File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/1da5aa3a2c0bfa7353cf951565317f/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (659_gK-T1-TRNA-1_B23WHTKLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/5a85f205799c5bfdcfc696cdf250af/659_gK-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/65ce9549dc3c4b7d4dcc497bc0cb43/659_gK-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/b02a7396bf6caf366aae276126d7b9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/1da5aa3a2c0bfa7353cf951565317f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/1da5aa3a2c0bfa7353cf951565317f/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 208244637
[W::hts_idx_load3] The index file is older than the data file: 659_gK-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	208244637
Known Splicing Events:	206273627
Partial Novel Splicing Events:	1190833
Novel Splicing Events:	709212
Filtered Splicing Events:	70965

Total splicing  Junctions:	355522
Known Splicing Junctions:	225329
Partial Novel Splicing Junctions:	78598
Novel Splicing Junctions:	51595

===================================================================
Create BED file ...
Create Interact file ...