Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_cAd-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_cAd-T1-TRNA-1_B23WHTKLT4_1.md.bam --METRICS_FILE 659_cAd-T1-TRNA-1_B23WHTKLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:48:30.513 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:48:30 GMT 2026] MarkDuplicates --INPUT 659_cAd-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_cAd-T1-TRNA-1_B23WHTKLT4_1.md.bam --METRICS_FILE 659_cAd-T1-TRNA-1_B23WHTKLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:48:30 GMT 2026] Executing as ?@nf-78fe9026c82fd110e3d7a5564aba3f62-fc207-vwlqj on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:48:30 MarkDuplicates Start of doWork freeMemory: 105492872; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:48:30 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:48:30 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:48:35 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,051,624
INFO 2026-06-08 08:48:35 MarkDuplicates Tracking 2552 as yet unmatched pairs. 783 records in RAM.
INFO 2026-06-08 08:48:37 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:1,637,432
INFO 2026-06-08 08:48:37 MarkDuplicates Tracking 4099 as yet unmatched pairs. 174 records in RAM.
INFO 2026-06-08 08:48:40 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 3s. Last read position: chr1:6,327,345
INFO 2026-06-08 08:48:40 MarkDuplicates Tracking 6047 as yet unmatched pairs. 180 records in RAM.
INFO 2026-06-08 08:48:42 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:9,749,620
INFO 2026-06-08 08:48:42 MarkDuplicates Tracking 7845 as yet unmatched pairs. 227 records in RAM.
INFO 2026-06-08 08:48:44 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:12,311,462
INFO 2026-06-08 08:48:44 MarkDuplicates Tracking 9398 as yet unmatched pairs. 140 records in RAM.
INFO 2026-06-08 08:48:46 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:16,455,804
INFO 2026-06-08 08:48:46 MarkDuplicates Tracking 10783 as yet unmatched pairs. 153 records in RAM.
INFO 2026-06-08 08:48:49 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:19,198,544
INFO 2026-06-08 08:48:49 MarkDuplicates Tracking 12519 as yet unmatched pairs. 271 records in RAM.
INFO 2026-06-08 08:48:51 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 2s. Last read position: chr1:21,828,050
INFO 2026-06-08 08:48:51 MarkDuplicates Tracking 14294 as yet unmatched pairs. 468 records in RAM.
INFO 2026-06-08 08:48:53 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:21,890,002
INFO 2026-06-08 08:48:53 MarkDuplicates Tracking 16437 as yet unmatched pairs. 991 records in RAM.
INFO 2026-06-08 08:48:55 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 2s. Last read position: chr1:24,120,862
INFO 2026-06-08 08:48:55 MarkDuplicates Tracking 17346 as yet unmatched pairs. 339 records in RAM.
INFO 2026-06-08 08:48:57 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:26,697,031
INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 18653 as yet unmatched pairs. 148 records in RAM.
INFO 2026-06-08 08:48:59 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 2s. Last read position: chr1:28,272,365
INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 20219 as yet unmatched pairs. 106 records in RAM.
INFO 2026-06-08 08:49:02 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 2s. Last read position: chr1:31,690,549
INFO 2026-06-08 08:49:02 MarkDuplicates Tracking 21930 as yet unmatched pairs. 278 records in RAM.
INFO 2026-06-08 08:49:03 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:32,964,208
INFO 2026-06-08 08:49:03 MarkDuplicates Tracking 24102 as yet unmatched pairs. 813 records in RAM.
INFO 2026-06-08 08:49:05 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:36,472,577
INFO 2026-06-08 08:49:05 MarkDuplicates Tracking 25064 as yet unmatched pairs. 33 records in RAM.
INFO 2026-06-08 08:49:07 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:39,452,156
INFO 2026-06-08 08:49:07 MarkDuplicates Tracking 26947 as yet unmatched pairs. 344 records in RAM.
INFO 2026-06-08 08:49:09 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:42,926,684
INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 29001 as yet unmatched pairs. 901 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 2s. Last read position: chr1:43,606,855
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 30722 as yet unmatched pairs. 836 records in RAM.
INFO 2026-06-08 08:49:14 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 2s. Last read position: chr1:46,028,901
INFO 2026-06-08 08:49:14 MarkDuplicates Tracking 31908 as yet unmatched pairs. 416 records in RAM.
INFO 2026-06-08 08:49:16 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:52,415,357
INFO 2026-06-08 08:49:16 MarkDuplicates Tracking 33507 as yet unmatched pairs. 216 records in RAM.
INFO 2026-06-08 08:49:17 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:61,808,475
INFO 2026-06-08 08:49:17 MarkDuplicates Tracking 35340 as yet unmatched pairs. 622 records in RAM.
INFO 2026-06-08 08:49:20 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 2s. Last read position: chr1:84,501,878
INFO 2026-06-08 08:49:20 MarkDuplicates Tracking 36632 as yet unmatched pairs. 587 records in RAM.
INFO 2026-06-08 08:49:22 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:93,582,797
INFO 2026-06-08 08:49:22 MarkDuplicates Tracking 38420 as yet unmatched pairs. 854 records in RAM.
INFO 2026-06-08 08:49:23 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:108,992,315
INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 38975 as yet unmatched pairs. 155 records in RAM.
INFO 2026-06-08 08:49:25 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:112,701,512
INFO 2026-06-08 08:49:25 MarkDuplicates Tracking 42410 as yet unmatched pairs. 2154 records in RAM.
INFO 2026-06-08 08:49:27 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:116,388,148
INFO 2026-06-08 08:49:27 MarkDuplicates Tracking 42277 as yet unmatched pairs. 469 records in RAM.
INFO 2026-06-08 08:49:30 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 2s. Last read position: chr1:119,953,574
INFO 2026-06-08 08:49:30 MarkDuplicates Tracking 44319 as yet unmatched pairs. 1070 records in RAM.
INFO 2026-06-08 08:49:31 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:145,996,165
INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 44193 as yet unmatched pairs. 154 records in RAM.
INFO 2026-06-08 08:49:33 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:148,870,235
INFO 2026-06-08 08:49:33 MarkDuplicates Tracking 44764 as yet unmatched pairs. 81 records in RAM.
INFO 2026-06-08 08:49:34 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:150,077,688
INFO 2026-06-08 08:49:34 MarkDuplicates Tracking 45890 as yet unmatched pairs. 132 records in RAM.
INFO 2026-06-08 08:49:36 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:150,968,931
INFO 2026-06-08 08:49:36 MarkDuplicates Tracking 47827 as yet unmatched pairs. 601 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:152,306,927
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 49202 as yet unmatched pairs. 529 records in RAM.
INFO 2026-06-08 08:49:40 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 2s. Last read position: chr1:154,157,605
INFO 2026-06-08 08:49:40 MarkDuplicates Tracking 56519 as yet unmatched pairs. 6207 records in RAM.
INFO 2026-06-08 08:49:43 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 2s. Last read position: chr1:154,945,071
INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 52257 as yet unmatched pairs. 357 records in RAM.
INFO 2026-06-08 08:49:44 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:155,239,684
INFO 2026-06-08 08:49:44 MarkDuplicates Tracking 53577 as yet unmatched pairs. 209 records in RAM.
INFO 2026-06-08 08:49:46 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:156,114,880
INFO 2026-06-08 08:49:46 MarkDuplicates Tracking 55894 as yet unmatched pairs. 1209 records in RAM.
INFO 2026-06-08 08:49:48 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:156,139,790
INFO 2026-06-08 08:49:48 MarkDuplicates Tracking 57669 as yet unmatched pairs. 694 records in RAM.
INFO 2026-06-08 08:49:49 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:158,847,795
INFO 2026-06-08 08:49:49 MarkDuplicates Tracking 58577 as yet unmatched pairs. 28 records in RAM.
INFO 2026-06-08 08:49:51 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:161,214,197
INFO 2026-06-08 08:49:51 MarkDuplicates Tracking 60277 as yet unmatched pairs. 196 records in RAM.
INFO 2026-06-08 08:49:53 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:167,991,241
INFO 2026-06-08 08:49:53 MarkDuplicates Tracking 61631 as yet unmatched pairs. 87 records in RAM.
INFO 2026-06-08 08:49:54 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:172,442,093
INFO 2026-06-08 08:49:54 MarkDuplicates Tracking 63199 as yet unmatched pairs. 230 records in RAM.
INFO 2026-06-08 08:49:56 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:180,196,281
INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 65589 as yet unmatched pairs. 1030 records in RAM.
INFO 2026-06-08 08:49:58 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:183,240,076
INFO 2026-06-08 08:49:58 MarkDuplicates Tracking 67526 as yet unmatched pairs. 1114 records in RAM.
INFO 2026-06-08 08:49:59 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:196,249,632
INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 67913 as yet unmatched pairs. 18 records in RAM.
INFO 2026-06-08 08:50:01 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:201,497,229
INFO 2026-06-08 08:50:01 MarkDuplicates Tracking 69495 as yet unmatched pairs. 19 records in RAM.
INFO 2026-06-08 08:50:03 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:203,799,555
INFO 2026-06-08 08:50:03 MarkDuplicates Tracking 71151 as yet unmatched pairs. 232 records in RAM.
INFO 2026-06-08 08:50:04 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:206,012,312
INFO 2026-06-08 08:50:04 MarkDuplicates Tracking 73403 as yet unmatched pairs. 986 records in RAM.
INFO 2026-06-08 08:50:06 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 2s. Last read position: chr1:207,886,885
INFO 2026-06-08 08:50:06 MarkDuplicates Tracking 73907 as yet unmatched pairs. 21 records in RAM.
INFO 2026-06-08 08:50:08 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:212,619,444
INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 75627 as yet unmatched pairs. 161 records in RAM.
INFO 2026-06-08 08:50:10 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:223,749,070
INFO 2026-06-08 08:50:10 MarkDuplicates Tracking 77469 as yet unmatched pairs. 671 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:226,736,993
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 78201 as yet unmatched pairs. 137 records in RAM.
INFO 2026-06-08 08:50:14 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:230,762,731
INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 79891 as yet unmatched pairs. 69 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:235,813,002
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 82171 as yet unmatched pairs. 410 records in RAM.
INFO 2026-06-08 08:50:17 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:246,890,040
INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 83391 as yet unmatched pairs. 193 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 2s. Last read position: chr2:9,630,317
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 85242 as yet unmatched pairs. 85148 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:20,204,254
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 87079 as yet unmatched pairs. 86985 records in RAM.
INFO 2026-06-08 08:50:23 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr2:27,033,068
INFO 2026-06-08 08:50:23 MarkDuplicates Tracking 88028 as yet unmatched pairs. 87933 records in RAM.
INFO 2026-06-08 08:50:24 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr2:28,752,068
INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 91296 as yet unmatched pairs. 91200 records in RAM.
INFO 2026-06-08 08:50:26 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,256
INFO 2026-06-08 08:50:26 MarkDuplicates Tracking 135808 as yet unmatched pairs. 89041 records in RAM.
INFO 2026-06-08 08:50:28 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:50:28 MarkDuplicates Tracking 538952 as yet unmatched pairs. 72918 records in RAM.
INFO 2026-06-08 08:50:30 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 830381 as yet unmatched pairs. 61077 records in RAM.
INFO 2026-06-08 08:50:31 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:36,893,908
INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 880603 as yet unmatched pairs. 58859 records in RAM.
INFO 2026-06-08 08:50:33 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:43,224,482
INFO 2026-06-08 08:50:33 MarkDuplicates Tracking 879049 as yet unmatched pairs. 57305 records in RAM.
INFO 2026-06-08 08:50:35 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:47,373,467
INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 877806 as yet unmatched pairs. 56062 records in RAM.
INFO 2026-06-08 08:50:37 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:54,632,748
INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 876658 as yet unmatched pairs. 54913 records in RAM.
INFO 2026-06-08 08:50:39 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 2s. Last read position: chr2:58,221,997
INFO 2026-06-08 08:50:39 MarkDuplicates Tracking 873871 as yet unmatched pairs. 52126 records in RAM.
INFO 2026-06-08 08:50:41 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:65,253,793
INFO 2026-06-08 08:50:41 MarkDuplicates Tracking 873399 as yet unmatched pairs. 51653 records in RAM.
INFO 2026-06-08 08:50:43 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:71,363,170
INFO 2026-06-08 08:50:43 MarkDuplicates Tracking 871221 as yet unmatched pairs. 49473 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:74,369,964
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 869707 as yet unmatched pairs. 47959 records in RAM.
INFO 2026-06-08 08:50:47 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:85,394,788
INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 868656 as yet unmatched pairs. 46907 records in RAM.
INFO 2026-06-08 08:50:48 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:88,857,374
INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 867653 as yet unmatched pairs. 45893 records in RAM.
INFO 2026-06-08 08:50:50 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:97,658,213
INFO 2026-06-08 08:50:50 MarkDuplicates Tracking 865342 as yet unmatched pairs. 43582 records in RAM.
INFO 2026-06-08 08:50:52 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 2s. Last read position: chr2:101,882,641
INFO 2026-06-08 08:50:52 MarkDuplicates Tracking 864028 as yet unmatched pairs. 42266 records in RAM.
INFO 2026-06-08 08:50:55 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 2s. Last read position: chr2:108,765,668
INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 863536 as yet unmatched pairs. 41772 records in RAM.
INFO 2026-06-08 08:50:56 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:110,546,629
INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 862008 as yet unmatched pairs. 40244 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:113,596,085
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 860641 as yet unmatched pairs. 38871 records in RAM.
INFO 2026-06-08 08:50:59 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:127,723,024
INFO 2026-06-08 08:50:59 MarkDuplicates Tracking 859335 as yet unmatched pairs. 37565 records in RAM.
INFO 2026-06-08 08:51:01 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:138,288,208
INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 857554 as yet unmatched pairs. 35782 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:159,178,989
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 856363 as yet unmatched pairs. 34591 records in RAM.
INFO 2026-06-08 08:51:04 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:170,715,483
INFO 2026-06-08 08:51:04 MarkDuplicates Tracking 854742 as yet unmatched pairs. 32969 records in RAM.
INFO 2026-06-08 08:51:06 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:177,215,759
INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 854001 as yet unmatched pairs. 32227 records in RAM.
INFO 2026-06-08 08:51:08 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:185,763,209
INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 852232 as yet unmatched pairs. 30451 records in RAM.
INFO 2026-06-08 08:51:10 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:189,001,535
INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 851963 as yet unmatched pairs. 30170 records in RAM.
INFO 2026-06-08 08:51:11 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:189,666,539
INFO 2026-06-08 08:51:11 MarkDuplicates Tracking 848743 as yet unmatched pairs. 26950 records in RAM.
INFO 2026-06-08 08:51:14 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 2s. Last read position: chr2:197,498,693
INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 848104 as yet unmatched pairs. 26306 records in RAM.
INFO 2026-06-08 08:51:15 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:203,447,993
INFO 2026-06-08 08:51:15 MarkDuplicates Tracking 846186 as yet unmatched pairs. 24388 records in RAM.
INFO 2026-06-08 08:51:17 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:215,361,969
INFO 2026-06-08 08:51:17 MarkDuplicates Tracking 853015 as yet unmatched pairs. 31217 records in RAM.
INFO 2026-06-08 08:51:19 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,129
INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 854775 as yet unmatched pairs. 32977 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:215,376,629
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 853003 as yet unmatched pairs. 31205 records in RAM.
INFO 2026-06-08 08:51:22 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:215,386,767
INFO 2026-06-08 08:51:22 MarkDuplicates Tracking 844131 as yet unmatched pairs. 22333 records in RAM.
INFO 2026-06-08 08:51:24 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:215,404,559
INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 843157 as yet unmatched pairs. 21359 records in RAM.
INFO 2026-06-08 08:51:26 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:215,410,025
INFO 2026-06-08 08:51:26 MarkDuplicates Tracking 844152 as yet unmatched pairs. 22354 records in RAM.
INFO 2026-06-08 08:51:28 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 2s. Last read position: chr2:215,428,195
INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 842365 as yet unmatched pairs. 20567 records in RAM.
INFO 2026-06-08 08:51:30 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:216,499,270
INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 837491 as yet unmatched pairs. 15693 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:218,245,422
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 834592 as yet unmatched pairs. 12792 records in RAM.
INFO 2026-06-08 08:51:34 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:219,220,767
INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 832418 as yet unmatched pairs. 10618 records in RAM.
INFO 2026-06-08 08:51:36 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:219,539,906
INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 831370 as yet unmatched pairs. 9570 records in RAM.
INFO 2026-06-08 08:51:37 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:229,787,635
INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 828781 as yet unmatched pairs. 6971 records in RAM.
INFO 2026-06-08 08:51:39 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:232,768,549
INFO 2026-06-08 08:51:39 MarkDuplicates Tracking 827231 as yet unmatched pairs. 5421 records in RAM.
INFO 2026-06-08 08:51:41 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:237,368,921
INFO 2026-06-08 08:51:41 MarkDuplicates Tracking 826077 as yet unmatched pairs. 4266 records in RAM.
INFO 2026-06-08 08:51:42 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:240,464,953
INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 824166 as yet unmatched pairs. 2354 records in RAM.
INFO 2026-06-08 08:51:44 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:241,584,667
INFO 2026-06-08 08:51:44 MarkDuplicates Tracking 822305 as yet unmatched pairs. 491 records in RAM.
INFO 2026-06-08 08:51:46 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 2s. Last read position: chr3:9,915,483
INFO 2026-06-08 08:51:46 MarkDuplicates Tracking 820653 as yet unmatched pairs. 46421 records in RAM.
INFO 2026-06-08 08:51:48 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr3:13,637,720
INFO 2026-06-08 08:51:48 MarkDuplicates Tracking 818993 as yet unmatched pairs. 44759 records in RAM.
INFO 2026-06-08 08:51:50 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:30,691,458
INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 817907 as yet unmatched pairs. 43658 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr3:37,473,398
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 816094 as yet unmatched pairs. 41823 records in RAM.
INFO 2026-06-08 08:51:53 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr3:40,761,652
INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 814571 as yet unmatched pairs. 40300 records in RAM.
INFO 2026-06-08 08:51:55 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:45,110,640
INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 813819 as yet unmatched pairs. 39546 records in RAM.
INFO 2026-06-08 08:51:57 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:47,000,345
INFO 2026-06-08 08:51:57 MarkDuplicates Tracking 811569 as yet unmatched pairs. 37290 records in RAM.
INFO 2026-06-08 08:52:00 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 2s. Last read position: chr3:47,877,424
INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 810312 as yet unmatched pairs. 36032 records in RAM.
INFO 2026-06-08 08:52:02 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 2s. Last read position: chr3:48,593,377
INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 808172 as yet unmatched pairs. 33892 records in RAM.
INFO 2026-06-08 08:52:03 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:49,131,604
INFO 2026-06-08 08:52:03 MarkDuplicates Tracking 806282 as yet unmatched pairs. 32002 records in RAM.
INFO 2026-06-08 08:52:05 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr3:49,896,270
INFO 2026-06-08 08:52:05 MarkDuplicates Tracking 805678 as yet unmatched pairs. 31398 records in RAM.
INFO 2026-06-08 08:52:07 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:50,641,732
INFO 2026-06-08 08:52:07 MarkDuplicates Tracking 803307 as yet unmatched pairs. 29026 records in RAM.
INFO 2026-06-08 08:52:09 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:52,407,185
INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 801730 as yet unmatched pairs. 27448 records in RAM.
INFO 2026-06-08 08:52:11 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:56,638,701
INFO 2026-06-08 08:52:11 MarkDuplicates Tracking 800037 as yet unmatched pairs. 25750 records in RAM.
INFO 2026-06-08 08:52:13 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 2s. Last read position: chr3:58,121,253
INFO 2026-06-08 08:52:13 MarkDuplicates Tracking 800353 as yet unmatched pairs. 26065 records in RAM.
INFO 2026-06-08 08:52:15 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:58,169,616
INFO 2026-06-08 08:52:15 MarkDuplicates Tracking 798938 as yet unmatched pairs. 24650 records in RAM.
INFO 2026-06-08 08:52:16 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:85,484,919
INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 795713 as yet unmatched pairs. 21422 records in RAM.
INFO 2026-06-08 08:52:18 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:100,713,649
INFO 2026-06-08 08:52:18 MarkDuplicates Tracking 795005 as yet unmatched pairs. 20714 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:113,655,168
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 793136 as yet unmatched pairs. 18841 records in RAM.
INFO 2026-06-08 08:52:21 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:122,695,637
INFO 2026-06-08 08:52:21 MarkDuplicates Tracking 791964 as yet unmatched pairs. 17668 records in RAM.
INFO 2026-06-08 08:52:23 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:126,007,090
INFO 2026-06-08 08:52:23 MarkDuplicates Tracking 790421 as yet unmatched pairs. 16125 records in RAM.
INFO 2026-06-08 08:52:24 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:129,260,786
INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 788732 as yet unmatched pairs. 14435 records in RAM.
INFO 2026-06-08 08:52:26 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:136,152,003
INFO 2026-06-08 08:52:26 MarkDuplicates Tracking 787246 as yet unmatched pairs. 12946 records in RAM.
INFO 2026-06-08 08:52:28 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:149,369,833
INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 787636 as yet unmatched pairs. 13336 records in RAM.
INFO 2026-06-08 08:52:29 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:159,764,587
INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 784375 as yet unmatched pairs. 10065 records in RAM.
INFO 2026-06-08 08:52:31 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:174,892,778
INFO 2026-06-08 08:52:31 MarkDuplicates Tracking 782927 as yet unmatched pairs. 8617 records in RAM.
INFO 2026-06-08 08:52:32 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:184,302,411
INFO 2026-06-08 08:52:32 MarkDuplicates Tracking 781828 as yet unmatched pairs. 7517 records in RAM.
INFO 2026-06-08 08:52:34 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr3:186,584,574
INFO 2026-06-08 08:52:34 MarkDuplicates Tracking 780217 as yet unmatched pairs. 5904 records in RAM.
INFO 2026-06-08 08:52:35 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:194,460,729
INFO 2026-06-08 08:52:35 MarkDuplicates Tracking 779274 as yet unmatched pairs. 4959 records in RAM.
INFO 2026-06-08 08:52:37 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:195,779,495
INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 780580 as yet unmatched pairs. 6263 records in RAM.
INFO 2026-06-08 08:52:38 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:195,782,289
INFO 2026-06-08 08:52:38 MarkDuplicates Tracking 782059 as yet unmatched pairs. 7741 records in RAM.
INFO 2026-06-08 08:52:40 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr3:195,785,538
INFO 2026-06-08 08:52:40 MarkDuplicates Tracking 780499 as yet unmatched pairs. 6180 records in RAM.
INFO 2026-06-08 08:52:42 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr3:195,868,413
INFO 2026-06-08 08:52:42 MarkDuplicates Tracking 776986 as yet unmatched pairs. 2666 records in RAM.
INFO 2026-06-08 08:52:44 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 2s. Last read position: chr4:682,022
INFO 2026-06-08 08:52:44 MarkDuplicates Tracking 774320 as yet unmatched pairs. 20208 records in RAM.
INFO 2026-06-08 08:52:45 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr4:1,930,632
INFO 2026-06-08 08:52:45 MarkDuplicates Tracking 772585 as yet unmatched pairs. 18473 records in RAM.
INFO 2026-06-08 08:52:47 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr4:6,619,825
INFO 2026-06-08 08:52:47 MarkDuplicates Tracking 770632 as yet unmatched pairs. 16520 records in RAM.
INFO 2026-06-08 08:52:48 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr4:16,013,278
INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 768775 as yet unmatched pairs. 14661 records in RAM.
INFO 2026-06-08 08:52:50 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr4:39,547,825
INFO 2026-06-08 08:52:50 MarkDuplicates Tracking 767396 as yet unmatched pairs. 13280 records in RAM.
INFO 2026-06-08 08:52:51 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr4:56,459,282
INFO 2026-06-08 08:52:51 MarkDuplicates Tracking 766217 as yet unmatched pairs. 12099 records in RAM.
INFO 2026-06-08 08:52:53 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr4:75,724,808
INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 764694 as yet unmatched pairs. 10571 records in RAM.
INFO 2026-06-08 08:52:54 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr4:82,373,464
INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 762958 as yet unmatched pairs. 8831 records in RAM.
INFO 2026-06-08 08:52:56 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr4:94,640,322
INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 761700 as yet unmatched pairs. 7573 records in RAM.
INFO 2026-06-08 08:52:57 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr4:118,352,338
INFO 2026-06-08 08:52:57 MarkDuplicates Tracking 760213 as yet unmatched pairs. 6078 records in RAM.
INFO 2026-06-08 08:52:59 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr4:128,992,167
INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 758751 as yet unmatched pairs. 4616 records in RAM.
INFO 2026-06-08 08:53:00 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr4:151,104,181
INFO 2026-06-08 08:53:00 MarkDuplicates Tracking 761745 as yet unmatched pairs. 7606 records in RAM.
INFO 2026-06-08 08:53:01 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr4:168,878,145
INFO 2026-06-08 08:53:01 MarkDuplicates Tracking 756724 as yet unmatched pairs. 2582 records in RAM.
INFO 2026-06-08 08:53:03 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr4:186,618,631
INFO 2026-06-08 08:53:03 MarkDuplicates Tracking 754731 as yet unmatched pairs. 586 records in RAM.
INFO 2026-06-08 08:53:04 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr5:5,461,402
INFO 2026-06-08 08:53:04 MarkDuplicates Tracking 753038 as yet unmatched pairs. 30624 records in RAM.
INFO 2026-06-08 08:53:07 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 2s. Last read position: chr5:14,364,693
INFO 2026-06-08 08:53:07 MarkDuplicates Tracking 752255 as yet unmatched pairs. 29840 records in RAM.
INFO 2026-06-08 08:53:08 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr5:17,354,162
INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 749880 as yet unmatched pairs. 27460 records in RAM.
INFO 2026-06-08 08:53:09 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr5:38,933,325
INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 748384 as yet unmatched pairs. 25956 records in RAM.
INFO 2026-06-08 08:53:11 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr5:53,062,809
INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 747571 as yet unmatched pairs. 25142 records in RAM.
INFO 2026-06-08 08:53:14 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 3s. Last read position: chr5:68,273,425
INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 745849 as yet unmatched pairs. 23419 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr5:74,636,184
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 745142 as yet unmatched pairs. 22711 records in RAM.
INFO 2026-06-08 08:53:17 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr5:83,538,886
INFO 2026-06-08 08:53:17 MarkDuplicates Tracking 743503 as yet unmatched pairs. 21071 records in RAM.
INFO 2026-06-08 08:53:19 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr5:100,447,198
INFO 2026-06-08 08:53:19 MarkDuplicates Tracking 741960 as yet unmatched pairs. 19526 records in RAM.
INFO 2026-06-08 08:53:20 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr5:128,178,589
INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 740847 as yet unmatched pairs. 18413 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr5:135,352,978
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 739849 as yet unmatched pairs. 17412 records in RAM.
INFO 2026-06-08 08:53:23 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr5:139,121,139
INFO 2026-06-08 08:53:23 MarkDuplicates Tracking 737719 as yet unmatched pairs. 15279 records in RAM.
INFO 2026-06-08 08:53:25 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr5:141,477,099
INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 736460 as yet unmatched pairs. 14010 records in RAM.
INFO 2026-06-08 08:53:26 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:146,707,228
INFO 2026-06-08 08:53:26 MarkDuplicates Tracking 734952 as yet unmatched pairs. 12493 records in RAM.
INFO 2026-06-08 08:53:29 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 2s. Last read position: chr5:150,402,225
INFO 2026-06-08 08:53:29 MarkDuplicates Tracking 742558 as yet unmatched pairs. 20099 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:150,656,610
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 731628 as yet unmatched pairs. 9169 records in RAM.
INFO 2026-06-08 08:53:32 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:157,787,815
INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 730195 as yet unmatched pairs. 7736 records in RAM.
INFO 2026-06-08 08:53:33 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:171,400,877
INFO 2026-06-08 08:53:33 MarkDuplicates Tracking 730095 as yet unmatched pairs. 7636 records in RAM.
INFO 2026-06-08 08:53:35 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr5:177,269,715
INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 727242 as yet unmatched pairs. 4782 records in RAM.
INFO 2026-06-08 08:53:36 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:179,273,040
INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 725534 as yet unmatched pairs. 3074 records in RAM.
INFO 2026-06-08 08:53:38 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr5:179,833,598
INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 726271 as yet unmatched pairs. 3811 records in RAM.
INFO 2026-06-08 08:53:40 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr6:1,610,473
INFO 2026-06-08 08:53:40 MarkDuplicates Tracking 721980 as yet unmatched pairs. 51074 records in RAM.
INFO 2026-06-08 08:53:41 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr6:7,230,986
INFO 2026-06-08 08:53:41 MarkDuplicates Tracking 720907 as yet unmatched pairs. 50001 records in RAM.
INFO 2026-06-08 08:53:43 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr6:10,749,223
INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 719227 as yet unmatched pairs. 48320 records in RAM.
INFO 2026-06-08 08:53:45 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 2s. Last read position: chr6:25,472,431
INFO 2026-06-08 08:53:45 MarkDuplicates Tracking 717562 as yet unmatched pairs. 46653 records in RAM.
INFO 2026-06-08 08:53:46 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr6:27,808,475
INFO 2026-06-08 08:53:46 MarkDuplicates Tracking 716678 as yet unmatched pairs. 45769 records in RAM.
INFO 2026-06-08 08:53:48 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr6:29,942,557
INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 722094 as yet unmatched pairs. 51180 records in RAM.
INFO 2026-06-08 08:53:49 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr6:30,110,467
INFO 2026-06-08 08:53:49 MarkDuplicates Tracking 713501 as yet unmatched pairs. 42586 records in RAM.
INFO 2026-06-08 08:53:51 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr6:30,743,957
INFO 2026-06-08 08:53:51 MarkDuplicates Tracking 712501 as yet unmatched pairs. 41586 records in RAM.
INFO 2026-06-08 08:53:52 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr6:31,270,400
INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 714472 as yet unmatched pairs. 43546 records in RAM.
INFO 2026-06-08 08:53:54 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr6:31,356,228
INFO 2026-06-08 08:53:54 MarkDuplicates Tracking 709990 as yet unmatched pairs. 39060 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr6:31,649,243
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 707791 as yet unmatched pairs. 36855 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr6:31,828,856
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 707379 as yet unmatched pairs. 36443 records in RAM.
INFO 2026-06-08 08:53:59 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr6:32,031,850
INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 705486 as yet unmatched pairs. 34550 records in RAM.
INFO 2026-06-08 08:54:00 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr6:32,847,513
INFO 2026-06-08 08:54:00 MarkDuplicates Tracking 703878 as yet unmatched pairs. 32942 records in RAM.
INFO 2026-06-08 08:54:02 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:33,304,406
INFO 2026-06-08 08:54:02 MarkDuplicates Tracking 703705 as yet unmatched pairs. 32768 records in RAM.
INFO 2026-06-08 08:54:03 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr6:33,684,884
INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 701124 as yet unmatched pairs. 30187 records in RAM.
INFO 2026-06-08 08:54:05 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr6:35,475,080
INFO 2026-06-08 08:54:05 MarkDuplicates Tracking 699143 as yet unmatched pairs. 28191 records in RAM.
INFO 2026-06-08 08:54:06 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr6:41,786,848
INFO 2026-06-08 08:54:06 MarkDuplicates Tracking 697396 as yet unmatched pairs. 26442 records in RAM.
INFO 2026-06-08 08:54:08 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr6:43,354,877
INFO 2026-06-08 08:54:08 MarkDuplicates Tracking 695988 as yet unmatched pairs. 25033 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:47,232,825
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 694669 as yet unmatched pairs. 23714 records in RAM.
INFO 2026-06-08 08:54:11 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:56,555,486
INFO 2026-06-08 08:54:11 MarkDuplicates Tracking 693373 as yet unmatched pairs. 22414 records in RAM.
INFO 2026-06-08 08:54:13 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:73,696,233
INFO 2026-06-08 08:54:13 MarkDuplicates Tracking 691929 as yet unmatched pairs. 20969 records in RAM.
INFO 2026-06-08 08:54:15 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:83,113,352
INFO 2026-06-08 08:54:15 MarkDuplicates Tracking 690084 as yet unmatched pairs. 19123 records in RAM.
INFO 2026-06-08 08:54:17 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:97,149,853
INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 688493 as yet unmatched pairs. 17532 records in RAM.
INFO 2026-06-08 08:54:18 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr6:109,445,263
INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 687194 as yet unmatched pairs. 16233 records in RAM.
INFO 2026-06-08 08:54:20 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr6:118,917,749
INFO 2026-06-08 08:54:20 MarkDuplicates Tracking 685320 as yet unmatched pairs. 14358 records in RAM.
INFO 2026-06-08 08:54:21 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:135,203,245
INFO 2026-06-08 08:54:21 MarkDuplicates Tracking 684079 as yet unmatched pairs. 13116 records in RAM.
INFO 2026-06-08 08:54:23 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr6:143,136,854
INFO 2026-06-08 08:54:23 MarkDuplicates Tracking 682660 as yet unmatched pairs. 11696 records in RAM.
INFO 2026-06-08 08:54:24 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr6:151,348,774
INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 682244 as yet unmatched pairs. 11280 records in RAM.
INFO 2026-06-08 08:54:25 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr6:151,353,321
INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 680717 as yet unmatched pairs. 9753 records in RAM.
INFO 2026-06-08 08:54:27 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:158,573,419
INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 678411 as yet unmatched pairs. 7446 records in RAM.
INFO 2026-06-08 08:54:28 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr6:158,769,871
INFO 2026-06-08 08:54:28 MarkDuplicates Tracking 675710 as yet unmatched pairs. 4745 records in RAM.
INFO 2026-06-08 08:54:30 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:158,787,126
INFO 2026-06-08 08:54:30 MarkDuplicates Tracking 682841 as yet unmatched pairs. 11876 records in RAM.
INFO 2026-06-08 08:54:32 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:166,365,417
INFO 2026-06-08 08:54:32 MarkDuplicates Tracking 672527 as yet unmatched pairs. 1561 records in RAM.
INFO 2026-06-08 08:54:34 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 2s. Last read position: chr7:729,699
INFO 2026-06-08 08:54:34 MarkDuplicates Tracking 670972 as yet unmatched pairs. 54855 records in RAM.
INFO 2026-06-08 08:54:35 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr7:2,234,999
INFO 2026-06-08 08:54:35 MarkDuplicates Tracking 668758 as yet unmatched pairs. 52640 records in RAM.
INFO 2026-06-08 08:54:37 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr7:5,320,538
INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 667117 as yet unmatched pairs. 50999 records in RAM.
INFO 2026-06-08 08:54:39 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 2s. Last read position: chr7:5,527,727
INFO 2026-06-08 08:54:39 MarkDuplicates Tracking 672343 as yet unmatched pairs. 56224 records in RAM.
INFO 2026-06-08 08:54:41 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,534
INFO 2026-06-08 08:54:41 MarkDuplicates Tracking 672049 as yet unmatched pairs. 55930 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr7:5,712,787
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 661693 as yet unmatched pairs. 45573 records in RAM.
INFO 2026-06-08 08:54:44 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr7:16,801,675
INFO 2026-06-08 08:54:44 MarkDuplicates Tracking 660609 as yet unmatched pairs. 44489 records in RAM.
INFO 2026-06-08 08:54:46 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr7:26,212,130
INFO 2026-06-08 08:54:46 MarkDuplicates Tracking 658976 as yet unmatched pairs. 42856 records in RAM.
INFO 2026-06-08 08:54:47 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr7:35,878,044
INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 657362 as yet unmatched pairs. 41241 records in RAM.
INFO 2026-06-08 08:54:49 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr7:44,107,809
INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 656020 as yet unmatched pairs. 39890 records in RAM.
INFO 2026-06-08 08:54:51 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr7:45,038,193
INFO 2026-06-08 08:54:51 MarkDuplicates Tracking 654215 as yet unmatched pairs. 38085 records in RAM.
INFO 2026-06-08 08:54:52 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr7:55,472,847
INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 652990 as yet unmatched pairs. 36844 records in RAM.
INFO 2026-06-08 08:54:54 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr7:72,940,951
INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 652050 as yet unmatched pairs. 35904 records in RAM.
INFO 2026-06-08 08:54:55 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:73,769,828
INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 651151 as yet unmatched pairs. 35005 records in RAM.
INFO 2026-06-08 08:54:57 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr7:74,964,934
INFO 2026-06-08 08:54:57 MarkDuplicates Tracking 648749 as yet unmatched pairs. 32602 records in RAM.
INFO 2026-06-08 08:54:58 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:76,063,564
INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 648341 as yet unmatched pairs. 32194 records in RAM.
INFO 2026-06-08 08:54:59 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:77,537,601
INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 646855 as yet unmatched pairs. 30707 records in RAM.
INFO 2026-06-08 08:55:01 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr7:92,307,561
INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 645111 as yet unmatched pairs. 28962 records in RAM.
INFO 2026-06-08 08:55:03 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr7:94,416,407
INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 645948 as yet unmatched pairs. 29798 records in RAM.
INFO 2026-06-08 08:55:04 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:98,194,441
INFO 2026-06-08 08:55:04 MarkDuplicates Tracking 641781 as yet unmatched pairs. 25630 records in RAM.
INFO 2026-06-08 08:55:06 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:99,423,892
INFO 2026-06-08 08:55:06 MarkDuplicates Tracking 640217 as yet unmatched pairs. 24066 records in RAM.
INFO 2026-06-08 08:55:07 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:100,397,897
INFO 2026-06-08 08:55:07 MarkDuplicates Tracking 638805 as yet unmatched pairs. 22651 records in RAM.
INFO 2026-06-08 08:55:09 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr7:100,870,666
INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 636935 as yet unmatched pairs. 20781 records in RAM.
INFO 2026-06-08 08:55:10 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,317
INFO 2026-06-08 08:55:10 MarkDuplicates Tracking 637134 as yet unmatched pairs. 20976 records in RAM.
INFO 2026-06-08 08:55:11 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr7:101,157,418
INFO 2026-06-08 08:55:11 MarkDuplicates Tracking 635059 as yet unmatched pairs. 18901 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:102,554,310
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 634899 as yet unmatched pairs. 18740 records in RAM.
INFO 2026-06-08 08:55:14 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr7:105,502,533
INFO 2026-06-08 08:55:14 MarkDuplicates Tracking 632886 as yet unmatched pairs. 16722 records in RAM.
INFO 2026-06-08 08:55:15 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:116,699,117
INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 633565 as yet unmatched pairs. 17399 records in RAM.
INFO 2026-06-08 08:55:17 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr7:116,910,256
INFO 2026-06-08 08:55:17 MarkDuplicates Tracking 631131 as yet unmatched pairs. 14965 records in RAM.
INFO 2026-06-08 08:55:19 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:128,089,583
INFO 2026-06-08 08:55:19 MarkDuplicates Tracking 629564 as yet unmatched pairs. 13396 records in RAM.
INFO 2026-06-08 08:55:20 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:130,497,987
INFO 2026-06-08 08:55:20 MarkDuplicates Tracking 627528 as yet unmatched pairs. 11360 records in RAM.
INFO 2026-06-08 08:55:22 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:138,573,509
INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 626290 as yet unmatched pairs. 10121 records in RAM.
INFO 2026-06-08 08:55:24 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 2s. Last read position: chr7:142,186,032
INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 624288 as yet unmatched pairs. 8119 records in RAM.
INFO 2026-06-08 08:55:25 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr7:143,876,069
INFO 2026-06-08 08:55:25 MarkDuplicates Tracking 622904 as yet unmatched pairs. 6730 records in RAM.
INFO 2026-06-08 08:55:27 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr7:149,250,287
INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 621749 as yet unmatched pairs. 5571 records in RAM.
INFO 2026-06-08 08:55:29 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 2s. Last read position: chr7:151,064,873
INFO 2026-06-08 08:55:29 MarkDuplicates Tracking 620030 as yet unmatched pairs. 3852 records in RAM.
INFO 2026-06-08 08:55:31 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:152,252,054
INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 618124 as yet unmatched pairs. 1946 records in RAM.
INFO 2026-06-08 08:55:33 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr8:6,563,246
INFO 2026-06-08 08:55:33 MarkDuplicates Tracking 616048 as yet unmatched pairs. 41297 records in RAM.
INFO 2026-06-08 08:55:34 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr8:17,230,763
INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 614830 as yet unmatched pairs. 40058 records in RAM.
INFO 2026-06-08 08:55:36 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr8:22,616,057
INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 613033 as yet unmatched pairs. 38261 records in RAM.
INFO 2026-06-08 08:55:38 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr8:28,361,036
INFO 2026-06-08 08:55:38 MarkDuplicates Tracking 611425 as yet unmatched pairs. 36653 records in RAM.
INFO 2026-06-08 08:55:39 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr8:37,828,944
INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 609478 as yet unmatched pairs. 34705 records in RAM.
INFO 2026-06-08 08:55:41 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr8:39,026,759
INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 608524 as yet unmatched pairs. 33750 records in RAM.
INFO 2026-06-08 08:55:43 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr8:47,962,943
INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 606632 as yet unmatched pairs. 31858 records in RAM.
INFO 2026-06-08 08:56:42 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 59s. Last read position: chr8:61,626,220
INFO 2026-06-08 08:56:42 MarkDuplicates Tracking 606513 as yet unmatched pairs. 31737 records in RAM.
INFO 2026-06-08 08:56:44 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr8:70,586,974
INFO 2026-06-08 08:56:44 MarkDuplicates Tracking 605091 as yet unmatched pairs. 30315 records in RAM.
INFO 2026-06-08 08:56:45 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr8:93,923,174
INFO 2026-06-08 08:56:45 MarkDuplicates Tracking 602888 as yet unmatched pairs. 28109 records in RAM.
INFO 2026-06-08 08:56:47 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr8:100,704,362
INFO 2026-06-08 08:56:47 MarkDuplicates Tracking 605193 as yet unmatched pairs. 30413 records in RAM.
INFO 2026-06-08 08:56:48 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr8:102,298,871
INFO 2026-06-08 08:56:48 MarkDuplicates Tracking 599870 as yet unmatched pairs. 25089 records in RAM.
INFO 2026-06-08 08:56:50 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr8:119,243,439
INFO 2026-06-08 08:56:50 MarkDuplicates Tracking 599475 as yet unmatched pairs. 24694 records in RAM.
INFO 2026-06-08 08:56:51 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr8:130,443,410
INFO 2026-06-08 08:56:51 MarkDuplicates Tracking 596690 as yet unmatched pairs. 21906 records in RAM.
INFO 2026-06-08 08:56:53 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr8:143,382,609
INFO 2026-06-08 08:56:53 MarkDuplicates Tracking 595141 as yet unmatched pairs. 20355 records in RAM.
INFO 2026-06-08 08:56:55 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr8:143,730,133
INFO 2026-06-08 08:56:55 MarkDuplicates Tracking 593601 as yet unmatched pairs. 18813 records in RAM.
INFO 2026-06-08 08:56:56 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,402
INFO 2026-06-08 08:56:56 MarkDuplicates Tracking 592331 as yet unmatched pairs. 17543 records in RAM.
INFO 2026-06-08 08:56:57 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,817
INFO 2026-06-08 08:56:57 MarkDuplicates Tracking 592777 as yet unmatched pairs. 17989 records in RAM.
INFO 2026-06-08 08:56:58 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,118
INFO 2026-06-08 08:56:58 MarkDuplicates Tracking 590389 as yet unmatched pairs. 15601 records in RAM.
INFO 2026-06-08 08:56:59 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 0s. Last read position: chr8:143,867,280
INFO 2026-06-08 08:56:59 MarkDuplicates Tracking 590546 as yet unmatched pairs. 15758 records in RAM.
INFO 2026-06-08 08:57:01 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr8:143,917,724
INFO 2026-06-08 08:57:01 MarkDuplicates Tracking 592104 as yet unmatched pairs. 17316 records in RAM.
INFO 2026-06-08 08:57:02 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr8:143,920,686
INFO 2026-06-08 08:57:02 MarkDuplicates Tracking 587211 as yet unmatched pairs. 12422 records in RAM.
INFO 2026-06-08 08:57:04 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr8:143,923,639
INFO 2026-06-08 08:57:04 MarkDuplicates Tracking 584205 as yet unmatched pairs. 9415 records in RAM.
INFO 2026-06-08 08:57:05 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr8:143,929,943
INFO 2026-06-08 08:57:05 MarkDuplicates Tracking 585047 as yet unmatched pairs. 10257 records in RAM.
INFO 2026-06-08 08:57:07 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr8:143,983,516
INFO 2026-06-08 08:57:07 MarkDuplicates Tracking 579039 as yet unmatched pairs. 4249 records in RAM.
INFO 2026-06-08 08:57:09 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr8:144,392,827
INFO 2026-06-08 08:57:09 MarkDuplicates Tracking 576836 as yet unmatched pairs. 2046 records in RAM.
INFO 2026-06-08 08:57:11 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 2s. Last read position: chr9:711,021
INFO 2026-06-08 08:57:11 MarkDuplicates Tracking 575048 as yet unmatched pairs. 31285 records in RAM.
INFO 2026-06-08 08:57:12 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr9:19,450,456
INFO 2026-06-08 08:57:12 MarkDuplicates Tracking 573272 as yet unmatched pairs. 29500 records in RAM.
INFO 2026-06-08 08:57:14 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr9:34,402,457
INFO 2026-06-08 08:57:14 MarkDuplicates Tracking 571598 as yet unmatched pairs. 27826 records in RAM.
INFO 2026-06-08 08:57:15 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr9:35,719,076
INFO 2026-06-08 08:57:15 MarkDuplicates Tracking 570128 as yet unmatched pairs. 26356 records in RAM.
INFO 2026-06-08 08:57:17 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr9:68,271,602
INFO 2026-06-08 08:57:17 MarkDuplicates Tracking 568441 as yet unmatched pairs. 24661 records in RAM.
INFO 2026-06-08 08:57:18 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr9:81,687,382
INFO 2026-06-08 08:57:18 MarkDuplicates Tracking 566987 as yet unmatched pairs. 23189 records in RAM.
INFO 2026-06-08 08:57:20 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr9:92,089,088
INFO 2026-06-08 08:57:20 MarkDuplicates Tracking 565510 as yet unmatched pairs. 21702 records in RAM.
INFO 2026-06-08 08:57:21 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr9:97,998,581
INFO 2026-06-08 08:57:21 MarkDuplicates Tracking 564709 as yet unmatched pairs. 20900 records in RAM.
INFO 2026-06-08 08:57:23 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr9:109,048,809
INFO 2026-06-08 08:57:23 MarkDuplicates Tracking 562350 as yet unmatched pairs. 18540 records in RAM.
INFO 2026-06-08 08:57:24 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr9:114,341,707
INFO 2026-06-08 08:57:24 MarkDuplicates Tracking 560913 as yet unmatched pairs. 17103 records in RAM.
INFO 2026-06-08 08:57:26 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr9:120,865,710
INFO 2026-06-08 08:57:26 MarkDuplicates Tracking 559101 as yet unmatched pairs. 15289 records in RAM.
INFO 2026-06-08 08:57:27 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr9:125,220,672
INFO 2026-06-08 08:57:27 MarkDuplicates Tracking 557687 as yet unmatched pairs. 13859 records in RAM.
INFO 2026-06-08 08:57:30 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 2s. Last read position: chr9:127,872,744
INFO 2026-06-08 08:57:30 MarkDuplicates Tracking 556180 as yet unmatched pairs. 12351 records in RAM.
INFO 2026-06-08 08:57:31 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr9:128,607,853
INFO 2026-06-08 08:57:31 MarkDuplicates Tracking 554473 as yet unmatched pairs. 10643 records in RAM.
INFO 2026-06-08 08:57:33 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr9:129,880,205
INFO 2026-06-08 08:57:33 MarkDuplicates Tracking 552682 as yet unmatched pairs. 8852 records in RAM.
INFO 2026-06-08 08:57:34 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr9:131,588,838
INFO 2026-06-08 08:57:34 MarkDuplicates Tracking 551284 as yet unmatched pairs. 7453 records in RAM.
INFO 2026-06-08 08:57:36 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr9:134,728,685
INFO 2026-06-08 08:57:36 MarkDuplicates Tracking 549523 as yet unmatched pairs. 5692 records in RAM.
INFO 2026-06-08 08:57:37 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr9:136,474,758
INFO 2026-06-08 08:57:37 MarkDuplicates Tracking 548147 as yet unmatched pairs. 4315 records in RAM.
INFO 2026-06-08 08:57:39 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr9:137,051,510
INFO 2026-06-08 08:57:39 MarkDuplicates Tracking 545784 as yet unmatched pairs. 1951 records in RAM.
INFO 2026-06-08 08:57:41 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 2s. Last read position: chr10:246,809
INFO 2026-06-08 08:57:41 MarkDuplicates Tracking 543906 as yet unmatched pairs. 33190 records in RAM.
INFO 2026-06-08 08:57:43 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr10:5,917,448
INFO 2026-06-08 08:57:43 MarkDuplicates Tracking 542592 as yet unmatched pairs. 31876 records in RAM.
INFO 2026-06-08 08:57:45 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr10:17,866,581
INFO 2026-06-08 08:57:45 MarkDuplicates Tracking 540585 as yet unmatched pairs. 29854 records in RAM.
INFO 2026-06-08 08:57:47 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 2s. Last read position: chr10:28,583,367
INFO 2026-06-08 08:57:47 MarkDuplicates Tracking 539188 as yet unmatched pairs. 28456 records in RAM.
INFO 2026-06-08 08:57:49 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr10:32,022,897
INFO 2026-06-08 08:57:49 MarkDuplicates Tracking 539712 as yet unmatched pairs. 28978 records in RAM.
INFO 2026-06-08 08:57:50 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr10:32,929,923
INFO 2026-06-08 08:57:50 MarkDuplicates Tracking 538779 as yet unmatched pairs. 28045 records in RAM.
INFO 2026-06-08 08:57:51 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr10:45,826,316
INFO 2026-06-08 08:57:51 MarkDuplicates Tracking 535345 as yet unmatched pairs. 24611 records in RAM.
INFO 2026-06-08 08:57:53 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr10:50,991,473
INFO 2026-06-08 08:57:53 MarkDuplicates Tracking 534229 as yet unmatched pairs. 23495 records in RAM.
INFO 2026-06-08 08:57:55 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr10:68,941,155
INFO 2026-06-08 08:57:55 MarkDuplicates Tracking 532919 as yet unmatched pairs. 22184 records in RAM.
INFO 2026-06-08 08:57:56 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr10:72,340,774
INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 531211 as yet unmatched pairs. 20475 records in RAM.
INFO 2026-06-08 08:57:58 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr10:74,074,856
INFO 2026-06-08 08:57:58 MarkDuplicates Tracking 530254 as yet unmatched pairs. 19518 records in RAM.
INFO 2026-06-08 08:57:59 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr10:78,054,643
INFO 2026-06-08 08:57:59 MarkDuplicates Tracking 528268 as yet unmatched pairs. 17532 records in RAM.
INFO 2026-06-08 08:58:01 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr10:87,009,237
INFO 2026-06-08 08:58:01 MarkDuplicates Tracking 527072 as yet unmatched pairs. 16336 records in RAM.
INFO 2026-06-08 08:58:02 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr10:92,008,137
INFO 2026-06-08 08:58:02 MarkDuplicates Tracking 525546 as yet unmatched pairs. 14808 records in RAM.
INFO 2026-06-08 08:58:04 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr10:95,318,407
INFO 2026-06-08 08:58:04 MarkDuplicates Tracking 523982 as yet unmatched pairs. 13243 records in RAM.
INFO 2026-06-08 08:58:06 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr10:97,757,264
INFO 2026-06-08 08:58:06 MarkDuplicates Tracking 522469 as yet unmatched pairs. 11721 records in RAM.
INFO 2026-06-08 08:58:08 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr10:101,800,289
INFO 2026-06-08 08:58:08 MarkDuplicates Tracking 521158 as yet unmatched pairs. 10410 records in RAM.
INFO 2026-06-08 08:58:09 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr10:103,427,335
INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 519163 as yet unmatched pairs. 8415 records in RAM.
INFO 2026-06-08 08:58:11 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr10:104,053,126
INFO 2026-06-08 08:58:11 MarkDuplicates Tracking 518898 as yet unmatched pairs. 8150 records in RAM.
INFO 2026-06-08 08:58:12 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr10:112,411,900
INFO 2026-06-08 08:58:12 MarkDuplicates Tracking 517250 as yet unmatched pairs. 6496 records in RAM.
INFO 2026-06-08 08:58:14 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr10:119,042,219
INFO 2026-06-08 08:58:14 MarkDuplicates Tracking 514892 as yet unmatched pairs. 4138 records in RAM.
INFO 2026-06-08 08:58:16 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr10:123,160,436
INFO 2026-06-08 08:58:16 MarkDuplicates Tracking 513367 as yet unmatched pairs. 2609 records in RAM.
INFO 2026-06-08 08:58:18 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr10:132,406,016
INFO 2026-06-08 08:58:18 MarkDuplicates Tracking 511959 as yet unmatched pairs. 1201 records in RAM.
INFO 2026-06-08 08:58:20 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 2s. Last read position: chr11:319,856
INFO 2026-06-08 08:58:20 MarkDuplicates Tracking 512798 as yet unmatched pairs. 64945 records in RAM.
INFO 2026-06-08 08:58:21 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr11:609,582
INFO 2026-06-08 08:58:21 MarkDuplicates Tracking 508076 as yet unmatched pairs. 60223 records in RAM.
INFO 2026-06-08 08:58:23 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr11:838,135
INFO 2026-06-08 08:58:23 MarkDuplicates Tracking 507300 as yet unmatched pairs. 59447 records in RAM.
INFO 2026-06-08 08:58:24 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr11:1,187,846
INFO 2026-06-08 08:58:24 MarkDuplicates Tracking 505178 as yet unmatched pairs. 57325 records in RAM.
INFO 2026-06-08 08:58:26 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,905
INFO 2026-06-08 08:58:26 MarkDuplicates Tracking 504353 as yet unmatched pairs. 56499 records in RAM.
INFO 2026-06-08 08:58:27 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr11:1,251,733
INFO 2026-06-08 08:58:27 MarkDuplicates Tracking 502754 as yet unmatched pairs. 54899 records in RAM.
INFO 2026-06-08 08:58:28 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr11:2,917,996
INFO 2026-06-08 08:58:28 MarkDuplicates Tracking 501841 as yet unmatched pairs. 53986 records in RAM.
INFO 2026-06-08 08:58:30 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr11:6,609,353
INFO 2026-06-08 08:58:30 MarkDuplicates Tracking 499635 as yet unmatched pairs. 51780 records in RAM.
INFO 2026-06-08 08:58:32 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr11:10,001,008
INFO 2026-06-08 08:58:32 MarkDuplicates Tracking 498136 as yet unmatched pairs. 50281 records in RAM.
INFO 2026-06-08 08:58:34 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 2s. Last read position: chr11:13,419,703
INFO 2026-06-08 08:58:34 MarkDuplicates Tracking 495957 as yet unmatched pairs. 48088 records in RAM.
INFO 2026-06-08 08:58:36 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr11:18,616,885
INFO 2026-06-08 08:58:36 MarkDuplicates Tracking 494396 as yet unmatched pairs. 46524 records in RAM.
INFO 2026-06-08 08:58:37 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr11:34,113,754
INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 493151 as yet unmatched pairs. 45279 records in RAM.
INFO 2026-06-08 08:58:39 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr11:46,311,048
INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 491620 as yet unmatched pairs. 43748 records in RAM.
INFO 2026-06-08 08:58:40 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr11:47,414,849
INFO 2026-06-08 08:58:40 MarkDuplicates Tracking 490379 as yet unmatched pairs. 42507 records in RAM.
INFO 2026-06-08 08:58:42 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr11:57,699,408
INFO 2026-06-08 08:58:42 MarkDuplicates Tracking 488603 as yet unmatched pairs. 40731 records in RAM.
INFO 2026-06-08 08:58:43 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr11:60,936,596
INFO 2026-06-08 08:58:43 MarkDuplicates Tracking 487025 as yet unmatched pairs. 39153 records in RAM.
INFO 2026-06-08 08:58:45 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr11:61,967,344
INFO 2026-06-08 08:58:45 MarkDuplicates Tracking 487434 as yet unmatched pairs. 39558 records in RAM.
INFO 2026-06-08 08:58:46 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr11:62,523,188
INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 485726 as yet unmatched pairs. 37849 records in RAM.
INFO 2026-06-08 08:58:48 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr11:62,530,019
INFO 2026-06-08 08:58:48 MarkDuplicates Tracking 484889 as yet unmatched pairs. 37011 records in RAM.
INFO 2026-06-08 08:58:50 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr11:62,615,696
INFO 2026-06-08 08:58:50 MarkDuplicates Tracking 481945 as yet unmatched pairs. 34067 records in RAM.
INFO 2026-06-08 08:58:52 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 2s. Last read position: chr11:63,976,259
INFO 2026-06-08 08:58:52 MarkDuplicates Tracking 481559 as yet unmatched pairs. 33681 records in RAM.
INFO 2026-06-08 08:58:53 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr11:64,767,044
INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 478893 as yet unmatched pairs. 31009 records in RAM.
INFO 2026-06-08 08:58:55 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr11:65,183,573
INFO 2026-06-08 08:58:55 MarkDuplicates Tracking 477019 as yet unmatched pairs. 29135 records in RAM.
INFO 2026-06-08 08:58:56 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr11:65,582,390
INFO 2026-06-08 08:58:56 MarkDuplicates Tracking 474625 as yet unmatched pairs. 26741 records in RAM.
INFO 2026-06-08 08:58:58 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr11:65,855,674
INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 473884 as yet unmatched pairs. 26000 records in RAM.
INFO 2026-06-08 08:58:59 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr11:66,476,112
INFO 2026-06-08 08:58:59 MarkDuplicates Tracking 470707 as yet unmatched pairs. 22823 records in RAM.
INFO 2026-06-08 08:59:01 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:67,289,486
INFO 2026-06-08 08:59:01 MarkDuplicates Tracking 469116 as yet unmatched pairs. 21232 records in RAM.
INFO 2026-06-08 08:59:02 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr11:68,018,554
INFO 2026-06-08 08:59:02 MarkDuplicates Tracking 467107 as yet unmatched pairs. 19223 records in RAM.
INFO 2026-06-08 08:59:04 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr11:69,295,832
INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 465645 as yet unmatched pairs. 17759 records in RAM.
INFO 2026-06-08 08:59:06 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr11:71,109,968
INFO 2026-06-08 08:59:06 MarkDuplicates Tracking 463722 as yet unmatched pairs. 15836 records in RAM.
INFO 2026-06-08 08:59:07 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr11:73,234,156
INFO 2026-06-08 08:59:07 MarkDuplicates Tracking 461754 as yet unmatched pairs. 13868 records in RAM.
INFO 2026-06-08 08:59:09 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr11:76,513,504
INFO 2026-06-08 08:59:09 MarkDuplicates Tracking 460208 as yet unmatched pairs. 12322 records in RAM.
INFO 2026-06-08 08:59:10 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr11:86,951,160
INFO 2026-06-08 08:59:10 MarkDuplicates Tracking 458651 as yet unmatched pairs. 10765 records in RAM.
INFO 2026-06-08 08:59:12 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:102,229,730
INFO 2026-06-08 08:59:12 MarkDuplicates Tracking 458031 as yet unmatched pairs. 10144 records in RAM.
INFO 2026-06-08 08:59:13 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr11:114,312,415
INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 455622 as yet unmatched pairs. 7735 records in RAM.
INFO 2026-06-08 08:59:15 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:118,488,735
INFO 2026-06-08 08:59:15 MarkDuplicates Tracking 454117 as yet unmatched pairs. 6229 records in RAM.
INFO 2026-06-08 08:59:16 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:119,017,461
INFO 2026-06-08 08:59:16 MarkDuplicates Tracking 453368 as yet unmatched pairs. 5479 records in RAM.
INFO 2026-06-08 08:59:18 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr11:121,570,227
INFO 2026-06-08 08:59:18 MarkDuplicates Tracking 451158 as yet unmatched pairs. 3269 records in RAM.
INFO 2026-06-08 08:59:20 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:128,969,079
INFO 2026-06-08 08:59:20 MarkDuplicates Tracking 449795 as yet unmatched pairs. 1906 records in RAM.
INFO 2026-06-08 08:59:22 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr11:134,370,303
INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 448017 as yet unmatched pairs. 123 records in RAM.
INFO 2026-06-08 08:59:23 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr12:2,858,851
INFO 2026-06-08 08:59:23 MarkDuplicates Tracking 446495 as yet unmatched pairs. 52948 records in RAM.
INFO 2026-06-08 08:59:25 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr12:6,384,593
INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 445208 as yet unmatched pairs. 51660 records in RAM.
INFO 2026-06-08 08:59:27 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr12:6,868,985
INFO 2026-06-08 08:59:27 MarkDuplicates Tracking 443925 as yet unmatched pairs. 50373 records in RAM.
INFO 2026-06-08 08:59:28 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr12:8,039,967
INFO 2026-06-08 08:59:28 MarkDuplicates Tracking 441921 as yet unmatched pairs. 48369 records in RAM.
INFO 2026-06-08 08:59:30 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr12:12,480,282
INFO 2026-06-08 08:59:30 MarkDuplicates Tracking 440722 as yet unmatched pairs. 47170 records in RAM.
INFO 2026-06-08 08:59:31 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr12:15,669,681
INFO 2026-06-08 08:59:31 MarkDuplicates Tracking 439514 as yet unmatched pairs. 45962 records in RAM.
INFO 2026-06-08 08:59:33 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr12:30,713,869
INFO 2026-06-08 08:59:33 MarkDuplicates Tracking 438109 as yet unmatched pairs. 44555 records in RAM.
INFO 2026-06-08 08:59:34 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr12:46,197,794
INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 436740 as yet unmatched pairs. 43186 records in RAM.
INFO 2026-06-08 08:59:36 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr12:49,029,147
INFO 2026-06-08 08:59:36 MarkDuplicates Tracking 435124 as yet unmatched pairs. 41569 records in RAM.
INFO 2026-06-08 08:59:37 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr12:49,129,341
INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 434593 as yet unmatched pairs. 41038 records in RAM.
INFO 2026-06-08 08:59:39 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr12:50,192,506
INFO 2026-06-08 08:59:39 MarkDuplicates Tracking 433582 as yet unmatched pairs. 40027 records in RAM.
INFO 2026-06-08 08:59:41 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr12:52,448,933
INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 431358 as yet unmatched pairs. 37803 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr12:52,904,693
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 435741 as yet unmatched pairs. 42186 records in RAM.
INFO 2026-06-08 08:59:44 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr12:52,952,243
INFO 2026-06-08 08:59:44 MarkDuplicates Tracking 433280 as yet unmatched pairs. 39725 records in RAM.
INFO 2026-06-08 08:59:46 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr12:53,443,747
INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 427231 as yet unmatched pairs. 33675 records in RAM.
INFO 2026-06-08 08:59:47 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr12:54,347,999
INFO 2026-06-08 08:59:47 MarkDuplicates Tracking 426161 as yet unmatched pairs. 32604 records in RAM.
INFO 2026-06-08 08:59:49 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr12:56,095,706
INFO 2026-06-08 08:59:49 MarkDuplicates Tracking 423941 as yet unmatched pairs. 30382 records in RAM.
INFO 2026-06-08 08:59:50 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr12:56,323,120
INFO 2026-06-08 08:59:50 MarkDuplicates Tracking 422299 as yet unmatched pairs. 28740 records in RAM.
INFO 2026-06-08 08:59:52 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr12:56,714,636
INFO 2026-06-08 08:59:52 MarkDuplicates Tracking 423128 as yet unmatched pairs. 29569 records in RAM.
INFO 2026-06-08 08:59:54 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr12:57,166,906
INFO 2026-06-08 08:59:54 MarkDuplicates Tracking 420038 as yet unmatched pairs. 26479 records in RAM.
INFO 2026-06-08 08:59:55 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr12:57,532,753
INFO 2026-06-08 08:59:55 MarkDuplicates Tracking 418330 as yet unmatched pairs. 24771 records in RAM.
INFO 2026-06-08 08:59:57 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr12:65,243,444
INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 416273 as yet unmatched pairs. 22714 records in RAM.
INFO 2026-06-08 08:59:58 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr12:71,132,786
INFO 2026-06-08 08:59:58 MarkDuplicates Tracking 416481 as yet unmatched pairs. 22922 records in RAM.
INFO 2026-06-08 09:00:00 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr12:79,820,853
INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 413546 as yet unmatched pairs. 19986 records in RAM.
INFO 2026-06-08 09:00:02 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 2s. Last read position: chr12:95,209,551
INFO 2026-06-08 09:00:02 MarkDuplicates Tracking 412113 as yet unmatched pairs. 18553 records in RAM.
INFO 2026-06-08 09:00:03 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr12:103,942,568
INFO 2026-06-08 09:00:03 MarkDuplicates Tracking 411157 as yet unmatched pairs. 17591 records in RAM.
INFO 2026-06-08 09:00:05 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr12:108,702,855
INFO 2026-06-08 09:00:05 MarkDuplicates Tracking 409161 as yet unmatched pairs. 15582 records in RAM.
INFO 2026-06-08 09:00:06 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr12:111,681,747
INFO 2026-06-08 09:00:06 MarkDuplicates Tracking 407737 as yet unmatched pairs. 14149 records in RAM.
INFO 2026-06-08 09:00:08 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr12:112,944,533
INFO 2026-06-08 09:00:08 MarkDuplicates Tracking 407379 as yet unmatched pairs. 13791 records in RAM.
INFO 2026-06-08 09:00:10 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr12:118,036,401
INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 405727 as yet unmatched pairs. 12139 records in RAM.
INFO 2026-06-08 09:00:11 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr12:120,212,384
INFO 2026-06-08 09:00:11 MarkDuplicates Tracking 403847 as yet unmatched pairs. 10259 records in RAM.
INFO 2026-06-08 09:00:13 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr12:121,417,721
INFO 2026-06-08 09:00:13 MarkDuplicates Tracking 401813 as yet unmatched pairs. 8225 records in RAM.
INFO 2026-06-08 09:00:15 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr12:122,702,293
INFO 2026-06-08 09:00:15 MarkDuplicates Tracking 400299 as yet unmatched pairs. 6711 records in RAM.
INFO 2026-06-08 09:00:16 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr12:124,334,464
INFO 2026-06-08 09:00:16 MarkDuplicates Tracking 398918 as yet unmatched pairs. 5329 records in RAM.
INFO 2026-06-08 09:00:18 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr12:124,495,163
INFO 2026-06-08 09:00:18 MarkDuplicates Tracking 397339 as yet unmatched pairs. 3750 records in RAM.
INFO 2026-06-08 09:00:19 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr12:132,104,619
INFO 2026-06-08 09:00:19 MarkDuplicates Tracking 395385 as yet unmatched pairs. 1796 records in RAM.
INFO 2026-06-08 09:00:21 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr13:19,646,976
INFO 2026-06-08 09:00:21 MarkDuplicates Tracking 393572 as yet unmatched pairs. 16485 records in RAM.
INFO 2026-06-08 09:00:22 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr13:23,354,736
INFO 2026-06-08 09:00:22 MarkDuplicates Tracking 392311 as yet unmatched pairs. 15224 records in RAM.
INFO 2026-06-08 09:00:24 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr13:28,138,875
INFO 2026-06-08 09:00:24 MarkDuplicates Tracking 392702 as yet unmatched pairs. 15598 records in RAM.
INFO 2026-06-08 09:00:25 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr13:39,013,560
INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 390385 as yet unmatched pairs. 13266 records in RAM.
INFO 2026-06-08 09:00:27 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr13:45,337,192
INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 389728 as yet unmatched pairs. 12609 records in RAM.
INFO 2026-06-08 09:00:29 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr13:49,198,093
INFO 2026-06-08 09:00:29 MarkDuplicates Tracking 387236 as yet unmatched pairs. 10117 records in RAM.
INFO 2026-06-08 09:00:30 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr13:75,526,521
INFO 2026-06-08 09:00:30 MarkDuplicates Tracking 386579 as yet unmatched pairs. 9455 records in RAM.
INFO 2026-06-08 09:00:32 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 2s. Last read position: chr13:77,267,841
INFO 2026-06-08 09:00:32 MarkDuplicates Tracking 384502 as yet unmatched pairs. 7378 records in RAM.
INFO 2026-06-08 09:00:34 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr13:98,576,616
INFO 2026-06-08 09:00:34 MarkDuplicates Tracking 383116 as yet unmatched pairs. 5975 records in RAM.
INFO 2026-06-08 09:00:36 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr13:109,784,877
INFO 2026-06-08 09:00:36 MarkDuplicates Tracking 380927 as yet unmatched pairs. 3786 records in RAM.
INFO 2026-06-08 09:00:37 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr13:110,627,518
INFO 2026-06-08 09:00:37 MarkDuplicates Tracking 379575 as yet unmatched pairs. 2434 records in RAM.
INFO 2026-06-08 09:00:39 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr13:113,996,531
INFO 2026-06-08 09:00:39 MarkDuplicates Tracking 377510 as yet unmatched pairs. 368 records in RAM.
INFO 2026-06-08 09:00:40 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr14:21,430,821
INFO 2026-06-08 09:00:40 MarkDuplicates Tracking 375924 as yet unmatched pairs. 30952 records in RAM.
INFO 2026-06-08 09:00:42 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr14:23,094,986
INFO 2026-06-08 09:00:42 MarkDuplicates Tracking 374438 as yet unmatched pairs. 29466 records in RAM.
INFO 2026-06-08 09:00:44 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr14:24,292,204
INFO 2026-06-08 09:00:44 MarkDuplicates Tracking 372842 as yet unmatched pairs. 27870 records in RAM.
INFO 2026-06-08 09:00:45 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr14:34,764,843
INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 371282 as yet unmatched pairs. 26310 records in RAM.
INFO 2026-06-08 09:00:46 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,578
INFO 2026-06-08 09:00:46 MarkDuplicates Tracking 370859 as yet unmatched pairs. 25886 records in RAM.
INFO 2026-06-08 09:00:48 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr14:55,138,236
INFO 2026-06-08 09:00:48 MarkDuplicates Tracking 369309 as yet unmatched pairs. 24335 records in RAM.
INFO 2026-06-08 09:00:50 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr14:63,954,719
INFO 2026-06-08 09:00:50 MarkDuplicates Tracking 367097 as yet unmatched pairs. 22122 records in RAM.
INFO 2026-06-08 09:00:52 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 2s. Last read position: chr14:67,359,681
INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 365348 as yet unmatched pairs. 20370 records in RAM.
INFO 2026-06-08 09:00:54 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 2s. Last read position: chr14:69,885,912
INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 363760 as yet unmatched pairs. 18782 records in RAM.
INFO 2026-06-08 09:00:56 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr14:74,509,233
INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 362534 as yet unmatched pairs. 17555 records in RAM.
INFO 2026-06-08 09:00:58 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr14:79,861,711
INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 360826 as yet unmatched pairs. 15847 records in RAM.
INFO 2026-06-08 09:00:59 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr14:93,294,816
INFO 2026-06-08 09:00:59 MarkDuplicates Tracking 359446 as yet unmatched pairs. 14467 records in RAM.
INFO 2026-06-08 09:01:01 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr14:100,346,834
INFO 2026-06-08 09:01:01 MarkDuplicates Tracking 358029 as yet unmatched pairs. 13044 records in RAM.
INFO 2026-06-08 09:01:03 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr14:102,085,757
INFO 2026-06-08 09:01:03 MarkDuplicates Tracking 356639 as yet unmatched pairs. 11654 records in RAM.
INFO 2026-06-08 09:01:05 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr14:103,732,677
INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 354708 as yet unmatched pairs. 9723 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr14:104,887,570
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 353386 as yet unmatched pairs. 8401 records in RAM.
INFO 2026-06-08 09:01:08 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr14:104,942,910
INFO 2026-06-08 09:01:08 MarkDuplicates Tracking 356305 as yet unmatched pairs. 11320 records in RAM.
INFO 2026-06-08 09:01:10 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr14:104,946,049
INFO 2026-06-08 09:01:10 MarkDuplicates Tracking 356368 as yet unmatched pairs. 11383 records in RAM.
INFO 2026-06-08 09:01:11 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr14:104,949,749
INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 357416 as yet unmatched pairs. 12431 records in RAM.
INFO 2026-06-08 09:01:13 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr14:104,954,549
INFO 2026-06-08 09:01:13 MarkDuplicates Tracking 348375 as yet unmatched pairs. 3390 records in RAM.
INFO 2026-06-08 09:01:15 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,828
INFO 2026-06-08 09:01:15 MarkDuplicates Tracking 347179 as yet unmatched pairs. 2194 records in RAM.
INFO 2026-06-08 09:01:17 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,064
INFO 2026-06-08 09:01:17 MarkDuplicates Tracking 348881 as yet unmatched pairs. 3896 records in RAM.
INFO 2026-06-08 09:01:18 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr15:22,916,600
INFO 2026-06-08 09:01:18 MarkDuplicates Tracking 344803 as yet unmatched pairs. 31138 records in RAM.
INFO 2026-06-08 09:01:20 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr15:32,528,538
INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 343253 as yet unmatched pairs. 29587 records in RAM.
INFO 2026-06-08 09:01:22 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr15:34,365,218
INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 342502 as yet unmatched pairs. 28836 records in RAM.
INFO 2026-06-08 09:01:24 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr15:40,217,657
INFO 2026-06-08 09:01:24 MarkDuplicates Tracking 340605 as yet unmatched pairs. 26938 records in RAM.
INFO 2026-06-08 09:01:26 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr15:41,536,625
INFO 2026-06-08 09:01:26 MarkDuplicates Tracking 338994 as yet unmatched pairs. 25327 records in RAM.
INFO 2026-06-08 09:01:28 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 2s. Last read position: chr15:43,457,067
INFO 2026-06-08 09:01:28 MarkDuplicates Tracking 337565 as yet unmatched pairs. 23898 records in RAM.
INFO 2026-06-08 09:01:30 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 2s. Last read position: chr15:44,560,250
INFO 2026-06-08 09:01:30 MarkDuplicates Tracking 336548 as yet unmatched pairs. 22880 records in RAM.
INFO 2026-06-08 09:01:32 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr15:48,996,574
INFO 2026-06-08 09:01:32 MarkDuplicates Tracking 334637 as yet unmatched pairs. 20969 records in RAM.
INFO 2026-06-08 09:01:34 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr15:57,197,801
INFO 2026-06-08 09:01:34 MarkDuplicates Tracking 333655 as yet unmatched pairs. 19986 records in RAM.
INFO 2026-06-08 09:01:35 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr15:60,352,397
INFO 2026-06-08 09:01:35 MarkDuplicates Tracking 335344 as yet unmatched pairs. 21675 records in RAM.
INFO 2026-06-08 09:01:37 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr15:63,600,745
INFO 2026-06-08 09:01:37 MarkDuplicates Tracking 330052 as yet unmatched pairs. 16383 records in RAM.
INFO 2026-06-08 09:01:38 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr15:66,485,087
INFO 2026-06-08 09:01:38 MarkDuplicates Tracking 329292 as yet unmatched pairs. 15623 records in RAM.
INFO 2026-06-08 09:01:40 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr15:70,667,654
INFO 2026-06-08 09:01:40 MarkDuplicates Tracking 327102 as yet unmatched pairs. 13433 records in RAM.
INFO 2026-06-08 09:01:41 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr15:73,699,687
INFO 2026-06-08 09:01:41 MarkDuplicates Tracking 326021 as yet unmatched pairs. 12352 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr15:74,929,197
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 324022 as yet unmatched pairs. 10353 records in RAM.
INFO 2026-06-08 09:01:44 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr15:77,056,118
INFO 2026-06-08 09:01:44 MarkDuplicates Tracking 322288 as yet unmatched pairs. 8619 records in RAM.
INFO 2026-06-08 09:01:46 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr15:82,524,123
INFO 2026-06-08 09:01:46 MarkDuplicates Tracking 319935 as yet unmatched pairs. 6263 records in RAM.
INFO 2026-06-08 09:01:47 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr15:88,856,353
INFO 2026-06-08 09:01:47 MarkDuplicates Tracking 318542 as yet unmatched pairs. 4870 records in RAM.
INFO 2026-06-08 09:01:49 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr15:90,232,383
INFO 2026-06-08 09:01:49 MarkDuplicates Tracking 317098 as yet unmatched pairs. 3426 records in RAM.
INFO 2026-06-08 09:01:50 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr15:94,340,858
INFO 2026-06-08 09:01:50 MarkDuplicates Tracking 315594 as yet unmatched pairs. 1922 records in RAM.
INFO 2026-06-08 09:01:52 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr15:101,974,234
INFO 2026-06-08 09:01:52 MarkDuplicates Tracking 313697 as yet unmatched pairs. 24 records in RAM.
INFO 2026-06-08 09:01:54 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr16:574,146
INFO 2026-06-08 09:01:54 MarkDuplicates Tracking 312278 as yet unmatched pairs. 54789 records in RAM.
INFO 2026-06-08 09:01:56 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 2s. Last read position: chr16:790,576
INFO 2026-06-08 09:01:56 MarkDuplicates Tracking 309336 as yet unmatched pairs. 51847 records in RAM.
INFO 2026-06-08 09:01:58 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 2s. Last read position: chr16:1,787,717
INFO 2026-06-08 09:01:58 MarkDuplicates Tracking 307714 as yet unmatched pairs. 50218 records in RAM.
INFO 2026-06-08 09:02:00 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr16:2,114,886
INFO 2026-06-08 09:02:00 MarkDuplicates Tracking 305431 as yet unmatched pairs. 47934 records in RAM.
INFO 2026-06-08 09:02:01 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr16:2,762,911
INFO 2026-06-08 09:02:01 MarkDuplicates Tracking 304567 as yet unmatched pairs. 47070 records in RAM.
INFO 2026-06-08 09:02:03 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr16:3,020,420
INFO 2026-06-08 09:02:03 MarkDuplicates Tracking 303399 as yet unmatched pairs. 45902 records in RAM.
INFO 2026-06-08 09:02:04 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr16:3,909,389
INFO 2026-06-08 09:02:04 MarkDuplicates Tracking 300414 as yet unmatched pairs. 42917 records in RAM.
INFO 2026-06-08 09:02:06 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr16:5,559,888
INFO 2026-06-08 09:02:06 MarkDuplicates Tracking 298549 as yet unmatched pairs. 41052 records in RAM.
INFO 2026-06-08 09:02:07 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr16:14,750,845
INFO 2026-06-08 09:02:07 MarkDuplicates Tracking 297170 as yet unmatched pairs. 39666 records in RAM.
INFO 2026-06-08 09:02:08 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr16:15,617,418
INFO 2026-06-08 09:02:08 MarkDuplicates Tracking 296249 as yet unmatched pairs. 38745 records in RAM.
INFO 2026-06-08 09:02:10 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr16:15,782,434
INFO 2026-06-08 09:02:10 MarkDuplicates Tracking 295851 as yet unmatched pairs. 38347 records in RAM.
INFO 2026-06-08 09:02:11 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr16:16,359,966
INFO 2026-06-08 09:02:11 MarkDuplicates Tracking 294072 as yet unmatched pairs. 36568 records in RAM.
INFO 2026-06-08 09:02:12 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr16:18,418,464
INFO 2026-06-08 09:02:12 MarkDuplicates Tracking 293122 as yet unmatched pairs. 35618 records in RAM.
INFO 2026-06-08 09:02:14 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr16:19,564,914
INFO 2026-06-08 09:02:14 MarkDuplicates Tracking 291958 as yet unmatched pairs. 34454 records in RAM.
INFO 2026-06-08 09:02:15 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr16:21,617,996
INFO 2026-06-08 09:02:15 MarkDuplicates Tracking 291551 as yet unmatched pairs. 34047 records in RAM.
INFO 2026-06-08 09:02:16 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr16:22,481,813
INFO 2026-06-08 09:02:16 MarkDuplicates Tracking 290676 as yet unmatched pairs. 33172 records in RAM.
INFO 2026-06-08 09:02:17 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr16:23,706,762
INFO 2026-06-08 09:02:17 MarkDuplicates Tracking 290158 as yet unmatched pairs. 32654 records in RAM.
INFO 2026-06-08 09:02:19 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr16:28,606,832
INFO 2026-06-08 09:02:19 MarkDuplicates Tracking 288628 as yet unmatched pairs. 31124 records in RAM.
INFO 2026-06-08 09:02:20 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr16:29,384,175
INFO 2026-06-08 09:02:20 MarkDuplicates Tracking 287633 as yet unmatched pairs. 30129 records in RAM.
INFO 2026-06-08 09:02:22 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr16:29,810,288
INFO 2026-06-08 09:02:22 MarkDuplicates Tracking 287191 as yet unmatched pairs. 29687 records in RAM.
INFO 2026-06-08 09:02:24 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 2s. Last read position: chr16:30,070,014
INFO 2026-06-08 09:02:24 MarkDuplicates Tracking 286370 as yet unmatched pairs. 28866 records in RAM.
INFO 2026-06-08 09:02:26 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr16:30,359,259
INFO 2026-06-08 09:02:26 MarkDuplicates Tracking 283672 as yet unmatched pairs. 26168 records in RAM.
INFO 2026-06-08 09:02:27 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr16:30,969,437
INFO 2026-06-08 09:02:27 MarkDuplicates Tracking 281951 as yet unmatched pairs. 24447 records in RAM.
INFO 2026-06-08 09:02:28 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr16:46,671,798
INFO 2026-06-08 09:02:28 MarkDuplicates Tracking 280622 as yet unmatched pairs. 23117 records in RAM.
INFO 2026-06-08 09:02:30 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr16:53,704,129
INFO 2026-06-08 09:02:30 MarkDuplicates Tracking 278870 as yet unmatched pairs. 21364 records in RAM.
INFO 2026-06-08 09:02:32 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr16:57,067,805
INFO 2026-06-08 09:02:32 MarkDuplicates Tracking 278107 as yet unmatched pairs. 20601 records in RAM.
INFO 2026-06-08 09:02:34 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr16:58,518,970
INFO 2026-06-08 09:02:34 MarkDuplicates Tracking 275632 as yet unmatched pairs. 18126 records in RAM.
INFO 2026-06-08 09:02:36 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 2s. Last read position: chr16:67,194,735
INFO 2026-06-08 09:02:36 MarkDuplicates Tracking 274175 as yet unmatched pairs. 16669 records in RAM.
INFO 2026-06-08 09:02:37 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr16:68,038,086
INFO 2026-06-08 09:02:37 MarkDuplicates Tracking 272083 as yet unmatched pairs. 14577 records in RAM.
INFO 2026-06-08 09:02:38 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:69,424,750
INFO 2026-06-08 09:02:38 MarkDuplicates Tracking 271855 as yet unmatched pairs. 14349 records in RAM.
INFO 2026-06-08 09:02:40 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr16:70,538,347
INFO 2026-06-08 09:02:40 MarkDuplicates Tracking 269478 as yet unmatched pairs. 11972 records in RAM.
INFO 2026-06-08 09:02:41 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:74,391,875
INFO 2026-06-08 09:02:41 MarkDuplicates Tracking 267676 as yet unmatched pairs. 10170 records in RAM.
INFO 2026-06-08 09:02:43 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr16:78,115,037
INFO 2026-06-08 09:02:43 MarkDuplicates Tracking 265856 as yet unmatched pairs. 8350 records in RAM.
INFO 2026-06-08 09:02:45 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 2s. Last read position: chr16:85,654,980
INFO 2026-06-08 09:02:45 MarkDuplicates Tracking 264195 as yet unmatched pairs. 6689 records in RAM.
INFO 2026-06-08 09:02:47 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr16:88,643,291
INFO 2026-06-08 09:02:47 MarkDuplicates Tracking 263370 as yet unmatched pairs. 5862 records in RAM.
INFO 2026-06-08 09:02:48 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr16:88,793,550
INFO 2026-06-08 09:02:48 MarkDuplicates Tracking 260466 as yet unmatched pairs. 2958 records in RAM.
INFO 2026-06-08 09:02:50 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr16:89,649,388
INFO 2026-06-08 09:02:50 MarkDuplicates Tracking 259486 as yet unmatched pairs. 1978 records in RAM.
INFO 2026-06-08 09:02:52 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 2s. Last read position: chr17:1,345,489
INFO 2026-06-08 09:02:52 MarkDuplicates Tracking 258971 as yet unmatched pairs. 77322 records in RAM.
INFO 2026-06-08 09:02:54 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr17:2,057,974
INFO 2026-06-08 09:02:54 MarkDuplicates Tracking 255463 as yet unmatched pairs. 73814 records in RAM.
INFO 2026-06-08 09:02:56 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 2s. Last read position: chr17:4,539,923
INFO 2026-06-08 09:02:56 MarkDuplicates Tracking 253964 as yet unmatched pairs. 72315 records in RAM.
INFO 2026-06-08 09:02:58 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr17:5,023,728
INFO 2026-06-08 09:02:58 MarkDuplicates Tracking 252453 as yet unmatched pairs. 70804 records in RAM.
INFO 2026-06-08 09:02:59 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr17:7,312,225
INFO 2026-06-08 09:02:59 MarkDuplicates Tracking 252715 as yet unmatched pairs. 71066 records in RAM.
INFO 2026-06-08 09:03:01 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr17:7,581,409
INFO 2026-06-08 09:03:01 MarkDuplicates Tracking 249551 as yet unmatched pairs. 67902 records in RAM.
INFO 2026-06-08 09:03:02 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr17:9,912,127
INFO 2026-06-08 09:03:02 MarkDuplicates Tracking 247354 as yet unmatched pairs. 65705 records in RAM.
INFO 2026-06-08 09:03:04 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr17:17,158,885
INFO 2026-06-08 09:03:04 MarkDuplicates Tracking 246863 as yet unmatched pairs. 65213 records in RAM.
INFO 2026-06-08 09:03:05 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr17:18,486,115
INFO 2026-06-08 09:03:05 MarkDuplicates Tracking 244170 as yet unmatched pairs. 62520 records in RAM.
INFO 2026-06-08 09:03:07 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr17:28,621,436
INFO 2026-06-08 09:03:07 MarkDuplicates Tracking 243111 as yet unmatched pairs. 61459 records in RAM.
INFO 2026-06-08 09:03:09 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 2s. Last read position: chr17:29,632,388
INFO 2026-06-08 09:03:09 MarkDuplicates Tracking 241348 as yet unmatched pairs. 59696 records in RAM.
INFO 2026-06-08 09:03:11 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr17:35,639,750
INFO 2026-06-08 09:03:11 MarkDuplicates Tracking 239965 as yet unmatched pairs. 58313 records in RAM.
INFO 2026-06-08 09:03:12 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr17:38,185,077
INFO 2026-06-08 09:03:12 MarkDuplicates Tracking 238821 as yet unmatched pairs. 57169 records in RAM.
INFO 2026-06-08 09:03:14 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr17:39,629,186
INFO 2026-06-08 09:03:14 MarkDuplicates Tracking 237525 as yet unmatched pairs. 55873 records in RAM.
INFO 2026-06-08 09:03:15 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr17:40,093,166
INFO 2026-06-08 09:03:15 MarkDuplicates Tracking 236263 as yet unmatched pairs. 54609 records in RAM.
INFO 2026-06-08 09:03:17 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr17:41,523,963
INFO 2026-06-08 09:03:17 MarkDuplicates Tracking 234918 as yet unmatched pairs. 53264 records in RAM.
INFO 2026-06-08 09:03:18 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr17:41,802,850
INFO 2026-06-08 09:03:18 MarkDuplicates Tracking 231896 as yet unmatched pairs. 50242 records in RAM.
INFO 2026-06-08 09:03:20 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr17:42,795,706
INFO 2026-06-08 09:03:20 MarkDuplicates Tracking 230305 as yet unmatched pairs. 48651 records in RAM.
INFO 2026-06-08 09:03:22 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr17:44,349,542
INFO 2026-06-08 09:03:22 MarkDuplicates Tracking 229596 as yet unmatched pairs. 47942 records in RAM.
INFO 2026-06-08 09:03:24 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 2s. Last read position: chr17:45,478,127
INFO 2026-06-08 09:03:24 MarkDuplicates Tracking 227169 as yet unmatched pairs. 45509 records in RAM.
INFO 2026-06-08 09:03:26 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr17:48,032,156
INFO 2026-06-08 09:03:26 MarkDuplicates Tracking 225609 as yet unmatched pairs. 43949 records in RAM.
INFO 2026-06-08 09:03:27 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,507
INFO 2026-06-08 09:03:27 MarkDuplicates Tracking 231008 as yet unmatched pairs. 49348 records in RAM.
INFO 2026-06-08 09:05:36 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 128s. Last read position: chr17:50,187,041
INFO 2026-06-08 09:05:36 MarkDuplicates Tracking 236048 as yet unmatched pairs. 54388 records in RAM.
INFO 2026-06-08 09:05:38 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,541
INFO 2026-06-08 09:05:38 MarkDuplicates Tracking 234685 as yet unmatched pairs. 53025 records in RAM.
INFO 2026-06-08 09:05:39 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:17:07s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,378
INFO 2026-06-08 09:05:39 MarkDuplicates Tracking 232762 as yet unmatched pairs. 51102 records in RAM.
INFO 2026-06-08 09:05:41 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,040
INFO 2026-06-08 09:05:41 MarkDuplicates Tracking 237385 as yet unmatched pairs. 55725 records in RAM.
INFO 2026-06-08 09:05:43 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 2s. Last read position: chr17:50,191,476
INFO 2026-06-08 09:05:43 MarkDuplicates Tracking 229154 as yet unmatched pairs. 47494 records in RAM.
INFO 2026-06-08 09:05:45 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,845
INFO 2026-06-08 09:05:45 MarkDuplicates Tracking 231857 as yet unmatched pairs. 50197 records in RAM.
INFO 2026-06-08 09:05:47 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,402
INFO 2026-06-08 09:05:47 MarkDuplicates Tracking 229514 as yet unmatched pairs. 47854 records in RAM.
INFO 2026-06-08 09:05:48 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,442
INFO 2026-06-08 09:05:48 MarkDuplicates Tracking 222962 as yet unmatched pairs. 41301 records in RAM.
INFO 2026-06-08 09:05:50 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,189
INFO 2026-06-08 09:05:50 MarkDuplicates Tracking 237764 as yet unmatched pairs. 56103 records in RAM.
INFO 2026-06-08 09:05:52 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 2s. Last read position: chr17:50,197,208
INFO 2026-06-08 09:05:52 MarkDuplicates Tracking 235767 as yet unmatched pairs. 54105 records in RAM.
INFO 2026-06-08 09:05:54 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:21s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,311
INFO 2026-06-08 09:05:54 MarkDuplicates Tracking 215068 as yet unmatched pairs. 33406 records in RAM.
INFO 2026-06-08 09:05:55 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,737,000
INFO 2026-06-08 09:05:55 MarkDuplicates Tracking 203696 as yet unmatched pairs. 22034 records in RAM.
INFO 2026-06-08 09:05:57 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr17:59,644,309
INFO 2026-06-08 09:05:57 MarkDuplicates Tracking 203128 as yet unmatched pairs. 21465 records in RAM.
INFO 2026-06-08 09:05:58 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 1s. Last read position: chr17:62,600,764
INFO 2026-06-08 09:05:58 MarkDuplicates Tracking 200472 as yet unmatched pairs. 18808 records in RAM.
INFO 2026-06-08 09:06:00 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr17:64,895,254
INFO 2026-06-08 09:06:00 MarkDuplicates Tracking 198787 as yet unmatched pairs. 17118 records in RAM.
INFO 2026-06-08 09:06:01 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr17:73,286,217
INFO 2026-06-08 09:06:01 MarkDuplicates Tracking 197076 as yet unmatched pairs. 15406 records in RAM.
INFO 2026-06-08 09:06:03 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: chr17:75,573,173
INFO 2026-06-08 09:06:03 MarkDuplicates Tracking 195841 as yet unmatched pairs. 14171 records in RAM.
INFO 2026-06-08 09:06:05 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 1s. Last read position: chr17:75,750,754
INFO 2026-06-08 09:06:05 MarkDuplicates Tracking 194227 as yet unmatched pairs. 12557 records in RAM.
INFO 2026-06-08 09:06:06 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 1s. Last read position: chr17:75,899,589
INFO 2026-06-08 09:06:06 MarkDuplicates Tracking 191697 as yet unmatched pairs. 10027 records in RAM.
INFO 2026-06-08 09:06:08 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr17:77,402,558
INFO 2026-06-08 09:06:08 MarkDuplicates Tracking 190535 as yet unmatched pairs. 8865 records in RAM.
INFO 2026-06-08 09:06:10 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 2s. Last read position: chr17:79,079,561
INFO 2026-06-08 09:06:10 MarkDuplicates Tracking 188348 as yet unmatched pairs. 6678 records in RAM.
INFO 2026-06-08 09:06:12 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr17:80,376,465
INFO 2026-06-08 09:06:12 MarkDuplicates Tracking 187098 as yet unmatched pairs. 5428 records in RAM.
INFO 2026-06-08 09:06:13 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 1s. Last read position: chr17:81,694,982
INFO 2026-06-08 09:06:13 MarkDuplicates Tracking 185192 as yet unmatched pairs. 3522 records in RAM.
INFO 2026-06-08 09:06:14 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 1s. Last read position: chr17:82,082,073
INFO 2026-06-08 09:06:14 MarkDuplicates Tracking 183303 as yet unmatched pairs. 1633 records in RAM.
INFO 2026-06-08 09:06:16 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr18:2,697,104
INFO 2026-06-08 09:06:16 MarkDuplicates Tracking 181627 as yet unmatched pairs. 9286 records in RAM.
INFO 2026-06-08 09:06:18 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 1s. Last read position: chr18:12,724,555
INFO 2026-06-08 09:06:18 MarkDuplicates Tracking 180681 as yet unmatched pairs. 8340 records in RAM.
INFO 2026-06-08 09:06:19 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr18:23,899,331
INFO 2026-06-08 09:06:19 MarkDuplicates Tracking 179384 as yet unmatched pairs. 7042 records in RAM.
INFO 2026-06-08 09:06:22 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 2s. Last read position: chr18:31,541,223
INFO 2026-06-08 09:06:22 MarkDuplicates Tracking 177370 as yet unmatched pairs. 5027 records in RAM.
INFO 2026-06-08 09:06:23 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chr18:45,948,503
INFO 2026-06-08 09:06:23 MarkDuplicates Tracking 176137 as yet unmatched pairs. 3794 records in RAM.
INFO 2026-06-08 09:06:24 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 1s. Last read position: chr18:51,176,446
INFO 2026-06-08 09:06:24 MarkDuplicates Tracking 174468 as yet unmatched pairs. 2124 records in RAM.
INFO 2026-06-08 09:06:26 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr18:79,680,004
INFO 2026-06-08 09:06:26 MarkDuplicates Tracking 172599 as yet unmatched pairs. 250 records in RAM.
INFO 2026-06-08 09:06:28 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 2s. Last read position: chr19:758,400
INFO 2026-06-08 09:06:28 MarkDuplicates Tracking 171363 as yet unmatched pairs. 75089 records in RAM.
INFO 2026-06-08 09:06:30 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr19:1,105,780
INFO 2026-06-08 09:06:30 MarkDuplicates Tracking 169797 as yet unmatched pairs. 73523 records in RAM.
INFO 2026-06-08 09:06:33 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 2s. Last read position: chr19:1,440,196
INFO 2026-06-08 09:06:33 MarkDuplicates Tracking 167735 as yet unmatched pairs. 71461 records in RAM.
INFO 2026-06-08 09:06:34 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr19:2,110,731
INFO 2026-06-08 09:06:34 MarkDuplicates Tracking 165251 as yet unmatched pairs. 68977 records in RAM.
INFO 2026-06-08 09:06:36 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 1s. Last read position: chr19:3,186,042
INFO 2026-06-08 09:06:36 MarkDuplicates Tracking 163016 as yet unmatched pairs. 66742 records in RAM.
INFO 2026-06-08 09:06:38 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr19:4,324,129
INFO 2026-06-08 09:06:38 MarkDuplicates Tracking 160988 as yet unmatched pairs. 64713 records in RAM.
INFO 2026-06-08 09:06:39 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr19:5,690,502
INFO 2026-06-08 09:06:39 MarkDuplicates Tracking 159185 as yet unmatched pairs. 62908 records in RAM.
INFO 2026-06-08 09:06:41 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr19:6,746,496
INFO 2026-06-08 09:06:41 MarkDuplicates Tracking 157402 as yet unmatched pairs. 61125 records in RAM.
INFO 2026-06-08 09:06:42 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr19:8,072,096
INFO 2026-06-08 09:06:42 MarkDuplicates Tracking 155101 as yet unmatched pairs. 58824 records in RAM.
INFO 2026-06-08 09:06:44 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 2s. Last read position: chr19:8,959,607
INFO 2026-06-08 09:06:44 MarkDuplicates Tracking 153995 as yet unmatched pairs. 57718 records in RAM.
INFO 2026-06-08 09:06:46 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 2s. Last read position: chr19:10,467,314
INFO 2026-06-08 09:06:46 MarkDuplicates Tracking 152329 as yet unmatched pairs. 56052 records in RAM.
INFO 2026-06-08 09:06:48 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr19:11,105,224
INFO 2026-06-08 09:06:48 MarkDuplicates Tracking 151042 as yet unmatched pairs. 54765 records in RAM.
INFO 2026-06-08 09:06:50 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr19:12,652,377
INFO 2026-06-08 09:06:50 MarkDuplicates Tracking 149260 as yet unmatched pairs. 52983 records in RAM.
INFO 2026-06-08 09:06:51 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr19:13,153,474
INFO 2026-06-08 09:06:51 MarkDuplicates Tracking 147642 as yet unmatched pairs. 51365 records in RAM.
INFO 2026-06-08 09:06:53 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr19:14,516,745
INFO 2026-06-08 09:06:53 MarkDuplicates Tracking 147228 as yet unmatched pairs. 50951 records in RAM.
INFO 2026-06-08 09:06:54 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr19:15,308,149
INFO 2026-06-08 09:06:54 MarkDuplicates Tracking 143622 as yet unmatched pairs. 47345 records in RAM.
INFO 2026-06-08 09:06:56 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr19:17,194,777
INFO 2026-06-08 09:06:56 MarkDuplicates Tracking 142010 as yet unmatched pairs. 45733 records in RAM.
INFO 2026-06-08 09:06:58 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr19:17,863,006
INFO 2026-06-08 09:06:58 MarkDuplicates Tracking 141151 as yet unmatched pairs. 44874 records in RAM.
INFO 2026-06-08 09:06:59 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr19:18,856,222
INFO 2026-06-08 09:06:59 MarkDuplicates Tracking 138084 as yet unmatched pairs. 41807 records in RAM.
INFO 2026-06-08 09:07:01 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr19:29,823,661
INFO 2026-06-08 09:07:01 MarkDuplicates Tracking 136533 as yet unmatched pairs. 40255 records in RAM.
INFO 2026-06-08 09:07:02 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr19:35,000,344
INFO 2026-06-08 09:07:02 MarkDuplicates Tracking 134945 as yet unmatched pairs. 38667 records in RAM.
INFO 2026-06-08 09:07:04 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr19:35,267,633
INFO 2026-06-08 09:07:04 MarkDuplicates Tracking 135840 as yet unmatched pairs. 39562 records in RAM.
INFO 2026-06-08 09:07:05 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr19:35,777,840
INFO 2026-06-08 09:07:05 MarkDuplicates Tracking 131059 as yet unmatched pairs. 34781 records in RAM.
INFO 2026-06-08 09:07:08 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 2s. Last read position: chr19:38,289,154
INFO 2026-06-08 09:07:08 MarkDuplicates Tracking 130919 as yet unmatched pairs. 34641 records in RAM.
INFO 2026-06-08 09:07:09 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr19:38,802,125
INFO 2026-06-08 09:07:09 MarkDuplicates Tracking 129368 as yet unmatched pairs. 33090 records in RAM.
INFO 2026-06-08 09:07:11 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr19:39,433,283
INFO 2026-06-08 09:07:11 MarkDuplicates Tracking 129810 as yet unmatched pairs. 33531 records in RAM.
INFO 2026-06-08 09:07:12 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr19:40,605,485
INFO 2026-06-08 09:07:12 MarkDuplicates Tracking 125075 as yet unmatched pairs. 28796 records in RAM.
INFO 2026-06-08 09:07:14 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr19:41,432,214
INFO 2026-06-08 09:07:14 MarkDuplicates Tracking 123571 as yet unmatched pairs. 27291 records in RAM.
INFO 2026-06-08 09:07:15 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr19:41,719,948
INFO 2026-06-08 09:07:15 MarkDuplicates Tracking 130679 as yet unmatched pairs. 34399 records in RAM.
INFO 2026-06-08 09:07:17 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr19:41,907,270
INFO 2026-06-08 09:07:17 MarkDuplicates Tracking 121368 as yet unmatched pairs. 25088 records in RAM.
INFO 2026-06-08 09:07:19 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr19:42,362,561
INFO 2026-06-08 09:07:19 MarkDuplicates Tracking 119267 as yet unmatched pairs. 22987 records in RAM.
INFO 2026-06-08 09:07:20 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr19:44,985,292
INFO 2026-06-08 09:07:20 MarkDuplicates Tracking 117678 as yet unmatched pairs. 21394 records in RAM.
INFO 2026-06-08 09:07:23 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 2s. Last read position: chr19:45,792,487
INFO 2026-06-08 09:07:23 MarkDuplicates Tracking 115961 as yet unmatched pairs. 19677 records in RAM.
INFO 2026-06-08 09:07:25 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 2s. Last read position: chr19:47,320,504
INFO 2026-06-08 09:07:25 MarkDuplicates Tracking 114049 as yet unmatched pairs. 17765 records in RAM.
INFO 2026-06-08 09:07:26 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr19:48,615,406
INFO 2026-06-08 09:07:26 MarkDuplicates Tracking 113848 as yet unmatched pairs. 17564 records in RAM.
INFO 2026-06-08 09:07:28 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr19:49,210,312
INFO 2026-06-08 09:07:28 MarkDuplicates Tracking 110907 as yet unmatched pairs. 14623 records in RAM.
INFO 2026-06-08 09:07:29 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr19:49,651,234
INFO 2026-06-08 09:07:29 MarkDuplicates Tracking 109021 as yet unmatched pairs. 12737 records in RAM.
INFO 2026-06-08 09:07:31 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr19:50,225,617
INFO 2026-06-08 09:07:31 MarkDuplicates Tracking 107735 as yet unmatched pairs. 11451 records in RAM.
INFO 2026-06-08 09:07:32 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr19:50,963,400
INFO 2026-06-08 09:07:32 MarkDuplicates Tracking 106440 as yet unmatched pairs. 10156 records in RAM.
INFO 2026-06-08 09:07:34 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr19:52,613,550
INFO 2026-06-08 09:07:34 MarkDuplicates Tracking 103329 as yet unmatched pairs. 7045 records in RAM.
INFO 2026-06-08 09:07:36 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr19:54,456,053
INFO 2026-06-08 09:07:36 MarkDuplicates Tracking 102062 as yet unmatched pairs. 5778 records in RAM.
INFO 2026-06-08 09:07:37 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr19:55,386,591
INFO 2026-06-08 09:07:37 MarkDuplicates Tracking 103071 as yet unmatched pairs. 6787 records in RAM.
INFO 2026-06-08 09:07:39 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr19:57,291,375
INFO 2026-06-08 09:07:39 MarkDuplicates Tracking 97906 as yet unmatched pairs. 1622 records in RAM.
INFO 2026-06-08 09:07:40 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr20:388,063
INFO 2026-06-08 09:07:40 MarkDuplicates Tracking 96333 as yet unmatched pairs. 28696 records in RAM.
INFO 2026-06-08 09:07:42 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr20:3,796,599
INFO 2026-06-08 09:07:42 MarkDuplicates Tracking 95060 as yet unmatched pairs. 27423 records in RAM.
INFO 2026-06-08 09:07:43 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr20:17,658,902
INFO 2026-06-08 09:07:43 MarkDuplicates Tracking 92766 as yet unmatched pairs. 25128 records in RAM.
INFO 2026-06-08 09:07:45 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr20:25,271,432
INFO 2026-06-08 09:07:45 MarkDuplicates Tracking 92675 as yet unmatched pairs. 25037 records in RAM.
INFO 2026-06-08 09:07:46 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr20:32,433,700
INFO 2026-06-08 09:07:46 MarkDuplicates Tracking 89842 as yet unmatched pairs. 22204 records in RAM.
INFO 2026-06-08 09:07:48 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 2s. Last read position: chr20:34,927,149
INFO 2026-06-08 09:07:48 MarkDuplicates Tracking 88469 as yet unmatched pairs. 20831 records in RAM.
INFO 2026-06-08 09:07:50 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr20:36,175,615
INFO 2026-06-08 09:07:50 MarkDuplicates Tracking 87146 as yet unmatched pairs. 19508 records in RAM.
INFO 2026-06-08 09:07:51 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr20:38,131,097
INFO 2026-06-08 09:07:51 MarkDuplicates Tracking 85743 as yet unmatched pairs. 18105 records in RAM.
INFO 2026-06-08 09:07:53 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 2s. Last read position: chr20:44,429,520
INFO 2026-06-08 09:07:53 MarkDuplicates Tracking 83638 as yet unmatched pairs. 16000 records in RAM.
INFO 2026-06-08 09:07:55 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr20:45,893,243
INFO 2026-06-08 09:07:55 MarkDuplicates Tracking 82600 as yet unmatched pairs. 14962 records in RAM.
INFO 2026-06-08 09:07:56 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr20:49,114,769
INFO 2026-06-08 09:07:56 MarkDuplicates Tracking 80547 as yet unmatched pairs. 12909 records in RAM.
INFO 2026-06-08 09:07:58 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr20:51,601,221
INFO 2026-06-08 09:07:58 MarkDuplicates Tracking 79202 as yet unmatched pairs. 11563 records in RAM.
INFO 2026-06-08 09:08:00 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr20:58,895,617
INFO 2026-06-08 09:08:00 MarkDuplicates Tracking 79927 as yet unmatched pairs. 12288 records in RAM.
INFO 2026-06-08 09:08:01 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr20:62,309,367
INFO 2026-06-08 09:08:01 MarkDuplicates Tracking 77215 as yet unmatched pairs. 9576 records in RAM.
INFO 2026-06-08 09:08:03 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr20:62,338,110
INFO 2026-06-08 09:08:03 MarkDuplicates Tracking 74769 as yet unmatched pairs. 7130 records in RAM.
INFO 2026-06-08 09:08:04 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr20:63,203,426
INFO 2026-06-08 09:08:04 MarkDuplicates Tracking 71407 as yet unmatched pairs. 3768 records in RAM.
INFO 2026-06-08 09:08:06 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr20:63,567,310
INFO 2026-06-08 09:08:06 MarkDuplicates Tracking 70034 as yet unmatched pairs. 2395 records in RAM.
INFO 2026-06-08 09:08:07 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr21:5,034,099
INFO 2026-06-08 09:08:07 MarkDuplicates Tracking 67686 as yet unmatched pairs. 12063 records in RAM.
INFO 2026-06-08 09:08:09 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,949
INFO 2026-06-08 09:08:09 MarkDuplicates Tracking 66390 as yet unmatched pairs. 10765 records in RAM.
INFO 2026-06-08 09:08:10 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,394
INFO 2026-06-08 09:08:10 MarkDuplicates Tracking 65132 as yet unmatched pairs. 9506 records in RAM.
INFO 2026-06-08 09:08:11 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr21:31,659,710
INFO 2026-06-08 09:08:11 MarkDuplicates Tracking 63913 as yet unmatched pairs. 8287 records in RAM.
INFO 2026-06-08 09:08:13 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr21:36,230,711
INFO 2026-06-08 09:08:13 MarkDuplicates Tracking 62307 as yet unmatched pairs. 6681 records in RAM.
INFO 2026-06-08 09:08:14 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr21:41,741,097
INFO 2026-06-08 09:08:14 MarkDuplicates Tracking 60618 as yet unmatched pairs. 4992 records in RAM.
INFO 2026-06-08 09:08:16 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr21:44,330,273
INFO 2026-06-08 09:08:16 MarkDuplicates Tracking 59134 as yet unmatched pairs. 3508 records in RAM.
INFO 2026-06-08 09:08:17 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr21:46,003,492
INFO 2026-06-08 09:08:17 MarkDuplicates Tracking 57918 as yet unmatched pairs. 2287 records in RAM.
INFO 2026-06-08 09:08:19 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr22:17,109,585
INFO 2026-06-08 09:08:19 MarkDuplicates Tracking 55633 as yet unmatched pairs. 24293 records in RAM.
INFO 2026-06-08 09:08:20 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr22:20,465,328
INFO 2026-06-08 09:08:20 MarkDuplicates Tracking 53766 as yet unmatched pairs. 22426 records in RAM.
INFO 2026-06-08 09:08:22 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr22:23,180,963
INFO 2026-06-08 09:08:22 MarkDuplicates Tracking 53459 as yet unmatched pairs. 22119 records in RAM.
INFO 2026-06-08 09:08:23 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr22:23,971,545
INFO 2026-06-08 09:08:23 MarkDuplicates Tracking 50322 as yet unmatched pairs. 18982 records in RAM.
INFO 2026-06-08 09:08:25 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr22:28,800,373
INFO 2026-06-08 09:08:25 MarkDuplicates Tracking 48672 as yet unmatched pairs. 17332 records in RAM.
INFO 2026-06-08 09:08:27 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 2s. Last read position: chr22:30,636,481
INFO 2026-06-08 09:08:27 MarkDuplicates Tracking 46829 as yet unmatched pairs. 15489 records in RAM.
INFO 2026-06-08 09:08:28 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr22:36,155,903
INFO 2026-06-08 09:08:28 MarkDuplicates Tracking 45333 as yet unmatched pairs. 13993 records in RAM.
INFO 2026-06-08 09:08:30 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr22:36,467,869
INFO 2026-06-08 09:08:30 MarkDuplicates Tracking 43619 as yet unmatched pairs. 12279 records in RAM.
INFO 2026-06-08 09:08:32 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr22:37,844,146
INFO 2026-06-08 09:08:32 MarkDuplicates Tracking 41978 as yet unmatched pairs. 10638 records in RAM.
INFO 2026-06-08 09:08:33 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr22:39,317,528
INFO 2026-06-08 09:08:33 MarkDuplicates Tracking 41022 as yet unmatched pairs. 9682 records in RAM.
INFO 2026-06-08 09:08:35 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr22:41,515,800
INFO 2026-06-08 09:08:35 MarkDuplicates Tracking 39063 as yet unmatched pairs. 7723 records in RAM.
INFO 2026-06-08 09:08:36 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr22:43,169,544
INFO 2026-06-08 09:08:36 MarkDuplicates Tracking 37313 as yet unmatched pairs. 5973 records in RAM.
INFO 2026-06-08 09:08:38 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr22:49,961,506
INFO 2026-06-08 09:08:38 MarkDuplicates Tracking 35316 as yet unmatched pairs. 3976 records in RAM.
INFO 2026-06-08 09:08:39 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr22:50,461,243
INFO 2026-06-08 09:08:39 MarkDuplicates Tracking 34587 as yet unmatched pairs. 3247 records in RAM.
INFO 2026-06-08 09:08:41 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chrX:1,391,955
INFO 2026-06-08 09:08:41 MarkDuplicates Tracking 31013 as yet unmatched pairs. 26638 records in RAM.
INFO 2026-06-08 09:08:42 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chrX:12,976,817
INFO 2026-06-08 09:08:42 MarkDuplicates Tracking 31797 as yet unmatched pairs. 27422 records in RAM.
INFO 2026-06-08 09:08:44 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chrX:24,055,020
INFO 2026-06-08 09:08:44 MarkDuplicates Tracking 29143 as yet unmatched pairs. 24768 records in RAM.
INFO 2026-06-08 09:08:45 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chrX:41,201,104
INFO 2026-06-08 09:08:45 MarkDuplicates Tracking 27077 as yet unmatched pairs. 22702 records in RAM.
INFO 2026-06-08 09:08:47 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chrX:47,223,667
INFO 2026-06-08 09:08:47 MarkDuplicates Tracking 25410 as yet unmatched pairs. 21035 records in RAM.
INFO 2026-06-08 09:08:48 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chrX:48,604,975
INFO 2026-06-08 09:08:48 MarkDuplicates Tracking 23421 as yet unmatched pairs. 19046 records in RAM.
INFO 2026-06-08 09:08:50 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chrX:52,907,201
INFO 2026-06-08 09:08:50 MarkDuplicates Tracking 21883 as yet unmatched pairs. 17508 records in RAM.
INFO 2026-06-08 09:08:51 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chrX:53,624,637
INFO 2026-06-08 09:08:51 MarkDuplicates Tracking 21027 as yet unmatched pairs. 16652 records in RAM.
INFO 2026-06-08 09:08:53 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chrX:70,492,226
INFO 2026-06-08 09:08:53 MarkDuplicates Tracking 19093 as yet unmatched pairs. 14718 records in RAM.
INFO 2026-06-08 09:08:54 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chrX:73,848,936
INFO 2026-06-08 09:08:54 MarkDuplicates Tracking 17433 as yet unmatched pairs. 13058 records in RAM.
INFO 2026-06-08 09:08:56 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chrX:101,391,044
INFO 2026-06-08 09:08:56 MarkDuplicates Tracking 17415 as yet unmatched pairs. 13040 records in RAM.
INFO 2026-06-08 09:08:57 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chrX:119,236,350
INFO 2026-06-08 09:08:57 MarkDuplicates Tracking 14897 as yet unmatched pairs. 10522 records in RAM.
INFO 2026-06-08 09:08:59 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chrX:130,147,842
INFO 2026-06-08 09:08:59 MarkDuplicates Tracking 13319 as yet unmatched pairs. 8944 records in RAM.
INFO 2026-06-08 09:09:00 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chrX:153,506,610
INFO 2026-06-08 09:09:00 MarkDuplicates Tracking 11848 as yet unmatched pairs. 7473 records in RAM.
INFO 2026-06-08 09:09:01 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chrX:154,011,768
INFO 2026-06-08 09:09:01 MarkDuplicates Tracking 10162 as yet unmatched pairs. 5787 records in RAM.
INFO 2026-06-08 09:09:03 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chrX:154,354,391
INFO 2026-06-08 09:09:03 MarkDuplicates Tracking 10452 as yet unmatched pairs. 6077 records in RAM.
INFO 2026-06-08 09:09:06 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 2s. Last read position: chrX:154,364,885
INFO 2026-06-08 09:09:06 MarkDuplicates Tracking 8091 as yet unmatched pairs. 3716 records in RAM.
INFO 2026-06-08 09:09:07 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chrX:154,467,933
INFO 2026-06-08 09:09:07 MarkDuplicates Tracking 5224 as yet unmatched pairs. 849 records in RAM.
INFO 2026-06-08 09:09:09 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: GL000220.1:115,491
INFO 2026-06-08 09:09:09 MarkDuplicates Tracking 4204 as yet unmatched pairs. 930 records in RAM.
INFO 2026-06-08 09:09:10 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: KI270733.1:130,366
INFO 2026-06-08 09:09:10 MarkDuplicates Tracking 3210 as yet unmatched pairs. 3185 records in RAM.
INFO 2026-06-08 09:09:11 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,694
INFO 2026-06-08 09:09:11 MarkDuplicates Tracking 33 as yet unmatched pairs. 8 records in RAM.
INFO 2026-06-08 09:09:11 MarkDuplicates Read 633196679 records. 0 pairs never matched.
INFO 2026-06-08 09:09:58 MarkDuplicates After buildSortedReadEndLists freeMemory: 204138376; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:09:58 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:10:04 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:10:04 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:10:19 OpticalDuplicateFinder Large duplicate set. size = 1032
INFO 2026-06-08 09:10:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,034
INFO 2026-06-08 09:10:33 OpticalDuplicateFinder Large duplicate set. size = 1336
INFO 2026-06-08 09:10:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,274
INFO 2026-06-08 09:10:38 OpticalDuplicateFinder Large duplicate set. size = 1391
INFO 2026-06-08 09:10:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,472
INFO 2026-06-08 09:11:51 OpticalDuplicateFinder Large duplicate set. size = 1186
INFO 2026-06-08 09:11:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,234
INFO 2026-06-08 09:11:51 OpticalDuplicateFinder Large duplicate set. size = 1023
INFO 2026-06-08 09:11:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,612
INFO 2026-06-08 09:11:52 OpticalDuplicateFinder Large duplicate set. size = 1014
INFO 2026-06-08 09:11:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,562
INFO 2026-06-08 09:12:16 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:12:16 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:13:28 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:13:42 MarkDuplicates After generateDuplicateIndexes freeMemory: 203980552; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:13:42 MarkDuplicates Marking 496293665 records as duplicates.
INFO 2026-06-08 09:13:42 MarkDuplicates Found 12968122 optical duplicate clusters.
INFO 2026-06-08 09:13:42 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:13:59 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:24,120,862
INFO 2026-06-08 09:14:17 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:34s. Time for last 10,000,000: 17s. Last read position: chr1:52,415,357
INFO 2026-06-08 09:14:34 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:52s. Time for last 10,000,000: 17s. Last read position: chr1:150,077,688
INFO 2026-06-08 09:14:52 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:09s. Time for last 10,000,000: 17s. Last read position: chr1:167,991,241
INFO 2026-06-08 09:15:09 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:27s. Time for last 10,000,000: 17s. Last read position: chr1:223,749,070
INFO 2026-06-08 09:15:26 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:44s. Time for last 10,000,000: 17s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:15:43 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:01s. Time for last 10,000,000: 17s. Last read position: chr2:85,394,788
INFO 2026-06-08 09:16:00 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:18s. Time for last 10,000,000: 16s. Last read position: chr2:170,715,483
INFO 2026-06-08 09:16:17 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:35s. Time for last 10,000,000: 16s. Last read position: chr2:215,386,767
INFO 2026-06-08 09:16:34 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:51s. Time for last 10,000,000: 16s. Last read position: chr2:237,368,921
INFO 2026-06-08 09:16:51 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:09s. Time for last 10,000,000: 17s. Last read position: chr3:47,877,424
INFO 2026-06-08 09:17:08 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:26s. Time for last 10,000,000: 17s. Last read position: chr3:100,713,649
INFO 2026-06-08 09:17:25 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:43s. Time for last 10,000,000: 16s. Last read position: chr3:186,584,574
INFO 2026-06-08 09:17:42 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:00s. Time for last 10,000,000: 17s. Last read position: chr4:39,547,825
INFO 2026-06-08 09:17:59 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:17s. Time for last 10,000,000: 17s. Last read position: chr5:5,461,402
INFO 2026-06-08 09:18:16 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:34s. Time for last 10,000,000: 17s. Last read position: chr5:135,352,978
INFO 2026-06-08 09:18:33 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:51s. Time for last 10,000,000: 17s. Last read position: chr5:179,833,598
INFO 2026-06-08 09:18:51 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:08s. Time for last 10,000,000: 17s. Last read position: chr6:31,356,228
INFO 2026-06-08 09:19:08 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:26s. Time for last 10,000,000: 17s. Last read position: chr6:47,232,825
INFO 2026-06-08 09:19:25 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:43s. Time for last 10,000,000: 17s. Last read position: chr6:151,353,321
INFO 2026-06-08 09:19:42 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:00s. Time for last 10,000,000: 17s. Last read position: chr7:5,712,787
INFO 2026-06-08 09:20:00 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:18s. Time for last 10,000,000: 18s. Last read position: chr7:76,063,564
INFO 2026-06-08 09:20:17 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:35s. Time for last 10,000,000: 17s. Last read position: chr7:102,554,310
INFO 2026-06-08 09:20:35 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:52s. Time for last 10,000,000: 17s. Last read position: chr7:151,064,873
INFO 2026-06-08 09:20:52 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:10s. Time for last 10,000,000: 17s. Last read position: chr8:70,586,974
INFO 2026-06-08 09:21:09 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:27s. Time for last 10,000,000: 17s. Last read position: chr8:143,864,118
INFO 2026-06-08 09:21:26 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:44s. Time for last 10,000,000: 16s. Last read position: chr9:34,402,457
INFO 2026-06-08 09:21:43 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:01s. Time for last 10,000,000: 17s. Last read position: chr9:127,872,744
INFO 2026-06-08 09:22:00 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:18s. Time for last 10,000,000: 16s. Last read position: chr10:28,583,367
INFO 2026-06-08 09:22:17 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:35s. Time for last 10,000,000: 16s. Last read position: chr10:92,008,137
INFO 2026-06-08 09:22:34 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:52s. Time for last 10,000,000: 16s. Last read position: chr11:319,856
INFO 2026-06-08 09:22:50 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:08s. Time for last 10,000,000: 16s. Last read position: chr11:18,616,885
INFO 2026-06-08 09:23:08 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:25s. Time for last 10,000,000: 17s. Last read position: chr11:63,976,259
INFO 2026-06-08 09:23:25 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:42s. Time for last 10,000,000: 16s. Last read position: chr11:73,234,156
INFO 2026-06-08 09:23:42 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:00s. Time for last 10,000,000: 17s. Last read position: chr12:2,858,851
INFO 2026-06-08 09:23:59 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:17s. Time for last 10,000,000: 17s. Last read position: chr12:50,192,506
INFO 2026-06-08 09:24:18 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:36s. Time for last 10,000,000: 18s. Last read position: chr12:57,532,753
INFO 2026-06-08 09:24:35 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:53s. Time for last 10,000,000: 17s. Last read position: chr12:120,212,384
INFO 2026-06-08 09:24:52 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:10s. Time for last 10,000,000: 17s. Last read position: chr13:45,337,192
INFO 2026-06-08 09:25:09 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:27s. Time for last 10,000,000: 17s. Last read position: chr14:24,292,204
INFO 2026-06-08 09:25:27 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:45s. Time for last 10,000,000: 17s. Last read position: chr14:100,346,834
INFO 2026-06-08 09:25:44 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:01s. Time for last 10,000,000: 16s. Last read position: chr15:22,916,600
INFO 2026-06-08 09:26:01 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:19s. Time for last 10,000,000: 17s. Last read position: chr15:63,600,745
INFO 2026-06-08 09:26:18 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:35s. Time for last 10,000,000: 16s. Last read position: chr15:101,974,234
INFO 2026-06-08 09:26:35 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:52s. Time for last 10,000,000: 16s. Last read position: chr16:15,617,418
INFO 2026-06-08 09:26:52 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:10s. Time for last 10,000,000: 17s. Last read position: chr16:29,810,288
INFO 2026-06-08 09:27:09 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:27s. Time for last 10,000,000: 16s. Last read position: chr16:69,424,750
INFO 2026-06-08 09:27:26 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:44s. Time for last 10,000,000: 17s. Last read position: chr17:4,539,923
INFO 2026-06-08 09:27:43 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:01s. Time for last 10,000,000: 16s. Last read position: chr17:38,185,077
INFO 2026-06-08 09:28:00 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:18s. Time for last 10,000,000: 17s. Last read position: chr17:50,187,041
INFO 2026-06-08 09:28:17 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:35s. Time for last 10,000,000: 16s. Last read position: chr17:50,199,311
INFO 2026-06-08 09:28:34 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:52s. Time for last 10,000,000: 16s. Last read position: chr17:79,079,561
INFO 2026-06-08 09:28:51 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:09s. Time for last 10,000,000: 17s. Last read position: chr18:79,680,004
INFO 2026-06-08 09:29:08 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:26s. Time for last 10,000,000: 16s. Last read position: chr19:8,959,607
INFO 2026-06-08 09:29:25 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:42s. Time for last 10,000,000: 16s. Last read position: chr19:29,823,661
INFO 2026-06-08 09:29:41 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:59s. Time for last 10,000,000: 16s. Last read position: chr19:41,907,270
INFO 2026-06-08 09:29:58 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:16s. Time for last 10,000,000: 16s. Last read position: chr19:52,613,550
INFO 2026-06-08 09:30:15 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:33s. Time for last 10,000,000: 17s. Last read position: chr20:36,175,615
INFO 2026-06-08 09:30:32 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:50s. Time for last 10,000,000: 16s. Last read position: chr20:63,567,310
INFO 2026-06-08 09:30:49 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:07s. Time for last 10,000,000: 16s. Last read position: chr22:20,465,328
INFO 2026-06-08 09:31:06 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:24s. Time for last 10,000,000: 16s. Last read position: chr22:43,169,544
INFO 2026-06-08 09:31:23 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:41s. Time for last 10,000,000: 16s. Last read position: chrX:53,624,637
INFO 2026-06-08 09:31:40 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:17:58s. Time for last 10,000,000: 16s. Last read position: chrX:154,467,933
INFO 2026-06-08 09:31:54 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:31:54 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:31:54 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:31:54 MarkDuplicates Before output close freeMemory: 203343416; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:31:54 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:31:54 MarkDuplicates After output close freeMemory: 104191312; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:31:54 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 43.40 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory