MarkDuplicates Tracking 715585 as yet unmatched pairs. 36076 records in RAM.
INFO 2026-06-08 08:54:36 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr7:44,079,888
INFO 2026-06-08 08:54:36 MarkDuplicates Tracking 714152 as yet unmatched pairs. 34640 records in RAM.
INFO 2026-06-08 08:54:39 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 3s. Last read position: chr7:45,104,519
INFO 2026-06-08 08:54:39 MarkDuplicates Tracking 712780 as yet unmatched pairs. 33266 records in RAM.
INFO 2026-06-08 08:54:40 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr7:56,079,721
INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 711883 as yet unmatched pairs. 32363 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:73,179,217
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 708877 as yet unmatched pairs. 29355 records in RAM.
INFO 2026-06-08 08:54:43 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:74,099,073
INFO 2026-06-08 08:54:43 MarkDuplicates Tracking 707455 as yet unmatched pairs. 27930 records in RAM.
INFO 2026-06-08 08:54:45 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr7:75,545,106
INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 705892 as yet unmatched pairs. 26366 records in RAM.
INFO 2026-06-08 08:54:47 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr7:77,121,748
INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 704155 as yet unmatched pairs. 24626 records in RAM.
INFO 2026-06-08 08:54:48 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr7:92,578,351
INFO 2026-06-08 08:54:48 MarkDuplicates Tracking 702285 as yet unmatched pairs. 22749 records in RAM.
INFO 2026-06-08 08:54:50 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr7:95,596,199
INFO 2026-06-08 08:54:50 MarkDuplicates Tracking 701408 as yet unmatched pairs. 21867 records in RAM.
INFO 2026-06-08 08:54:51 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr7:99,876,873
INFO 2026-06-08 08:54:51 MarkDuplicates Tracking 698598 as yet unmatched pairs. 19054 records in RAM.
INFO 2026-06-08 08:54:53 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr7:100,681,544
INFO 2026-06-08 08:54:53 MarkDuplicates Tracking 696778 as yet unmatched pairs. 17229 records in RAM.
INFO 2026-06-08 08:54:54 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr7:102,201,855
INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 695732 as yet unmatched pairs. 16183 records in RAM.
INFO 2026-06-08 08:54:56 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr7:105,167,453
INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 693398 as yet unmatched pairs. 13834 records in RAM.
INFO 2026-06-08 08:54:58 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr7:116,699,705
INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 692362 as yet unmatched pairs. 12784 records in RAM.
INFO 2026-06-08 08:55:00 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr7:128,030,426
INFO 2026-06-08 08:55:00 MarkDuplicates Tracking 694711 as yet unmatched pairs. 15133 records in RAM.
INFO 2026-06-08 08:55:01 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr7:134,950,448
INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 689914 as yet unmatched pairs. 10321 records in RAM.
INFO 2026-06-08 08:55:03 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr7:139,962,044
INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 687758 as yet unmatched pairs. 8155 records in RAM.
INFO 2026-06-08 08:55:04 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr7:143,814,696
INFO 2026-06-08 08:55:04 MarkDuplicates Tracking 685543 as yet unmatched pairs. 5940 records in RAM.
INFO 2026-06-08 08:55:06 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr7:150,371,521
INFO 2026-06-08 08:55:06 MarkDuplicates Tracking 687194 as yet unmatched pairs. 7589 records in RAM.
INFO 2026-06-08 08:55:08 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr7:151,376,684
INFO 2026-06-08 08:55:08 MarkDuplicates Tracking 682012 as yet unmatched pairs. 2403 records in RAM.
INFO 2026-06-08 08:55:09 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr7:158,923,627
INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 680012 as yet unmatched pairs. 402 records in RAM.
INFO 2026-06-08 08:55:11 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr8:16,150,294
INFO 2026-06-08 08:55:11 MarkDuplicates Tracking 678068 as yet unmatched pairs. 34274 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 2s. Last read position: chr8:22,163,120
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 696146 as yet unmatched pairs. 52351 records in RAM.
INFO 2026-06-08 08:55:15 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 2s. Last read position: chr8:22,624,290
INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 674440 as yet unmatched pairs. 30645 records in RAM.
INFO 2026-06-08 08:55:17 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr8:27,604,967
INFO 2026-06-08 08:55:17 MarkDuplicates Tracking 673967 as yet unmatched pairs. 30169 records in RAM.
INFO 2026-06-08 08:55:18 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 1s. Last read position: chr8:38,252,970
INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 670718 as yet unmatched pairs. 26917 records in RAM.
INFO 2026-06-08 08:55:20 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 1s. Last read position: chr8:41,933,286
INFO 2026-06-08 08:55:20 MarkDuplicates Tracking 669711 as yet unmatched pairs. 25908 records in RAM.
INFO 2026-06-08 08:55:22 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr8:47,852,687
INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 667061 as yet unmatched pairs. 23257 records in RAM.
INFO 2026-06-08 08:55:23 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr8:65,779,730
INFO 2026-06-08 08:55:23 MarkDuplicates Tracking 665759 as yet unmatched pairs. 21951 records in RAM.
INFO 2026-06-08 08:55:26 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 2s. Last read position: chr8:85,250,742
INFO 2026-06-08 08:55:26 MarkDuplicates Tracking 663994 as yet unmatched pairs. 20183 records in RAM.
INFO 2026-06-08 08:55:27 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr8:100,703,330
INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 666267 as yet unmatched pairs. 22455 records in RAM.
INFO 2026-06-08 08:55:29 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 1s. Last read position: chr8:109,575,299
INFO 2026-06-08 08:55:29 MarkDuplicates Tracking 661505 as yet unmatched pairs. 17678 records in RAM.
INFO 2026-06-08 08:56:34 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 65s. Last read position: chr8:127,740,395
INFO 2026-06-08 08:56:34 MarkDuplicates Tracking 660676 as yet unmatched pairs. 16838 records in RAM.
INFO 2026-06-08 08:56:36 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 2s. Last read position: chr8:142,665,147
INFO 2026-06-08 08:56:36 MarkDuplicates Tracking 657480 as yet unmatched pairs. 13623 records in RAM.
INFO 2026-06-08 08:56:38 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr8:143,727,110
INFO 2026-06-08 08:56:38 MarkDuplicates Tracking 655183 as yet unmatched pairs. 11311 records in RAM.
INFO 2026-06-08 08:56:39 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,502
INFO 2026-06-08 08:56:39 MarkDuplicates Tracking 653426 as yet unmatched pairs. 9542 records in RAM.
INFO 2026-06-08 08:56:41 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr8:143,873,155
INFO 2026-06-08 08:56:41 MarkDuplicates Tracking 652804 as yet unmatched pairs. 8918 records in RAM.
INFO 2026-06-08 08:56:42 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr8:143,924,851
INFO 2026-06-08 08:56:42 MarkDuplicates Tracking 650400 as yet unmatched pairs. 6508 records in RAM.
INFO 2026-06-08 08:56:44 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr8:144,082,658
INFO 2026-06-08 08:56:44 MarkDuplicates Tracking 647870 as yet unmatched pairs. 3978 records in RAM.
INFO 2026-06-08 08:56:46 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr8:144,500,067
INFO 2026-06-08 08:56:46 MarkDuplicates Tracking 645362 as yet unmatched pairs. 1459 records in RAM.
INFO 2026-06-08 08:56:47 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr9:5,754,914
INFO 2026-06-08 08:56:47 MarkDuplicates Tracking 643184 as yet unmatched pairs. 39808 records in RAM.
INFO 2026-06-08 08:56:49 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr9:21,333,237
INFO 2026-06-08 08:56:49 MarkDuplicates Tracking 642061 as yet unmatched pairs. 38659 records in RAM.
INFO 2026-06-08 08:56:51 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr9:34,098,464
INFO 2026-06-08 08:56:51 MarkDuplicates Tracking 640328 as yet unmatched pairs. 36923 records in RAM.
INFO 2026-06-08 08:56:53 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr9:35,703,587
INFO 2026-06-08 08:56:53 MarkDuplicates Tracking 639522 as yet unmatched pairs. 36117 records in RAM.
INFO 2026-06-08 08:56:54 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr9:38,068,609
INFO 2026-06-08 08:56:54 MarkDuplicates Tracking 635926 as yet unmatched pairs. 32520 records in RAM.
INFO 2026-06-08 08:56:56 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr9:77,403,234
INFO 2026-06-08 08:56:56 MarkDuplicates Tracking 634886 as yet unmatched pairs. 31471 records in RAM.
INFO 2026-06-08 08:56:57 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr9:91,220,974
INFO 2026-06-08 08:56:57 MarkDuplicates Tracking 633099 as yet unmatched pairs. 29683 records in RAM.
INFO 2026-06-08 08:56:59 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr9:96,932,149
INFO 2026-06-08 08:56:59 MarkDuplicates Tracking 631609 as yet unmatched pairs. 28190 records in RAM.
INFO 2026-06-08 08:57:01 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 2s. Last read position: chr9:107,306,393
INFO 2026-06-08 08:57:01 MarkDuplicates Tracking 630325 as yet unmatched pairs. 26901 records in RAM.
INFO 2026-06-08 08:57:02 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr9:113,258,756
INFO 2026-06-08 08:57:02 MarkDuplicates Tracking 628184 as yet unmatched pairs. 24760 records in RAM.
INFO 2026-06-08 08:57:04 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr9:115,073,631
INFO 2026-06-08 08:57:04 MarkDuplicates Tracking 627673 as yet unmatched pairs. 24249 records in RAM.
INFO 2026-06-08 08:57:06 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr9:121,312,339
INFO 2026-06-08 08:57:06 MarkDuplicates Tracking 627013 as yet unmatched pairs. 23581 records in RAM.
INFO 2026-06-08 08:57:07 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr9:125,160,882
INFO 2026-06-08 08:57:07 MarkDuplicates Tracking 622737 as yet unmatched pairs. 19303 records in RAM.
INFO 2026-06-08 08:57:09 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr9:127,788,262
INFO 2026-06-08 08:57:09 MarkDuplicates Tracking 620891 as yet unmatched pairs. 17452 records in RAM.
INFO 2026-06-08 08:57:10 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr9:128,574,806
INFO 2026-06-08 08:57:10 MarkDuplicates Tracking 619068 as yet unmatched pairs. 15623 records in RAM.
INFO 2026-06-08 08:57:12 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr9:129,177,206
INFO 2026-06-08 08:57:12 MarkDuplicates Tracking 616972 as yet unmatched pairs. 13524 records in RAM.
INFO 2026-06-08 08:57:13 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr9:131,464,774
INFO 2026-06-08 08:57:13 MarkDuplicates Tracking 615876 as yet unmatched pairs. 12428 records in RAM.
INFO 2026-06-08 08:57:15 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr9:133,333,750
INFO 2026-06-08 08:57:15 MarkDuplicates Tracking 613311 as yet unmatched pairs. 9862 records in RAM.
INFO 2026-06-08 08:57:17 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr9:134,810,290
INFO 2026-06-08 08:57:17 MarkDuplicates Tracking 611361 as yet unmatched pairs. 7907 records in RAM.
INFO 2026-06-08 08:57:18 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr9:136,476,819
INFO 2026-06-08 08:57:18 MarkDuplicates Tracking 611316 as yet unmatched pairs. 7862 records in RAM.
INFO 2026-06-08 08:57:20 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr9:136,995,674
INFO 2026-06-08 08:57:20 MarkDuplicates Tracking 606575 as yet unmatched pairs. 3121 records in RAM.
INFO 2026-06-08 08:57:21 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr9:137,457,509
INFO 2026-06-08 08:57:21 MarkDuplicates Tracking 605388 as yet unmatched pairs. 1934 records in RAM.
INFO 2026-06-08 08:57:23 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr10:5,923,658
INFO 2026-06-08 08:57:23 MarkDuplicates Tracking 602491 as yet unmatched pairs. 31987 records in RAM.
INFO 2026-06-08 08:57:25 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr10:17,229,916
INFO 2026-06-08 08:57:25 MarkDuplicates Tracking 603235 as yet unmatched pairs. 32721 records in RAM.
INFO 2026-06-08 08:57:26 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr10:29,494,924
INFO 2026-06-08 08:57:26 MarkDuplicates Tracking 599557 as yet unmatched pairs. 29034 records in RAM.
INFO 2026-06-08 08:57:28 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr10:38,032,624
INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 597869 as yet unmatched pairs. 27334 records in RAM.
INFO 2026-06-08 08:57:29 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr10:46,016,622
INFO 2026-06-08 08:57:29 MarkDuplicates Tracking 596576 as yet unmatched pairs. 26041 records in RAM.
INFO 2026-06-08 08:57:30 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr10:60,084,654
INFO 2026-06-08 08:57:30 MarkDuplicates Tracking 594615 as yet unmatched pairs. 24079 records in RAM.
INFO 2026-06-08 08:57:32 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr10:70,529,473
INFO 2026-06-08 08:57:32 MarkDuplicates Tracking 593379 as yet unmatched pairs. 22842 records in RAM.
INFO 2026-06-08 08:57:34 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr10:73,499,140
INFO 2026-06-08 08:57:34 MarkDuplicates Tracking 591997 as yet unmatched pairs. 21458 records in RAM.
INFO 2026-06-08 08:57:35 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr10:77,828,915
INFO 2026-06-08 08:57:35 MarkDuplicates Tracking 589795 as yet unmatched pairs. 19256 records in RAM.
INFO 2026-06-08 08:57:37 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr10:79,559,407
INFO 2026-06-08 08:57:37 MarkDuplicates Tracking 599181 as yet unmatched pairs. 28641 records in RAM.
INFO 2026-06-08 08:57:38 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr10:80,169,028
INFO 2026-06-08 08:57:38 MarkDuplicates Tracking 586958 as yet unmatched pairs. 16418 records in RAM.
INFO 2026-06-08 08:57:40 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr10:89,339,541
INFO 2026-06-08 08:57:40 MarkDuplicates Tracking 585350 as yet unmatched pairs. 14805 records in RAM.
INFO 2026-06-08 08:57:41 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr10:96,057,901
INFO 2026-06-08 08:57:41 MarkDuplicates Tracking 583298 as yet unmatched pairs. 12746 records in RAM.
INFO 2026-06-08 08:57:43 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr10:100,496,275
INFO 2026-06-08 08:57:43 MarkDuplicates Tracking 581380 as yet unmatched pairs. 10819 records in RAM.
INFO 2026-06-08 08:57:46 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 2s. Last read position: chr10:102,402,338
INFO 2026-06-08 08:57:46 MarkDuplicates Tracking 579284 as yet unmatched pairs. 8722 records in RAM.
INFO 2026-06-08 08:57:47 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr10:110,985,665
INFO 2026-06-08 08:57:47 MarkDuplicates Tracking 577584 as yet unmatched pairs. 6997 records in RAM.
INFO 2026-06-08 08:57:49 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr10:119,898,925
INFO 2026-06-08 08:57:49 MarkDuplicates Tracking 576105 as yet unmatched pairs. 5517 records in RAM.
INFO 2026-06-08 08:57:50 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr10:122,589,075
INFO 2026-06-08 08:57:50 MarkDuplicates Tracking 580217 as yet unmatched pairs. 9629 records in RAM.
INFO 2026-06-08 08:57:52 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr10:122,618,025
INFO 2026-06-08 08:57:52 MarkDuplicates Tracking 576456 as yet unmatched pairs. 5868 records in RAM.
INFO 2026-06-08 08:57:53 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr10:131,963,923
INFO 2026-06-08 08:57:53 MarkDuplicates Tracking 572041 as yet unmatched pairs. 1452 records in RAM.
INFO 2026-06-08 08:57:56 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 2s. Last read position: chr11:308,365
INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 575990 as yet unmatched pairs. 73678 records in RAM.
INFO 2026-06-08 08:57:58 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr11:502,040
INFO 2026-06-08 08:57:58 MarkDuplicates Tracking 569265 as yet unmatched pairs. 66952 records in RAM.
INFO 2026-06-08 08:57:59 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr11:830,969
INFO 2026-06-08 08:57:59 MarkDuplicates Tracking 565773 as yet unmatched pairs. 63454 records in RAM.
INFO 2026-06-08 08:58:01 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:1,245,847
INFO 2026-06-08 08:58:01 MarkDuplicates Tracking 564505 as yet unmatched pairs. 62186 records in RAM.
INFO 2026-06-08 08:58:02 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr11:1,757,323
INFO 2026-06-08 08:58:02 MarkDuplicates Tracking 566828 as yet unmatched pairs. 64505 records in RAM.
INFO 2026-06-08 08:58:04 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:2,969,738
INFO 2026-06-08 08:58:04 MarkDuplicates Tracking 560775 as yet unmatched pairs. 58451 records in RAM.
INFO 2026-06-08 08:58:05 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr11:6,614,952
INFO 2026-06-08 08:58:05 MarkDuplicates Tracking 560091 as yet unmatched pairs. 57762 records in RAM.
INFO 2026-06-08 08:58:07 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:10,493,484
INFO 2026-06-08 08:58:07 MarkDuplicates Tracking 556635 as yet unmatched pairs. 54303 records in RAM.
INFO 2026-06-08 08:58:09 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr11:16,754,945
INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 555456 as yet unmatched pairs. 53124 records in RAM.
INFO 2026-06-08 08:58:10 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:33,713,324
INFO 2026-06-08 08:58:10 MarkDuplicates Tracking 557101 as yet unmatched pairs. 54768 records in RAM.
INFO 2026-06-08 08:58:12 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:45,811,234
INFO 2026-06-08 08:58:12 MarkDuplicates Tracking 551612 as yet unmatched pairs. 49279 records in RAM.
INFO 2026-06-08 08:58:13 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr11:47,235,286
INFO 2026-06-08 08:58:13 MarkDuplicates Tracking 549911 as yet unmatched pairs. 47576 records in RAM.
INFO 2026-06-08 08:58:15 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:57,312,665
INFO 2026-06-08 08:58:15 MarkDuplicates Tracking 548993 as yet unmatched pairs. 46655 records in RAM.
INFO 2026-06-08 08:58:17 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:58,579,266
INFO 2026-06-08 08:58:17 MarkDuplicates Tracking 546592 as yet unmatched pairs. 44254 records in RAM.
INFO 2026-06-08 08:58:18 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr11:61,743,929
INFO 2026-06-08 08:58:18 MarkDuplicates Tracking 544486 as yet unmatched pairs. 42144 records in RAM.
INFO 2026-06-08 08:58:20 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:62,522,240
INFO 2026-06-08 08:58:20 MarkDuplicates Tracking 545612 as yet unmatched pairs. 43267 records in RAM.
INFO 2026-06-08 08:58:21 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr11:62,532,411
INFO 2026-06-08 08:58:21 MarkDuplicates Tracking 543040 as yet unmatched pairs. 40695 records in RAM.
INFO 2026-06-08 08:58:23 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:62,715,884
INFO 2026-06-08 08:58:23 MarkDuplicates Tracking 540119 as yet unmatched pairs. 37770 records in RAM.
INFO 2026-06-08 08:58:24 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:64,244,943
INFO 2026-06-08 08:58:24 MarkDuplicates Tracking 540059 as yet unmatched pairs. 37705 records in RAM.
INFO 2026-06-08 08:58:26 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:64,911,125
INFO 2026-06-08 08:58:26 MarkDuplicates Tracking 536075 as yet unmatched pairs. 33720 records in RAM.
INFO 2026-06-08 08:58:28 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr11:65,539,771
INFO 2026-06-08 08:58:28 MarkDuplicates Tracking 537024 as yet unmatched pairs. 34649 records in RAM.
INFO 2026-06-08 08:58:29 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:65,634,573
INFO 2026-06-08 08:58:29 MarkDuplicates Tracking 531256 as yet unmatched pairs. 28873 records in RAM.
INFO 2026-06-08 08:58:31 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr11:66,070,540
INFO 2026-06-08 08:58:31 MarkDuplicates Tracking 529167 as yet unmatched pairs. 26784 records in RAM.
INFO 2026-06-08 08:58:32 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:67,181,391
INFO 2026-06-08 08:58:32 MarkDuplicates Tracking 526894 as yet unmatched pairs. 24510 records in RAM.
INFO 2026-06-08 08:58:34 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:67,586,402
INFO 2026-06-08 08:58:34 MarkDuplicates Tracking 528026 as yet unmatched pairs. 25634 records in RAM.
INFO 2026-06-08 08:58:36 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr11:68,892,228
INFO 2026-06-08 08:58:36 MarkDuplicates Tracking 522761 as yet unmatched pairs. 20362 records in RAM.
INFO 2026-06-08 08:58:37 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:72,014,229
INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 521572 as yet unmatched pairs. 19151 records in RAM.
INFO 2026-06-08 08:58:39 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:73,309,000
INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 519652 as yet unmatched pairs. 17216 records in RAM.
INFO 2026-06-08 08:58:40 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:75,566,381
INFO 2026-06-08 08:58:40 MarkDuplicates Tracking 518034 as yet unmatched pairs. 15589 records in RAM.
INFO 2026-06-08 08:58:42 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:86,068,658
INFO 2026-06-08 08:58:42 MarkDuplicates Tracking 515344 as yet unmatched pairs. 12898 records in RAM.
INFO 2026-06-08 08:58:43 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:102,223,648
INFO 2026-06-08 08:58:43 MarkDuplicates Tracking 515843 as yet unmatched pairs. 13395 records in RAM.
INFO 2026-06-08 08:58:45 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:114,063,301
INFO 2026-06-08 08:58:45 MarkDuplicates Tracking 514636 as yet unmatched pairs. 12185 records in RAM.
INFO 2026-06-08 08:58:46 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr11:117,387,297
INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 509683 as yet unmatched pairs. 7227 records in RAM.
INFO 2026-06-08 08:58:48 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:118,896,995
INFO 2026-06-08 08:58:48 MarkDuplicates Tracking 508904 as yet unmatched pairs. 6448 records in RAM.
INFO 2026-06-08 08:58:49 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr11:120,451,596
INFO 2026-06-08 08:58:49 MarkDuplicates Tracking 506994 as yet unmatched pairs. 4527 records in RAM.
INFO 2026-06-08 08:58:51 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr11:126,304,117
INFO 2026-06-08 08:58:51 MarkDuplicates Tracking 504879 as yet unmatched pairs. 2406 records in RAM.
INFO 2026-06-08 08:58:53 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr11:130,915,829
INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 503374 as yet unmatched pairs. 901 records in RAM.
INFO 2026-06-08 08:58:54 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr12:4,276,065
INFO 2026-06-08 08:58:54 MarkDuplicates Tracking 501692 as yet unmatched pairs. 46948 records in RAM.
INFO 2026-06-08 08:58:56 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr12:6,349,342
INFO 2026-06-08 08:58:56 MarkDuplicates Tracking 500429 as yet unmatched pairs. 45682 records in RAM.
INFO 2026-06-08 08:58:58 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr12:6,935,617
INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 498133 as yet unmatched pairs. 43386 records in RAM.
INFO 2026-06-08 08:58:59 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr12:7,495,136
INFO 2026-06-08 08:58:59 MarkDuplicates Tracking 498256 as yet unmatched pairs. 43497 records in RAM.
INFO 2026-06-08 08:59:01 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr12:9,091,406
INFO 2026-06-08 08:59:01 MarkDuplicates Tracking 497424 as yet unmatched pairs. 42650 records in RAM.
INFO 2026-06-08 08:59:03 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr12:11,869,797
INFO 2026-06-08 08:59:03 MarkDuplicates Tracking 494887 as yet unmatched pairs. 40101 records in RAM.
INFO 2026-06-08 08:59:04 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr12:25,794,025
INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 491378 as yet unmatched pairs. 36588 records in RAM.
INFO 2026-06-08 08:59:05 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr12:45,924,810
INFO 2026-06-08 08:59:05 MarkDuplicates Tracking 490113 as yet unmatched pairs. 35295 records in RAM.
INFO 2026-06-08 08:59:07 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr12:49,027,887
INFO 2026-06-08 08:59:07 MarkDuplicates Tracking 489450 as yet unmatched pairs. 34632 records in RAM.
INFO 2026-06-08 08:59:09 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr12:49,272,426
INFO 2026-06-08 08:59:09 MarkDuplicates Tracking 487124 as yet unmatched pairs. 32294 records in RAM.
INFO 2026-06-08 08:59:10 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr12:51,246,767
INFO 2026-06-08 08:59:10 MarkDuplicates Tracking 484895 as yet unmatched pairs. 30065 records in RAM.
INFO 2026-06-08 08:59:12 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr12:53,033,954
INFO 2026-06-08 08:59:12 MarkDuplicates Tracking 483243 as yet unmatched pairs. 28396 records in RAM.
INFO 2026-06-08 08:59:13 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr12:53,484,035
INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 481386 as yet unmatched pairs. 26537 records in RAM.
INFO 2026-06-08 08:59:15 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr12:55,725,611
INFO 2026-06-08 08:59:15 MarkDuplicates Tracking 481784 as yet unmatched pairs. 26932 records in RAM.
INFO 2026-06-08 08:59:17 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr12:56,160,043
INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 480982 as yet unmatched pairs. 26129 records in RAM.
INFO 2026-06-08 08:59:18 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr12:56,712,440
INFO 2026-06-08 08:59:18 MarkDuplicates Tracking 477433 as yet unmatched pairs. 22580 records in RAM.
INFO 2026-06-08 08:59:20 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr12:57,106,527
INFO 2026-06-08 08:59:20 MarkDuplicates Tracking 479078 as yet unmatched pairs. 24225 records in RAM.
INFO 2026-06-08 08:59:22 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr12:57,211,254
INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 476142 as yet unmatched pairs. 21289 records in RAM.
INFO 2026-06-08 08:59:24 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr12:57,823,554
INFO 2026-06-08 08:59:24 MarkDuplicates Tracking 473433 as yet unmatched pairs. 18580 records in RAM.
INFO 2026-06-08 08:59:25 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr12:68,824,369
INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 471761 as yet unmatched pairs. 16907 records in RAM.
INFO 2026-06-08 08:59:27 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr12:88,532,461
INFO 2026-06-08 08:59:27 MarkDuplicates Tracking 469094 as yet unmatched pairs. 14239 records in RAM.
INFO 2026-06-08 08:59:29 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr12:98,546,435
INFO 2026-06-08 08:59:29 MarkDuplicates Tracking 467441 as yet unmatched pairs. 12572 records in RAM.
INFO 2026-06-08 08:59:30 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:108,623,543
INFO 2026-06-08 08:59:30 MarkDuplicates Tracking 466251 as yet unmatched pairs. 11376 records in RAM.
INFO 2026-06-08 08:59:32 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr12:112,022,149
INFO 2026-06-08 08:59:32 MarkDuplicates Tracking 466037 as yet unmatched pairs. 11148 records in RAM.
INFO 2026-06-08 08:59:33 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr12:115,991,599
INFO 2026-06-08 08:59:33 MarkDuplicates Tracking 462357 as yet unmatched pairs. 7466 records in RAM.
INFO 2026-06-08 08:59:35 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr12:121,240,783
INFO 2026-06-08 08:59:35 MarkDuplicates Tracking 461048 as yet unmatched pairs. 6145 records in RAM.
INFO 2026-06-08 08:59:37 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr12:123,712,591
INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 458678 as yet unmatched pairs. 3762 records in RAM.
INFO 2026-06-08 08:59:38 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:131,799,490
INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 456981 as yet unmatched pairs. 2061 records in RAM.
INFO 2026-06-08 08:59:40 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr13:20,005,151
INFO 2026-06-08 08:59:40 MarkDuplicates Tracking 455517 as yet unmatched pairs. 14873 records in RAM.
INFO 2026-06-08 08:59:41 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr13:28,703,991
INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 453310 as yet unmatched pairs. 12666 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr13:42,168,453
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 451384 as yet unmatched pairs. 10740 records in RAM.
INFO 2026-06-08 08:59:45 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr13:49,506,691
INFO 2026-06-08 08:59:45 MarkDuplicates Tracking 450062 as yet unmatched pairs. 9416 records in RAM.
INFO 2026-06-08 08:59:46 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr13:77,185,883
INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 448190 as yet unmatched pairs. 7544 records in RAM.
INFO 2026-06-08 08:59:48 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr13:99,238,442
INFO 2026-06-08 08:59:48 MarkDuplicates Tracking 446344 as yet unmatched pairs. 5696 records in RAM.
INFO 2026-06-08 08:59:49 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr13:110,211,909
INFO 2026-06-08 08:59:49 MarkDuplicates Tracking 445147 as yet unmatched pairs. 4498 records in RAM.
INFO 2026-06-08 08:59:51 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr13:112,854,347
INFO 2026-06-08 08:59:51 MarkDuplicates Tracking 444500 as yet unmatched pairs. 3846 records in RAM.
INFO 2026-06-08 08:59:53 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 2s. Last read position: chr14:20,459,219
INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 440865 as yet unmatched pairs. 45249 records in RAM.
INFO 2026-06-08 08:59:55 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr14:22,844,718
INFO 2026-06-08 08:59:55 MarkDuplicates Tracking 438955 as yet unmatched pairs. 43338 records in RAM.
INFO 2026-06-08 08:59:56 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr14:23,965,779
INFO 2026-06-08 08:59:56 MarkDuplicates Tracking 437101 as yet unmatched pairs. 41484 records in RAM.
INFO 2026-06-08 08:59:58 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr14:24,376,026
INFO 2026-06-08 08:59:58 MarkDuplicates Tracking 435227 as yet unmatched pairs. 39604 records in RAM.
INFO 2026-06-08 09:00:00 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr14:35,404,552
INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 435201 as yet unmatched pairs. 39566 records in RAM.
INFO 2026-06-08 09:00:01 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr14:49,789,145
INFO 2026-06-08 09:00:01 MarkDuplicates Tracking 431071 as yet unmatched pairs. 35409 records in RAM.
INFO 2026-06-08 09:00:03 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr14:58,257,806
INFO 2026-06-08 09:00:03 MarkDuplicates Tracking 430194 as yet unmatched pairs. 34531 records in RAM.
INFO 2026-06-08 09:00:05 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr14:64,540,893
INFO 2026-06-08 09:00:05 MarkDuplicates Tracking 427965 as yet unmatched pairs. 32277 records in RAM.
INFO 2026-06-08 09:00:06 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr14:69,709,054
INFO 2026-06-08 09:00:06 MarkDuplicates Tracking 426660 as yet unmatched pairs. 30969 records in RAM.
INFO 2026-06-08 09:00:08 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr14:74,064,820
INFO 2026-06-08 09:00:08 MarkDuplicates Tracking 424325 as yet unmatched pairs. 28622 records in RAM.
INFO 2026-06-08 09:00:10 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr14:74,585,874
INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 426191 as yet unmatched pairs. 30488 records in RAM.
INFO 2026-06-08 09:00:11 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr14:77,301,318
INFO 2026-06-08 09:00:11 MarkDuplicates Tracking 420767 as yet unmatched pairs. 25064 records in RAM.
INFO 2026-06-08 09:00:13 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr14:92,577,461
INFO 2026-06-08 09:00:13 MarkDuplicates Tracking 419086 as yet unmatched pairs. 23383 records in RAM.
INFO 2026-06-08 09:00:15 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr14:94,383,057
INFO 2026-06-08 09:00:15 MarkDuplicates Tracking 421090 as yet unmatched pairs. 25385 records in RAM.
INFO 2026-06-08 09:00:16 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr14:101,983,498
INFO 2026-06-08 09:00:16 MarkDuplicates Tracking 415939 as yet unmatched pairs. 20233 records in RAM.
INFO 2026-06-08 09:00:18 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr14:103,012,176
INFO 2026-06-08 09:00:18 MarkDuplicates Tracking 413778 as yet unmatched pairs. 18072 records in RAM.
INFO 2026-06-08 09:00:20 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr14:104,882,776
INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 412819 as yet unmatched pairs. 17113 records in RAM.
INFO 2026-06-08 09:00:21 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr14:105,384,607
INFO 2026-06-08 09:00:21 MarkDuplicates Tracking 409798 as yet unmatched pairs. 14085 records in RAM.
INFO 2026-06-08 09:00:23 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr14:105,625,878
INFO 2026-06-08 09:00:23 MarkDuplicates Tracking 412591 as yet unmatched pairs. 16878 records in RAM.
INFO 2026-06-08 09:00:24 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,159
INFO 2026-06-08 09:00:24 MarkDuplicates Tracking 462977 as yet unmatched pairs. 67259 records in RAM.
INFO 2026-06-08 09:00:27 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 2s. Last read position: chr14:105,707,369
INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 497667 as yet unmatched pairs. 101948 records in RAM.
INFO 2026-06-08 09:00:28 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,888
INFO 2026-06-08 09:00:28 MarkDuplicates Tracking 469912 as yet unmatched pairs. 74183 records in RAM.
INFO 2026-06-08 09:00:30 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr14:105,708,499
INFO 2026-06-08 09:00:30 MarkDuplicates Tracking 461123 as yet unmatched pairs. 65394 records in RAM.
INFO 2026-06-08 09:00:32 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,650
INFO 2026-06-08 09:00:32 MarkDuplicates Tracking 437188 as yet unmatched pairs. 41454 records in RAM.
INFO 2026-06-08 09:00:33 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,356
INFO 2026-06-08 09:00:33 MarkDuplicates Tracking 423049 as yet unmatched pairs. 27315 records in RAM.
INFO 2026-06-08 09:00:35 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr14:105,769,659
INFO 2026-06-08 09:00:35 MarkDuplicates Tracking 404443 as yet unmatched pairs. 8699 records in RAM.
INFO 2026-06-08 09:00:36 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr14:105,841,161
INFO 2026-06-08 09:00:36 MarkDuplicates Tracking 398221 as yet unmatched pairs. 2475 records in RAM.
INFO 2026-06-08 09:00:38 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr14:105,863,198
INFO 2026-06-08 09:00:38 MarkDuplicates Tracking 396276 as yet unmatched pairs. 530 records in RAM.
INFO 2026-06-08 09:00:40 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 2s. Last read position: chr15:28,255,972
INFO 2026-06-08 09:00:40 MarkDuplicates Tracking 395126 as yet unmatched pairs. 29695 records in RAM.
INFO 2026-06-08 09:00:41 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr15:34,495,218
INFO 2026-06-08 09:00:41 MarkDuplicates Tracking 393007 as yet unmatched pairs. 27576 records in RAM.
INFO 2026-06-08 09:00:43 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr15:40,472,199
INFO 2026-06-08 09:00:43 MarkDuplicates Tracking 391634 as yet unmatched pairs. 26203 records in RAM.
INFO 2026-06-08 09:00:45 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr15:41,835,166
INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 390335 as yet unmatched pairs. 24899 records in RAM.
INFO 2026-06-08 09:00:46 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr15:43,677,515
INFO 2026-06-08 09:00:46 MarkDuplicates Tracking 388046 as yet unmatched pairs. 22610 records in RAM.
INFO 2026-06-08 09:00:48 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr15:45,171,852
INFO 2026-06-08 09:00:48 MarkDuplicates Tracking 386745 as yet unmatched pairs. 21309 records in RAM.
INFO 2026-06-08 09:00:49 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr15:52,610,239
INFO 2026-06-08 09:00:49 MarkDuplicates Tracking 385232 as yet unmatched pairs. 19796 records in RAM.
INFO 2026-06-08 09:00:51 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr15:61,881,755
INFO 2026-06-08 09:00:51 MarkDuplicates Tracking 384095 as yet unmatched pairs. 18657 records in RAM.
INFO 2026-06-08 09:00:53 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr15:64,674,148
INFO 2026-06-08 09:00:53 MarkDuplicates Tracking 381717 as yet unmatched pairs. 16274 records in RAM.
INFO 2026-06-08 09:00:54 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr15:69,455,175
INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 389170 as yet unmatched pairs. 23719 records in RAM.
INFO 2026-06-08 09:00:56 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr15:73,926,786
INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 378434 as yet unmatched pairs. 12980 records in RAM.
INFO 2026-06-08 09:00:57 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr15:74,906,286
INFO 2026-06-08 09:00:57 MarkDuplicates Tracking 376611 as yet unmatched pairs. 11157 records in RAM.
INFO 2026-06-08 09:00:59 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr15:77,070,904
INFO 2026-06-08 09:00:59 MarkDuplicates Tracking 376014 as yet unmatched pairs. 10560 records in RAM.
INFO 2026-06-08 09:01:00 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr15:82,434,528
INFO 2026-06-08 09:01:00 MarkDuplicates Tracking 372243 as yet unmatched pairs. 6785 records in RAM.
INFO 2026-06-08 09:01:02 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr15:85,581,443
INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 372599 as yet unmatched pairs. 7141 records in RAM.
INFO 2026-06-08 09:01:05 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 3s. Last read position: chr15:89,806,149
INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 369413 as yet unmatched pairs. 3955 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr15:90,904,203
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 368035 as yet unmatched pairs. 2564 records in RAM.
INFO 2026-06-08 09:01:09 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr15:101,972,061
INFO 2026-06-08 09:01:09 MarkDuplicates Tracking 365844 as yet unmatched pairs. 368 records in RAM.
INFO 2026-06-08 09:01:11 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 2s. Last read position: chr16:635,295
INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 364194 as yet unmatched pairs. 60029 records in RAM.
INFO 2026-06-08 09:01:12 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr16:1,362,903
INFO 2026-06-08 09:01:12 MarkDuplicates Tracking 361668 as yet unmatched pairs. 57502 records in RAM.
INFO 2026-06-08 09:01:14 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr16:2,002,532
INFO 2026-06-08 09:01:14 MarkDuplicates Tracking 358829 as yet unmatched pairs. 54663 records in RAM.
INFO 2026-06-08 09:01:15 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr16:2,276,600
INFO 2026-06-08 09:01:15 MarkDuplicates Tracking 356703 as yet unmatched pairs. 52537 records in RAM.
INFO 2026-06-08 09:01:17 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr16:2,765,255
INFO 2026-06-08 09:01:17 MarkDuplicates Tracking 356163 as yet unmatched pairs. 51997 records in RAM.
INFO 2026-06-08 09:01:19 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr16:3,549,685
INFO 2026-06-08 09:01:19 MarkDuplicates Tracking 352740 as yet unmatched pairs. 48574 records in RAM.
INFO 2026-06-08 09:01:21 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr16:4,765,848
INFO 2026-06-08 09:01:21 MarkDuplicates Tracking 350553 as yet unmatched pairs. 46381 records in RAM.
INFO 2026-06-08 09:01:23 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 2s. Last read position: chr16:10,907,571
INFO 2026-06-08 09:01:23 MarkDuplicates Tracking 349977 as yet unmatched pairs. 45798 records in RAM.
INFO 2026-06-08 09:01:25 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr16:14,865,104
INFO 2026-06-08 09:01:25 MarkDuplicates Tracking 347619 as yet unmatched pairs. 43440 records in RAM.
INFO 2026-06-08 09:01:26 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr16:15,718,392
INFO 2026-06-08 09:01:26 MarkDuplicates Tracking 346546 as yet unmatched pairs. 42367 records in RAM.
INFO 2026-06-08 09:01:27 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr16:16,329,389
INFO 2026-06-08 09:01:27 MarkDuplicates Tracking 344927 as yet unmatched pairs. 40748 records in RAM.
INFO 2026-06-08 09:01:29 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr16:18,394,773
INFO 2026-06-08 09:01:29 MarkDuplicates Tracking 343941 as yet unmatched pairs. 39759 records in RAM.
INFO 2026-06-08 09:01:30 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr16:19,610,323
INFO 2026-06-08 09:01:30 MarkDuplicates Tracking 342488 as yet unmatched pairs. 38306 records in RAM.
INFO 2026-06-08 09:01:31 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr16:21,835,802
INFO 2026-06-08 09:01:31 MarkDuplicates Tracking 343723 as yet unmatched pairs. 39541 records in RAM.
INFO 2026-06-08 09:01:33 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,117
INFO 2026-06-08 09:01:33 MarkDuplicates Tracking 341373 as yet unmatched pairs. 37190 records in RAM.
INFO 2026-06-08 09:01:34 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr16:27,469,519
INFO 2026-06-08 09:01:34 MarkDuplicates Tracking 339750 as yet unmatched pairs. 35566 records in RAM.
INFO 2026-06-08 09:01:35 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr16:28,833,249
INFO 2026-06-08 09:01:35 MarkDuplicates Tracking 338756 as yet unmatched pairs. 34572 records in RAM.
INFO 2026-06-08 09:01:37 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr16:29,491,652
INFO 2026-06-08 09:01:37 MarkDuplicates Tracking 337862 as yet unmatched pairs. 33678 records in RAM.
INFO 2026-06-08 09:01:39 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:29,963,403
INFO 2026-06-08 09:01:39 MarkDuplicates Tracking 336397 as yet unmatched pairs. 32204 records in RAM.
INFO 2026-06-08 09:01:40 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr16:30,231,484
INFO 2026-06-08 09:01:40 MarkDuplicates Tracking 333761 as yet unmatched pairs. 29568 records in RAM.
INFO 2026-06-08 09:01:41 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:30,724,716
INFO 2026-06-08 09:01:41 MarkDuplicates Tracking 332561 as yet unmatched pairs. 28359 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr16:31,182,610
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 334008 as yet unmatched pairs. 29803 records in RAM.
INFO 2026-06-08 09:01:45 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 2s. Last read position: chr16:50,153,830
INFO 2026-06-08 09:01:45 MarkDuplicates Tracking 327895 as yet unmatched pairs. 23690 records in RAM.
INFO 2026-06-08 09:01:48 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 3s. Last read position: chr16:56,407,978
INFO 2026-06-08 09:01:48 MarkDuplicates Tracking 326675 as yet unmatched pairs. 22470 records in RAM.
INFO 2026-06-08 09:01:50 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr16:57,474,973
INFO 2026-06-08 09:01:50 MarkDuplicates Tracking 324300 as yet unmatched pairs. 20087 records in RAM.
INFO 2026-06-08 09:01:52 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr16:66,541,931
INFO 2026-06-08 09:01:52 MarkDuplicates Tracking 322363 as yet unmatched pairs. 18150 records in RAM.
INFO 2026-06-08 09:01:54 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr16:67,657,761
INFO 2026-06-08 09:01:54 MarkDuplicates Tracking 319818 as yet unmatched pairs. 15605 records in RAM.
INFO 2026-06-08 09:01:56 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:69,155,881
INFO 2026-06-08 09:01:56 MarkDuplicates Tracking 317657 as yet unmatched pairs. 13443 records in RAM.
INFO 2026-06-08 09:01:57 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr16:70,784,827
INFO 2026-06-08 09:01:57 MarkDuplicates Tracking 316272 as yet unmatched pairs. 12057 records in RAM.
INFO 2026-06-08 09:01:59 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr16:72,060,457
INFO 2026-06-08 09:01:59 MarkDuplicates Tracking 322057 as yet unmatched pairs. 17842 records in RAM.
INFO 2026-06-08 09:02:00 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr16:75,242,860
INFO 2026-06-08 09:02:00 MarkDuplicates Tracking 314210 as yet unmatched pairs. 9994 records in RAM.
INFO 2026-06-08 09:02:02 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr16:84,838,462
INFO 2026-06-08 09:02:02 MarkDuplicates Tracking 311794 as yet unmatched pairs. 7575 records in RAM.
INFO 2026-06-08 09:02:03 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr16:88,643,382
INFO 2026-06-08 09:02:03 MarkDuplicates Tracking 312368 as yet unmatched pairs. 8149 records in RAM.
INFO 2026-06-08 09:02:05 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr16:89,198,264
INFO 2026-06-08 09:02:05 MarkDuplicates Tracking 311051 as yet unmatched pairs. 6832 records in RAM.
INFO 2026-06-08 09:02:07 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr16:89,752,176
INFO 2026-06-08 09:02:07 MarkDuplicates Tracking 304876 as yet unmatched pairs. 657 records in RAM.
INFO 2026-06-08 09:02:09 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 2s. Last read position: chr17:1,483,015
INFO 2026-06-08 09:02:09 MarkDuplicates Tracking 303639 as yet unmatched pairs. 84796 records in RAM.
INFO 2026-06-08 09:02:11 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr17:2,068,909
INFO 2026-06-08 09:02:11 MarkDuplicates Tracking 301104 as yet unmatched pairs. 82261 records in RAM.
INFO 2026-06-08 09:02:12 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr17:4,550,102
INFO 2026-06-08 09:02:12 MarkDuplicates Tracking 299619 as yet unmatched pairs. 80776 records in RAM.
INFO 2026-06-08 09:02:14 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr17:5,433,133
INFO 2026-06-08 09:02:14 MarkDuplicates Tracking 297462 as yet unmatched pairs. 78619 records in RAM.
INFO 2026-06-08 09:02:16 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr17:7,343,885
INFO 2026-06-08 09:02:16 MarkDuplicates Tracking 295588 as yet unmatched pairs. 76743 records in RAM.
INFO 2026-06-08 09:02:17 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr17:7,580,232
INFO 2026-06-08 09:02:17 MarkDuplicates Tracking 294969 as yet unmatched pairs. 76124 records in RAM.
INFO 2026-06-08 09:02:19 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr17:8,143,360
INFO 2026-06-08 09:02:19 MarkDuplicates Tracking 292638 as yet unmatched pairs. 73792 records in RAM.
INFO 2026-06-08 09:02:21 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr17:12,980,073
INFO 2026-06-08 09:02:21 MarkDuplicates Tracking 290272 as yet unmatched pairs. 71424 records in RAM.
INFO 2026-06-08 09:02:22 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr17:17,173,841
INFO 2026-06-08 09:02:22 MarkDuplicates Tracking 290011 as yet unmatched pairs. 71163 records in RAM.
INFO 2026-06-08 09:02:24 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 2s. Last read position: chr17:18,253,571
INFO 2026-06-08 09:02:24 MarkDuplicates Tracking 287171 as yet unmatched pairs. 68323 records in RAM.
INFO 2026-06-08 09:02:26 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr17:27,301,811
INFO 2026-06-08 09:02:26 MarkDuplicates Tracking 287621 as yet unmatched pairs. 68765 records in RAM.
INFO 2026-06-08 09:02:28 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr17:28,720,019
INFO 2026-06-08 09:02:28 MarkDuplicates Tracking 283221 as yet unmatched pairs. 64355 records in RAM.
INFO 2026-06-08 09:02:29 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr17:30,443,829
INFO 2026-06-08 09:02:29 MarkDuplicates Tracking 281328 as yet unmatched pairs. 62457 records in RAM.
INFO 2026-06-08 09:02:31 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 2s. Last read position: chr17:35,265,475
INFO 2026-06-08 09:02:31 MarkDuplicates Tracking 279492 as yet unmatched pairs. 60619 records in RAM.
INFO 2026-06-08 09:02:33 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr17:37,553,087
INFO 2026-06-08 09:02:33 MarkDuplicates Tracking 277824 as yet unmatched pairs. 58949 records in RAM.
INFO 2026-06-08 09:02:34 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr17:38,850,117
INFO 2026-06-08 09:02:34 MarkDuplicates Tracking 279927 as yet unmatched pairs. 61052 records in RAM.
INFO 2026-06-08 09:02:36 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr17:39,712,117
INFO 2026-06-08 09:02:36 MarkDuplicates Tracking 277060 as yet unmatched pairs. 58182 records in RAM.
INFO 2026-06-08 09:02:38 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr17:40,093,158
INFO 2026-06-08 09:02:38 MarkDuplicates Tracking 273186 as yet unmatched pairs. 54308 records in RAM.
INFO 2026-06-08 09:02:39 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr17:41,887,640
INFO 2026-06-08 09:02:39 MarkDuplicates Tracking 270471 as yet unmatched pairs. 51588 records in RAM.
INFO 2026-06-08 09:02:41 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr17:42,585,145
INFO 2026-06-08 09:02:41 MarkDuplicates Tracking 269351 as yet unmatched pairs. 50468 records in RAM.
INFO 2026-06-08 09:02:42 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr17:44,091,389
INFO 2026-06-08 09:02:42 MarkDuplicates Tracking 267093 as yet unmatched pairs. 48210 records in RAM.
INFO 2026-06-08 09:02:44 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr17:45,241,933
INFO 2026-06-08 09:02:44 MarkDuplicates Tracking 264609 as yet unmatched pairs. 45722 records in RAM.
INFO 2026-06-08 09:02:45 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr17:47,283,498
INFO 2026-06-08 09:02:45 MarkDuplicates Tracking 264335 as yet unmatched pairs. 45446 records in RAM.
INFO 2026-06-08 09:02:47 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr17:49,707,741
INFO 2026-06-08 09:02:47 MarkDuplicates Tracking 262262 as yet unmatched pairs. 43373 records in RAM.
INFO 2026-06-08 09:02:49 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,875
INFO 2026-06-08 09:02:49 MarkDuplicates Tracking 288556 as yet unmatched pairs. 69667 records in RAM.
INFO 2026-06-08 09:02:51 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,005
INFO 2026-06-08 09:02:51 MarkDuplicates Tracking 279901 as yet unmatched pairs. 61012 records in RAM.
INFO 2026-06-08 09:02:54 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 2s. Last read position: chr17:50,193,029
INFO 2026-06-08 09:02:54 MarkDuplicates Tracking 288107 as yet unmatched pairs. 69218 records in RAM.
INFO 2026-06-08 09:02:55 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,949
INFO 2026-06-08 09:02:55 MarkDuplicates Tracking 281113 as yet unmatched pairs. 62224 records in RAM.
INFO 2026-06-08 09:02:57 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,555
INFO 2026-06-08 09:02:57 MarkDuplicates Tracking 260327 as yet unmatched pairs. 41438 records in RAM.
INFO 2026-06-08 09:02:59 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chr17:50,984,958
INFO 2026-06-08 09:02:59 MarkDuplicates Tracking 249772 as yet unmatched pairs. 30882 records in RAM.
INFO 2026-06-08 09:03:00 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 1s. Last read position: chr17:59,602,585
INFO 2026-06-08 09:03:00 MarkDuplicates Tracking 247896 as yet unmatched pairs. 29004 records in RAM.
INFO 2026-06-08 09:03:02 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 1s. Last read position: chr17:61,457,554
INFO 2026-06-08 09:03:02 MarkDuplicates Tracking 245885 as yet unmatched pairs. 26993 records in RAM.
INFO 2026-06-08 09:03:03 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr17:63,832,829
INFO 2026-06-08 09:03:03 MarkDuplicates Tracking 244441 as yet unmatched pairs. 25549 records in RAM.
INFO 2026-06-08 09:03:05 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 1s. Last read position: chr17:64,822,374
INFO 2026-06-08 09:03:05 MarkDuplicates Tracking 243447 as yet unmatched pairs. 24555 records in RAM.
INFO 2026-06-08 09:03:06 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr17:68,543,662
INFO 2026-06-08 09:03:06 MarkDuplicates Tracking 241147 as yet unmatched pairs. 22255 records in RAM.
INFO 2026-06-08 09:03:08 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 1s. Last read position: chr17:75,239,901
INFO 2026-06-08 09:03:08 MarkDuplicates Tracking 239499 as yet unmatched pairs. 20607 records in RAM.
INFO 2026-06-08 09:03:10 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 1s. Last read position: chr17:75,739,679
INFO 2026-06-08 09:03:10 MarkDuplicates Tracking 237172 as yet unmatched pairs. 18280 records in RAM.
INFO 2026-06-08 09:03:11 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 1s. Last read position: chr17:76,265,615
INFO 2026-06-08 09:03:11 MarkDuplicates Tracking 235131 as yet unmatched pairs. 16237 records in RAM.
INFO 2026-06-08 09:03:13 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 1s. Last read position: chr17:78,125,776
INFO 2026-06-08 09:03:13 MarkDuplicates Tracking 235010 as yet unmatched pairs. 16116 records in RAM.
INFO 2026-06-08 09:03:15 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 2s. Last read position: chr17:78,972,998
INFO 2026-06-08 09:03:15 MarkDuplicates Tracking 239386 as yet unmatched pairs. 20492 records in RAM.
INFO 2026-06-08 09:03:16 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 1s. Last read position: chr17:80,298,326
INFO 2026-06-08 09:03:16 MarkDuplicates Tracking 230223 as yet unmatched pairs. 11329 records in RAM.
INFO 2026-06-08 09:03:18 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 1s. Last read position: chr17:81,121,567
INFO 2026-06-08 09:03:18 MarkDuplicates Tracking 227335 as yet unmatched pairs. 8440 records in RAM.
INFO 2026-06-08 09:03:20 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 2s. Last read position: chr17:81,701,635
INFO 2026-06-08 09:03:20 MarkDuplicates Tracking 225019 as yet unmatched pairs. 6124 records in RAM.
INFO 2026-06-08 09:05:29 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 128s. Last read position: chr17:82,061,245
INFO 2026-06-08 09:05:29 MarkDuplicates Tracking 223523 as yet unmatched pairs. 4627 records in RAM.
INFO 2026-06-08 09:05:30 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr17:82,443,422
INFO 2026-06-08 09:05:30 MarkDuplicates Tracking 222883 as yet unmatched pairs. 3987 records in RAM.
INFO 2026-06-08 09:05:32 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr18:6,239,794
INFO 2026-06-08 09:05:32 MarkDuplicates Tracking 218109 as yet unmatched pairs. 8173 records in RAM.
INFO 2026-06-08 09:05:34 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr18:23,001,611
INFO 2026-06-08 09:05:34 MarkDuplicates Tracking 216495 as yet unmatched pairs. 6555 records in RAM.
INFO 2026-06-08 09:05:35 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr18:45,922,341
INFO 2026-06-08 09:05:35 MarkDuplicates Tracking 214935 as yet unmatched pairs. 4995 records in RAM.
INFO 2026-06-08 09:05:37 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 1s. Last read position: chr18:57,668,494
INFO 2026-06-08 09:05:37 MarkDuplicates Tracking 213191 as yet unmatched pairs. 3251 records in RAM.
INFO 2026-06-08 09:05:38 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr18:76,362,428
INFO 2026-06-08 09:05:38 MarkDuplicates Tracking 211338 as yet unmatched pairs. 1397 records in RAM.
INFO 2026-06-08 09:05:41 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 2s. Last read position: chr19:651,813
INFO 2026-06-08 09:05:41 MarkDuplicates Tracking 209306 as yet unmatched pairs. 98714 records in RAM.
INFO 2026-06-08 09:05:42 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr19:1,068,422
INFO 2026-06-08 09:05:42 MarkDuplicates Tracking 208824 as yet unmatched pairs. 98232 records in RAM.
INFO 2026-06-08 09:05:44 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr19:1,255,461
INFO 2026-06-08 09:05:44 MarkDuplicates Tracking 205936 as yet unmatched pairs. 95344 records in RAM.
INFO 2026-06-08 09:05:46 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr19:1,828,503
INFO 2026-06-08 09:05:46 MarkDuplicates Tracking 201973 as yet unmatched pairs. 91372 records in RAM.
INFO 2026-06-08 09:05:47 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr19:2,271,889
INFO 2026-06-08 09:05:47 MarkDuplicates Tracking 201404 as yet unmatched pairs. 90803 records in RAM.
INFO 2026-06-08 09:05:49 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr19:3,543,861
INFO 2026-06-08 09:05:49 MarkDuplicates Tracking 197715 as yet unmatched pairs. 87114 records in RAM.
INFO 2026-06-08 09:05:50 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr19:4,538,099
INFO 2026-06-08 09:05:50 MarkDuplicates Tracking 195497 as yet unmatched pairs. 84895 records in RAM.
INFO 2026-06-08 09:05:52 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr19:5,694,414
INFO 2026-06-08 09:05:52 MarkDuplicates Tracking 193439 as yet unmatched pairs. 82837 records in RAM.
INFO 2026-06-08 09:05:54 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr19:6,693,036
INFO 2026-06-08 09:05:54 MarkDuplicates Tracking 197366 as yet unmatched pairs. 86764 records in RAM.
INFO 2026-06-08 09:05:56 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 2s. Last read position: chr19:7,519,495
INFO 2026-06-08 09:05:56 MarkDuplicates Tracking 190420 as yet unmatched pairs. 79818 records in RAM.
INFO 2026-06-08 09:05:59 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 2s. Last read position: chr19:8,371,261
INFO 2026-06-08 09:05:59 MarkDuplicates Tracking 190021 as yet unmatched pairs. 79418 records in RAM.
INFO 2026-06-08 09:06:02 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 2s. Last read position: chr19:10,223,781
INFO 2026-06-08 09:06:02 MarkDuplicates Tracking 185536 as yet unmatched pairs. 74932 records in RAM.
INFO 2026-06-08 09:06:03 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr19:10,680,394
INFO 2026-06-08 09:06:03 MarkDuplicates Tracking 184147 as yet unmatched pairs. 73543 records in RAM.
INFO 2026-06-08 09:06:05 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr19:11,193,807
INFO 2026-06-08 09:06:05 MarkDuplicates Tracking 182426 as yet unmatched pairs. 71816 records in RAM.
INFO 2026-06-08 09:06:06 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr19:12,655,820
INFO 2026-06-08 09:06:06 MarkDuplicates Tracking 180190 as yet unmatched pairs. 69578 records in RAM.
INFO 2026-06-08 09:06:08 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr19:13,099,355
INFO 2026-06-08 09:06:08 MarkDuplicates Tracking 177656 as yet unmatched pairs. 67044 records in RAM.
INFO 2026-06-08 09:06:09 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr19:14,411,555
INFO 2026-06-08 09:06:09 MarkDuplicates Tracking 176217 as yet unmatched pairs. 65605 records in RAM.
INFO 2026-06-08 09:06:11 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr19:15,185,551
INFO 2026-06-08 09:06:11 MarkDuplicates Tracking 175233 as yet unmatched pairs. 64621 records in RAM.
INFO 2026-06-08 09:06:13 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr19:16,185,623
INFO 2026-06-08 09:06:13 MarkDuplicates Tracking 171222 as yet unmatched pairs. 60610 records in RAM.
INFO 2026-06-08 09:06:14 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr19:17,269,028
INFO 2026-06-08 09:06:14 MarkDuplicates Tracking 169262 as yet unmatched pairs. 58650 records in RAM.
INFO 2026-06-08 09:06:16 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr19:18,162,022
INFO 2026-06-08 09:06:16 MarkDuplicates Tracking 166820 as yet unmatched pairs. 56208 records in RAM.
INFO 2026-06-08 09:06:17 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr19:18,589,050
INFO 2026-06-08 09:06:17 MarkDuplicates Tracking 164923 as yet unmatched pairs. 54311 records in RAM.
INFO 2026-06-08 09:06:19 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr19:19,640,472
INFO 2026-06-08 09:06:19 MarkDuplicates Tracking 162223 as yet unmatched pairs. 51611 records in RAM.
INFO 2026-06-08 09:06:21 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr19:34,482,121
INFO 2026-06-08 09:06:21 MarkDuplicates Tracking 160204 as yet unmatched pairs. 49591 records in RAM.
INFO 2026-06-08 09:06:23 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 2s. Last read position: chr19:35,721,414
INFO 2026-06-08 09:06:23 MarkDuplicates Tracking 158203 as yet unmatched pairs. 47590 records in RAM.
INFO 2026-06-08 09:06:25 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 2s. Last read position: chr19:38,283,708
INFO 2026-06-08 09:06:25 MarkDuplicates Tracking 156423 as yet unmatched pairs. 45810 records in RAM.
INFO 2026-06-08 09:06:27 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr19:39,356,857
INFO 2026-06-08 09:06:27 MarkDuplicates Tracking 154499 as yet unmatched pairs. 43886 records in RAM.
INFO 2026-06-08 09:06:29 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr19:39,870,243
INFO 2026-06-08 09:06:29 MarkDuplicates Tracking 155328 as yet unmatched pairs. 44710 records in RAM.
INFO 2026-06-08 09:06:30 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr19:39,886,573
INFO 2026-06-08 09:06:30 MarkDuplicates Tracking 158900 as yet unmatched pairs. 48282 records in RAM.
INFO 2026-06-08 09:06:31 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr19:39,902,672
INFO 2026-06-08 09:06:31 MarkDuplicates Tracking 151693 as yet unmatched pairs. 41075 records in RAM.
INFO 2026-06-08 09:06:33 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr19:40,326,397
INFO 2026-06-08 09:06:33 MarkDuplicates Tracking 147027 as yet unmatched pairs. 36407 records in RAM.
INFO 2026-06-08 09:06:35 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr19:40,717,321
INFO 2026-06-08 09:06:35 MarkDuplicates Tracking 146059 as yet unmatched pairs. 35439 records in RAM.
INFO 2026-06-08 09:06:36 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr19:41,861,149
INFO 2026-06-08 09:06:36 MarkDuplicates Tracking 150397 as yet unmatched pairs. 39773 records in RAM.
INFO 2026-06-08 09:06:38 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr19:42,273,580
INFO 2026-06-08 09:06:38 MarkDuplicates Tracking 143017 as yet unmatched pairs. 32393 records in RAM.
INFO 2026-06-08 09:06:39 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr19:43,552,163
INFO 2026-06-08 09:06:39 MarkDuplicates Tracking 138809 as yet unmatched pairs. 28162 records in RAM.
INFO 2026-06-08 09:06:41 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr19:44,908,557
INFO 2026-06-08 09:06:41 MarkDuplicates Tracking 136683 as yet unmatched pairs. 26036 records in RAM.
INFO 2026-06-08 09:06:42 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr19:45,621,299
INFO 2026-06-08 09:06:42 MarkDuplicates Tracking 133866 as yet unmatched pairs. 23219 records in RAM.
INFO 2026-06-08 09:06:44 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr19:46,787,766
INFO 2026-06-08 09:06:44 MarkDuplicates Tracking 132326 as yet unmatched pairs. 21679 records in RAM.
INFO 2026-06-08 09:06:45 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr19:48,230,673
INFO 2026-06-08 09:06:45 MarkDuplicates Tracking 130078 as yet unmatched pairs. 19431 records in RAM.
INFO 2026-06-08 09:06:47 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr19:48,921,907
INFO 2026-06-08 09:06:47 MarkDuplicates Tracking 128270 as yet unmatched pairs. 17620 records in RAM.
INFO 2026-06-08 09:06:48 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr19:49,490,820
INFO 2026-06-08 09:06:48 MarkDuplicates Tracking 130810 as yet unmatched pairs. 20160 records in RAM.
INFO 2026-06-08 09:06:51 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 2s. Last read position: chr19:49,680,416
INFO 2026-06-08 09:06:51 MarkDuplicates Tracking 123933 as yet unmatched pairs. 13283 records in RAM.
INFO 2026-06-08 09:06:53 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 2s. Last read position: chr19:50,324,008
INFO 2026-06-08 09:06:53 MarkDuplicates Tracking 120988 as yet unmatched pairs. 10338 records in RAM.
INFO 2026-06-08 09:06:55 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr19:50,480,687
INFO 2026-06-08 09:06:55 MarkDuplicates Tracking 124052 as yet unmatched pairs. 13402 records in RAM.
INFO 2026-06-08 09:06:56 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr19:54,143,929
INFO 2026-06-08 09:06:56 MarkDuplicates Tracking 117590 as yet unmatched pairs. 6940 records in RAM.
INFO 2026-06-08 09:06:58 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr19:54,982,987
INFO 2026-06-08 09:06:58 MarkDuplicates Tracking 115851 as yet unmatched pairs. 5200 records in RAM.
INFO 2026-06-08 09:06:59 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr19:55,651,304
INFO 2026-06-08 09:06:59 MarkDuplicates Tracking 113667 as yet unmatched pairs. 3015 records in RAM.
INFO 2026-06-08 09:07:00 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr19:58,387,287
INFO 2026-06-08 09:07:00 MarkDuplicates Tracking 112494 as yet unmatched pairs. 1842 records in RAM.
INFO 2026-06-08 09:07:02 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr20:2,461,741
INFO 2026-06-08 09:07:02 MarkDuplicates Tracking 110458 as yet unmatched pairs. 28391 records in RAM.
INFO 2026-06-08 09:07:04 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr20:3,861,398
INFO 2026-06-08 09:07:04 MarkDuplicates Tracking 107884 as yet unmatched pairs. 25817 records in RAM.
INFO 2026-06-08 09:07:05 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr20:17,658,879
INFO 2026-06-08 09:07:05 MarkDuplicates Tracking 105199 as yet unmatched pairs. 23129 records in RAM.
INFO 2026-06-08 09:07:07 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr20:23,633,860
INFO 2026-06-08 09:07:07 MarkDuplicates Tracking 108367 as yet unmatched pairs. 26297 records in RAM.
INFO 2026-06-08 09:07:08 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr20:32,435,719
INFO 2026-06-08 09:07:08 MarkDuplicates Tracking 102603 as yet unmatched pairs. 20533 records in RAM.
INFO 2026-06-08 09:07:10 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr20:35,280,794
INFO 2026-06-08 09:07:10 MarkDuplicates Tracking 100907 as yet unmatched pairs. 18837 records in RAM.
INFO 2026-06-08 09:07:11 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr20:37,184,333
INFO 2026-06-08 09:07:11 MarkDuplicates Tracking 99150 as yet unmatched pairs. 17080 records in RAM.
INFO 2026-06-08 09:07:13 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr20:41,169,094
INFO 2026-06-08 09:07:13 MarkDuplicates Tracking 96721 as yet unmatched pairs. 14651 records in RAM.
INFO 2026-06-08 09:07:14 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr20:45,335,901
INFO 2026-06-08 09:07:14 MarkDuplicates Tracking 95235 as yet unmatched pairs. 13165 records in RAM.
INFO 2026-06-08 09:07:16 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr20:46,355,192
INFO 2026-06-08 09:07:16 MarkDuplicates Tracking 93732 as yet unmatched pairs. 11662 records in RAM.
INFO 2026-06-08 09:07:18 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr20:50,191,888
INFO 2026-06-08 09:07:18 MarkDuplicates Tracking 94392 as yet unmatched pairs. 12321 records in RAM.
INFO 2026-06-08 09:07:20 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 2s. Last read position: chr20:58,895,675
INFO 2026-06-08 09:07:20 MarkDuplicates Tracking 91529 as yet unmatched pairs. 9457 records in RAM.
INFO 2026-06-08 09:07:22 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr20:62,324,141
INFO 2026-06-08 09:07:22 MarkDuplicates Tracking 89149 as yet unmatched pairs. 7077 records in RAM.
INFO 2026-06-08 09:07:23 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr20:63,520,845
INFO 2026-06-08 09:07:23 MarkDuplicates Tracking 88098 as yet unmatched pairs. 6026 records in RAM.
INFO 2026-06-08 09:07:25 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr20:63,946,529
INFO 2026-06-08 09:07:25 MarkDuplicates Tracking 83347 as yet unmatched pairs. 1275 records in RAM.
INFO 2026-06-08 09:07:26 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr21:8,218,658
INFO 2026-06-08 09:07:26 MarkDuplicates Tracking 81105 as yet unmatched pairs. 14057 records in RAM.
INFO 2026-06-08 09:07:28 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,189
INFO 2026-06-08 09:07:28 MarkDuplicates Tracking 79711 as yet unmatched pairs. 12654 records in RAM.
INFO 2026-06-08 09:07:29 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr21:32,337,420
INFO 2026-06-08 09:07:29 MarkDuplicates Tracking 78511 as yet unmatched pairs. 11454 records in RAM.
INFO 2026-06-08 09:07:30 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr21:34,886,875
INFO 2026-06-08 09:07:30 MarkDuplicates Tracking 81210 as yet unmatched pairs. 14149 records in RAM.
INFO 2026-06-08 09:07:32 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr21:41,451,229
INFO 2026-06-08 09:07:32 MarkDuplicates Tracking 75260 as yet unmatched pairs. 8199 records in RAM.
INFO 2026-06-08 09:07:34 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr21:43,970,780
INFO 2026-06-08 09:07:34 MarkDuplicates Tracking 72758 as yet unmatched pairs. 5697 records in RAM.
INFO 2026-06-08 09:07:35 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr21:45,473,922
INFO 2026-06-08 09:07:35 MarkDuplicates Tracking 72292 as yet unmatched pairs. 5231 records in RAM.
INFO 2026-06-08 09:07:36 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr21:46,122,517
INFO 2026-06-08 09:07:36 MarkDuplicates Tracking 71383 as yet unmatched pairs. 4322 records in RAM.
INFO 2026-06-08 09:07:38 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 2s. Last read position: chr22:18,160,191
INFO 2026-06-08 09:07:38 MarkDuplicates Tracking 66528 as yet unmatched pairs. 38107 records in RAM.
INFO 2026-06-08 09:07:40 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr22:20,131,895
INFO 2026-06-08 09:07:40 MarkDuplicates Tracking 64803 as yet unmatched pairs. 36381 records in RAM.
INFO 2026-06-08 09:07:42 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr22:22,895,418
INFO 2026-06-08 09:07:42 MarkDuplicates Tracking 69312 as yet unmatched pairs. 40890 records in RAM.
INFO 2026-06-08 09:07:43 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr22:23,311,742
INFO 2026-06-08 09:07:43 MarkDuplicates Tracking 63689 as yet unmatched pairs. 35267 records in RAM.
INFO 2026-06-08 09:07:45 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr22:24,187,340
INFO 2026-06-08 09:07:45 MarkDuplicates Tracking 60998 as yet unmatched pairs. 32576 records in RAM.
INFO 2026-06-08 09:07:47 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr22:28,797,078
INFO 2026-06-08 09:07:47 MarkDuplicates Tracking 60121 as yet unmatched pairs. 31699 records in RAM.
INFO 2026-06-08 09:07:48 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr22:29,806,856
INFO 2026-06-08 09:07:48 MarkDuplicates Tracking 54531 as yet unmatched pairs. 26109 records in RAM.
INFO 2026-06-08 09:07:51 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 2s. Last read position: chr22:31,713,282
INFO 2026-06-08 09:07:51 MarkDuplicates Tracking 52374 as yet unmatched pairs. 23952 records in RAM.
INFO 2026-06-08 09:07:52 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr22:36,288,289
INFO 2026-06-08 09:07:52 MarkDuplicates Tracking 51382 as yet unmatched pairs. 22960 records in RAM.
INFO 2026-06-08 09:07:54 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr22:36,936,553
INFO 2026-06-08 09:07:54 MarkDuplicates Tracking 48898 as yet unmatched pairs. 20476 records in RAM.
INFO 2026-06-08 09:07:55 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr22:37,922,393
INFO 2026-06-08 09:07:55 MarkDuplicates Tracking 46927 as yet unmatched pairs. 18505 records in RAM.
INFO 2026-06-08 09:07:57 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr22:39,149,780
INFO 2026-06-08 09:07:57 MarkDuplicates Tracking 44429 as yet unmatched pairs. 16007 records in RAM.
INFO 2026-06-08 09:07:59 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 2s. Last read position: chr22:41,178,074
INFO 2026-06-08 09:07:59 MarkDuplicates Tracking 42949 as yet unmatched pairs. 14521 records in RAM.
INFO 2026-06-08 09:08:01 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr22:42,214,945
INFO 2026-06-08 09:08:01 MarkDuplicates Tracking 40734 as yet unmatched pairs. 12306 records in RAM.
INFO 2026-06-08 09:08:03 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr22:45,729,580
INFO 2026-06-08 09:08:03 MarkDuplicates Tracking 39641 as yet unmatched pairs. 11213 records in RAM.
INFO 2026-06-08 09:08:05 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 2s. Last read position: chr22:49,794,083
INFO 2026-06-08 09:08:05 MarkDuplicates Tracking 37229 as yet unmatched pairs. 8801 records in RAM.
INFO 2026-06-08 09:08:06 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr22:50,282,182
INFO 2026-06-08 09:08:06 MarkDuplicates Tracking 35981 as yet unmatched pairs. 7553 records in RAM.
INFO 2026-06-08 09:08:08 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 2s. Last read position: chr22:50,505,692
INFO 2026-06-08 09:08:08 MarkDuplicates Tracking 32141 as yet unmatched pairs. 3713 records in RAM.
INFO 2026-06-08 09:08:10 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chr22:50,769,090
INFO 2026-06-08 09:08:10 MarkDuplicates Tracking 28727 as yet unmatched pairs. 299 records in RAM.
INFO 2026-06-08 09:08:12 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chrX:10,063,471
INFO 2026-06-08 09:08:12 MarkDuplicates Tracking 26382 as yet unmatched pairs. 23439 records in RAM.
INFO 2026-06-08 09:08:13 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chrX:23,721,946
INFO 2026-06-08 09:08:13 MarkDuplicates Tracking 24923 as yet unmatched pairs. 21978 records in RAM.
INFO 2026-06-08 09:08:15 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chrX:41,205,350
INFO 2026-06-08 09:08:15 MarkDuplicates Tracking 23716 as yet unmatched pairs. 20771 records in RAM.
INFO 2026-06-08 09:08:16 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chrX:47,568,872
INFO 2026-06-08 09:08:16 MarkDuplicates Tracking 21776 as yet unmatched pairs. 18831 records in RAM.
INFO 2026-06-08 09:08:18 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chrX:49,038,333
INFO 2026-06-08 09:08:18 MarkDuplicates Tracking 22124 as yet unmatched pairs. 19179 records in RAM.
INFO 2026-06-08 09:08:19 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chrX:53,215,976
INFO 2026-06-08 09:08:19 MarkDuplicates Tracking 18859 as yet unmatched pairs. 15914 records in RAM.
INFO 2026-06-08 09:08:21 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chrX:57,592,401
INFO 2026-06-08 09:08:21 MarkDuplicates Tracking 16924 as yet unmatched pairs. 13979 records in RAM.
INFO 2026-06-08 09:08:22 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chrX:71,460,766
INFO 2026-06-08 09:08:22 MarkDuplicates Tracking 14522 as yet unmatched pairs. 11577 records in RAM.
INFO 2026-06-08 09:08:23 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chrX:84,413,463
INFO 2026-06-08 09:08:23 MarkDuplicates Tracking 12955 as yet unmatched pairs. 10010 records in RAM.
INFO 2026-06-08 09:08:25 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chrX:115,636,835
INFO 2026-06-08 09:08:25 MarkDuplicates Tracking 12131 as yet unmatched pairs. 9186 records in RAM.
INFO 2026-06-08 09:08:27 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chrX:132,956,828
INFO 2026-06-08 09:08:27 MarkDuplicates Tracking 10454 as yet unmatched pairs. 7509 records in RAM.
INFO 2026-06-08 09:08:29 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chrX:153,767,269
INFO 2026-06-08 09:08:29 MarkDuplicates Tracking 8814 as yet unmatched pairs. 5869 records in RAM.
INFO 2026-06-08 09:08:30 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chrX:154,352,184
INFO 2026-06-08 09:08:30 MarkDuplicates Tracking 11167 as yet unmatched pairs. 8222 records in RAM.
INFO 2026-06-08 09:08:32 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chrX:154,367,691
INFO 2026-06-08 09:08:32 MarkDuplicates Tracking 8817 as yet unmatched pairs. 5872 records in RAM.
INFO 2026-06-08 09:08:33 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chrX:156,023,339
INFO 2026-06-08 09:08:33 MarkDuplicates Tracking 3141 as yet unmatched pairs. 196 records in RAM.
INFO 2026-06-08 09:08:34 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: GL000220.1:159,468
INFO 2026-06-08 09:08:34 MarkDuplicates Tracking 1775 as yet unmatched pairs. 26 records in RAM.
INFO 2026-06-08 09:08:35 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: KI270733.1:177,488
INFO 2026-06-08 09:08:35 MarkDuplicates Tracking 267 as yet unmatched pairs. 14 records in RAM.
INFO 2026-06-08 09:08:36 MarkDuplicates Read 606331611 records. 0 pairs never matched.
INFO 2026-06-08 09:09:14 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141592; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:09:14 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:09:17 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:09:17 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:09:38 OpticalDuplicateFinder Large duplicate set. size = 1184
INFO 2026-06-08 09:09:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,348
INFO 2026-06-08 09:09:43 OpticalDuplicateFinder Large duplicate set. size = 1075
INFO 2026-06-08 09:09:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,900
INFO 2026-06-08 09:09:43 OpticalDuplicateFinder Large duplicate set. size = 1211
INFO 2026-06-08 09:09:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,803
INFO 2026-06-08 09:09:43 OpticalDuplicateFinder Large duplicate set. size = 1034
INFO 2026-06-08 09:09:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,351
INFO 2026-06-08 09:09:43 OpticalDuplicateFinder Large duplicate set. size = 1073
INFO 2026-06-08 09:09:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,199
INFO 2026-06-08 09:09:43 OpticalDuplicateFinder Large duplicate set. size = 2254
INFO 2026-06-08 09:09:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,451
INFO 2026-06-08 09:09:43 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,177
INFO 2026-06-08 09:09:43 OpticalDuplicateFinder Large duplicate set. size = 1089
INFO 2026-06-08 09:09:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,945
INFO 2026-06-08 09:09:43 OpticalDuplicateFinder Large duplicate set. size = 1588
INFO 2026-06-08 09:09:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,490
INFO 2026-06-08 09:09:43 OpticalDuplicateFinder Large duplicate set. size = 1322
INFO 2026-06-08 09:09:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,916
INFO 2026-06-08 09:09:43 OpticalDuplicateFinder Large duplicate set. size = 1253
INFO 2026-06-08 09:09:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,068
INFO 2026-06-08 09:09:43 OpticalDuplicateFinder Large duplicate set. size = 1167
INFO 2026-06-08 09:09:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,675
INFO 2026-06-08 09:09:43 OpticalDuplicateFinder Large duplicate set. size = 1236
INFO 2026-06-08 09:09:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,063
INFO 2026-06-08 09:10:59 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:10:59 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:12:03 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:12:11 MarkDuplicates After generateDuplicateIndexes freeMemory: 203979352; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:12:11 MarkDuplicates Marking 424281652 records as duplicates.
INFO 2026-06-08 09:12:11 MarkDuplicates Found 18525921 optical duplicate clusters.
INFO 2026-06-08 09:12:11 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:12:27 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:21,852,720
INFO 2026-06-08 09:12:43 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:31s. Time for last 10,000,000: 15s. Last read position: chr1:40,061,743
INFO 2026-06-08 09:12:58 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:46s. Time for last 10,000,000: 15s. Last read position: chr1:116,388,690
INFO 2026-06-08 09:13:13 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:02s. Time for last 10,000,000: 15s. Last read position: chr1:155,186,174
INFO 2026-06-08 09:13:29 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:17s. Time for last 10,000,000: 15s. Last read position: chr1:194,091,189
INFO 2026-06-08 09:13:44 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:32s. Time for last 10,000,000: 15s. Last read position: chr2:3,465,620
INFO 2026-06-08 09:14:00 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:48s. Time for last 10,000,000: 15s. Last read position: chr2:46,380,682
INFO 2026-06-08 09:14:15 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:03s. Time for last 10,000,000: 15s. Last read position: chr2:97,658,559
INFO 2026-06-08 09:14:31 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:19s. Time for last 10,000,000: 15s. Last read position: chr2:196,137,517
INFO 2026-06-08 09:14:46 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:34s. Time for last 10,000,000: 15s. Last read position: chr2:231,712,497
INFO 2026-06-08 09:15:02 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:50s. Time for last 10,000,000: 15s. Last read position: chr3:45,946,144
INFO 2026-06-08 09:15:17 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:06s. Time for last 10,000,000: 15s. Last read position: chr3:124,848,404
INFO 2026-06-08 09:15:33 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:21s. Time for last 10,000,000: 15s. Last read position: chr4:664,173
INFO 2026-06-08 09:15:48 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:37s. Time for last 10,000,000: 15s. Last read position: chr4:71,187,331
INFO 2026-06-08 09:16:04 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:52s. Time for last 10,000,000: 15s. Last read position: chr5:14,397,065
INFO 2026-06-08 09:16:20 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:08s. Time for last 10,000,000: 15s. Last read position: chr5:139,477,477
INFO 2026-06-08 09:16:35 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:23s. Time for last 10,000,000: 15s. Last read position: chr5:157,106,919
INFO 2026-06-08 09:16:50 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:39s. Time for last 10,000,000: 15s. Last read position: chr6:29,889,376
INFO 2026-06-08 09:17:06 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:04:54s. Time for last 10,000,000: 15s. Last read position: chr6:32,848,750
INFO 2026-06-08 09:17:21 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:09s. Time for last 10,000,000: 15s. Last read position: chr6:108,366,284
INFO 2026-06-08 09:17:37 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:25s. Time for last 10,000,000: 15s. Last read position: chr7:5,528,155
INFO 2026-06-08 09:17:52 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:41s. Time for last 10,000,000: 15s. Last read position: chr7:77,121,748
INFO 2026-06-08 09:18:08 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:05:56s. Time for last 10,000,000: 15s. Last read position: chr7:139,962,044
INFO 2026-06-08 09:18:23 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:12s. Time for last 10,000,000: 15s. Last read position: chr8:41,933,286
INFO 2026-06-08 09:18:39 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:27s. Time for last 10,000,000: 15s. Last read position: chr8:143,873,155
INFO 2026-06-08 09:18:54 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:42s. Time for last 10,000,000: 15s. Last read position: chr9:91,220,974
INFO 2026-06-08 09:19:10 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:06:58s. Time for last 10,000,000: 15s. Last read position: chr9:131,464,774
INFO 2026-06-08 09:19:25 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:14s. Time for last 10,000,000: 15s. Last read position: chr10:46,016,622
INFO 2026-06-08 09:19:41 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:29s. Time for last 10,000,000: 15s. Last read position: chr10:102,402,338
INFO 2026-06-08 09:19:57 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:45s. Time for last 10,000,000: 15s. Last read position: chr11:1,757,323
INFO 2026-06-08 09:20:12 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:01s. Time for last 10,000,000: 15s. Last read position: chr11:61,743,929
INFO 2026-06-08 09:20:28 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:16s. Time for last 10,000,000: 15s. Last read position: chr11:67,586,402
INFO 2026-06-08 09:20:43 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:32s. Time for last 10,000,000: 15s. Last read position: chr11:120,451,596
INFO 2026-06-08 09:21:00 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:08:48s. Time for last 10,000,000: 16s. Last read position: chr12:45,924,810
INFO 2026-06-08 09:21:16 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:04s. Time for last 10,000,000: 15s. Last read position: chr12:57,211,254
INFO 2026-06-08 09:21:31 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:19s. Time for last 10,000,000: 15s. Last read position: chr12:131,799,490
INFO 2026-06-08 09:21:47 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:35s. Time for last 10,000,000: 15s. Last read position: chr14:22,844,718
INFO 2026-06-08 09:22:02 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:09:51s. Time for last 10,000,000: 15s. Last read position: chr14:77,301,318
INFO 2026-06-08 09:22:18 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:06s. Time for last 10,000,000: 15s. Last read position: chr14:105,707,888
INFO 2026-06-08 09:22:33 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:21s. Time for last 10,000,000: 15s. Last read position: chr15:41,835,166
INFO 2026-06-08 09:22:48 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:37s. Time for last 10,000,000: 15s. Last read position: chr15:82,434,528
INFO 2026-06-08 09:23:04 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:10:52s. Time for last 10,000,000: 15s. Last read position: chr16:3,549,685
INFO 2026-06-08 09:23:19 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:07s. Time for last 10,000,000: 15s. Last read position: chr16:27,469,519
INFO 2026-06-08 09:23:35 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:23s. Time for last 10,000,000: 15s. Last read position: chr16:66,541,931
INFO 2026-06-08 09:23:50 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:11:38s. Time for last 10,000,000: 15s. Last read position: chr17:1,483,015
INFO 2026-06-08 09:24:05 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:11:54s. Time for last 10,000,000: 15s. Last read position: chr17:27,301,811
INFO 2026-06-08 09:24:21 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:09s. Time for last 10,000,000: 15s. Last read position: chr17:44,091,389
INFO 2026-06-08 09:24:36 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:25s. Time for last 10,000,000: 15s. Last read position: chr17:59,602,585
INFO 2026-06-08 09:24:52 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:12:40s. Time for last 10,000,000: 15s. Last read position: chr17:80,298,326
INFO 2026-06-08 09:25:07 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:12:55s. Time for last 10,000,000: 15s. Last read position: chr19:651,813
INFO 2026-06-08 09:25:23 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:11s. Time for last 10,000,000: 15s. Last read position: chr19:8,371,261
INFO 2026-06-08 09:25:38 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:26s. Time for last 10,000,000: 15s. Last read position: chr19:18,162,022
INFO 2026-06-08 09:25:54 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:13:42s. Time for last 10,000,000: 16s. Last read position: chr19:40,326,397
INFO 2026-06-08 09:26:09 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:13:58s. Time for last 10,000,000: 15s. Last read position: chr19:49,490,820
INFO 2026-06-08 09:26:25 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:13s. Time for last 10,000,000: 15s. Last read position: chr20:17,658,879
INFO 2026-06-08 09:26:40 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:14:28s. Time for last 10,000,000: 15s. Last read position: chr20:62,324,141
INFO 2026-06-08 09:26:55 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:14:44s. Time for last 10,000,000: 15s. Last read position: chr21:46,122,517
INFO 2026-06-08 09:27:11 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:14:59s. Time for last 10,000,000: 15s. Last read position: chr22:36,936,553
INFO 2026-06-08 09:27:26 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:14s. Time for last 10,000,000: 15s. Last read position: chrX:10,063,471
INFO 2026-06-08 09:27:42 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:15:30s. Time for last 10,000,000: 15s. Last read position: chrX:132,956,828
INFO 2026-06-08 09:27:59 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:27:59 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:27:59 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:27:59 MarkDuplicates Before output close freeMemory: 203942152; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:27:59 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:27:59 MarkDuplicates After output close freeMemory: 104183480; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:27:59 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 40.48 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory