File Info

Filename
659_bGW-T1-TRNA-1_B23WHTKLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/31e4ce64f6d1ae3ad80c5e6631c367/659_bGW-T1-TRNA-1_B23WHTKLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:39:23
                             Started mapping on |	Jun 08 07:41:45
                                    Finished on |	Jun 08 08:36:31
       Mapping speed, Million of reads per hour |	323.81

                          Number of input reads |	295567884
                      Average input read length |	256
                                    UNIQUE READS:
                   Uniquely mapped reads number |	282674833
                        Uniquely mapped reads % |	95.64%
                          Average mapped length |	255.58
                       Number of splices: Total |	349088933
            Number of splices: Annotated (sjdb) |	345080717
                       Number of splices: GT/AG |	345703236
                       Number of splices: GC/AG |	2253816
                       Number of splices: AT/AC |	310649
               Number of splices: Non-canonical |	821232
                      Mismatch rate per base, % |	0.21%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.08
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.70
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7971422
             % of reads mapped to multiple loci |	2.70%
        Number of reads mapped to too many loci |	145993
             % of reads mapped to too many loci |	0.05%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	555439
       % of reads unmapped: too many mismatches |	0.19%
            Number of reads unmapped: too short |	2062271
                 % of reads unmapped: too short |	0.70%
                Number of reads unmapped: other |	154267
                     % of reads unmapped: other |	0.05%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3501658
                            % of chimeric reads |	1.18%