Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/95ec88a9ce11301a20d4ffcb5030a5/659_ciZ-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/46582de811f1beb65008daf3b6b251/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/46582de811f1beb65008daf3b6b251/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 293198624
unpaired = 4614765
MERGED PAIRED END READS = 293198624
MATES PROCESSED = 591012013
TOTAL READS     = 297813389
DISTINCT READS  = 4.24321e+07
DISTINCT COUNTS = 737
MAX COUNT       = 662772
COUNTS OF 1     = 7.78812e+06
MAX TERMS       = 100
OBSERVED COUNTS (662773)
1	7788121
2	4201208
3	3687713
4	3436485
5	3185552
6	2897345
7	2585934
8	2270034
9	1961466
10	1673772
11	1414091
12	1184024
13	984282
14	814340
15	673774
16	556022
17	458448
18	379001
19	315278
20	262240
21	219803
22	184688
23	155998
24	131879
25	112995
26	98114
27	83544
28	72767
29	63624
30	55542
31	48975
32	42962
33	37860
34	33973
35	29667
36	26853
37	23892
38	21376
39	19256
40	17352
41	15514
42	14171
43	12712
44	11431
45	10568
46	9499
47	8951
48	7905
49	7340
50	6679
51	6213
52	5733
53	5238
54	4963
55	4548
56	4149
57	4107
58	3740
59	3464
60	3397
61	3146
62	2931
63	2765
64	2575
65	2423
66	2290
67	2127
68	2070
69	1899
70	1812
71	1739
72	1651
73	1569
74	1477
75	1360
76	1403
77	1279
78	1165
79	1177
80	1092
81	1028
82	1030
83	995
84	967
85	873
86	861
87	840
88	771
89	769
90	713
91	716
92	663
93	606
94	609
95	575
96	567
97	567
98	528
99	526
100	484
101	423
102	453
103	461
104	429
105	386
106	406
107	403
108	339
109	350
110	366
111	331
112	327
113	299
114	308
115	310
116	276
117	253
118	280
119	248
120	254
121	270
122	244
123	267
124	236
125	224
126	241
127	202
128	197
129	214
130	188
131	183
132	187
133	163
134	178
135	159
136	151
137	157
138	164
139	153
140	158
141	140
142	137
143	139
144	111
145	132
146	117
147	105
148	131
149	130
150	106
151	95
152	115
153	130
154	88
155	96
156	112
157	103
158	91
159	112
160	77
161	81
162	110
163	90
164	84
165	82
166	83
167	74
168	81
169	76
170	65
171	85
172	78
173	57
174	80
175	75
176	63
177	45
178	57
179	58
180	71
181	54
182	53
183	49
184	50
185	58
186	49
187	62
188	68
189	42
190	33
191	58
192	48
193	42
194	41
195	47
196	47
197	35
198	34
199	45
200	32
201	44
202	42
203	48
204	47
205	36
206	39
207	33
208	30
209	44
210	34
211	39
212	35
213	37
214	34
215	32
216	35
217	24
218	30
219	20
220	34
221	34
222	25
223	28
224	23
225	35
226	27
227	28
228	29
229	29
230	22
231	29
232	25
233	26
234	19
235	23
236	14
237	18
238	24
239	24
240	16
241	15
242	20
243	26
244	16
245	15
246	17
247	10
248	12
249	22
250	21
251	22
252	13
253	25
254	18
255	16
256	29
257	18
258	28
259	23
260	17
261	13
262	24
263	15
264	20
265	19
266	19
267	20
268	15
269	10
270	17
271	7
272	14
273	14
274	13
275	14
276	15
277	14
278	8
279	13
280	16
281	14
282	7
283	8
284	8
285	11
286	17
287	15
288	5
289	17
290	13
291	13
292	13
293	14
294	13
295	8
296	11
297	13
298	12
299	13
300	18
301	8
302	12
303	9
304	14
305	12
306	10
307	9
308	13
309	8
310	6
311	12
312	9
313	13
314	13
315	8
316	9
317	7
318	9
319	11
320	13
321	7
322	4
323	3
324	3
325	8
326	3
327	11
328	6
329	10
330	14
331	11
332	15
333	8
334	6
335	4
336	5
337	7
338	10
339	5
340	3
341	6
342	3
343	2
344	7
345	7
346	2
347	9
348	5
349	5
350	5
351	7
352	7
353	5
354	6
355	6
356	5
357	9
358	6
359	7
360	7
361	4
362	5
363	4
364	4
365	4
366	5
367	3
368	4
369	5
370	4
371	3
372	3
373	10
374	3
375	6
376	5
377	2
378	5
379	6
380	2
381	5
382	2
383	4
384	4
385	3
386	9
387	6
388	4
389	2
390	8
391	1
392	3
393	3
394	3
395	2
396	2
397	5
398	1
399	3
401	3
402	3
403	8
404	2
405	2
406	4
407	5
408	6
409	4
410	1
411	4
412	4
413	4
414	3
415	4
416	5
417	1
418	2
419	2
420	4
421	4
422	4
424	4
425	3
427	3
428	2
429	3
430	4
431	6
433	5
434	4
435	3
436	2
437	5
438	4
439	4
440	1
441	3
442	4
444	4
445	7
446	3
447	4
448	3
449	1
450	3
451	2
452	2
454	1
455	1
456	2
458	1
459	3
460	3
461	2
462	1
463	2
464	1
465	4
466	6
467	4
468	3
469	1
470	3
471	2
472	2
474	2
475	1
476	2
478	2
479	2
481	2
482	1
483	3
486	2
487	1
488	2
489	2
490	2
494	4
495	4
496	2
497	3
498	1
500	2
502	1
503	2
504	2
505	2
506	1
507	1
508	2
509	1
510	2
511	2
512	2
513	4
514	2
515	2
516	2
517	1
518	2
519	4
520	1
522	3
524	2
525	2
527	1
530	3
531	4
532	2
533	4
535	1
536	2
537	2
538	3
541	1
542	1
544	4
545	1
546	2
547	1
548	1
550	3
551	1
552	1
553	1
555	1
556	3
557	1
558	1
561	1
564	1
565	3
566	3
569	3
570	2
573	1
575	1
576	4
577	1
578	1
580	3
581	2
582	3
583	2
587	2
589	4
593	2
595	1
596	1
598	1
599	3
602	1
605	1
606	1
607	1
610	2
612	1
613	1
614	4
615	2
618	1
620	1
622	2
624	2
625	1
626	1
627	1
631	1
635	1
638	1
641	2
643	1
644	1
645	1
646	1
647	3
648	1
651	2
654	1
656	3
657	2
658	1
659	1
661	2
664	3
667	1
669	2
671	1
672	1
675	1
678	1
680	1
681	1
682	1
685	1
686	1
692	1
693	1
695	1
696	2
698	1
701	1
703	1
705	1
709	1
711	1
712	1
714	2
717	1
718	1
722	1
726	1
731	1
732	1
735	1
737	1
738	1
739	1
741	1
751	1
753	1
755	1
757	1
758	4
760	1
766	1
768	1
771	2
776	1
777	1
778	1
783	1
786	1
787	2
791	2
792	2
794	1
797	1
798	2
805	1
807	2
808	1
809	1
810	1
811	1
815	3
819	1
823	1
825	1
829	1
833	2
844	1
845	1
851	1
855	2
865	1
870	1
877	1
884	1
887	1
891	1
895	1
898	1
899	1
904	1
906	1
908	1
915	1
919	1
925	1
947	1
952	1
965	1
972	1
982	1
990	1
995	1
1000	1
1016	1
1039	1
1045	1
1049	1
1057	1
1059	1
1075	1
1086	1
1087	1
1095	1
1111	1
1116	1
1117	1
1120	1
1128	2
1134	1
1138	1
1145	2
1156	1
1159	1
1164	1
1166	1
1167	1
1176	1
1193	1
1202	1
1204	1
1273	1
1277	1
1283	1
1296	1
1306	1
1340	1
1355	1
1385	1
1426	1
1506	1
1556	1
1560	1
1639	1
1640	1
1676	1
1680	1
1710	1
1936	1
1973	1
2003	1
2074	1
2166	1
2197	1
2262	1
2585	1
3178	1
8645	1
9850	1
12845	1
38828	1
662772	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
................................................._.........._...........
........__....._.................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]