[W::hts_idx_load3] The index file is older than the data file: 659_gK-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	208244637
Known Splicing Events:	206273627
Partial Novel Splicing Events:	1190833
Novel Splicing Events:	709212
Filtered Splicing Events:	70965

Total splicing  Junctions:	355522
Known Splicing Junctions:	225329
Partial Novel Splicing Junctions:	78598
Novel Splicing Junctions:	51595

===================================================================
Create BED file ...
Create Interact file ...