Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/80660f98e0eb402bd0bfaf242a5a73/659_buD-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/8d601fead9802e110c7cfc056458ec/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/8d601fead9802e110c7cfc056458ec/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
Processed 1000000 records
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Processed 40000000 records
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paired = 216078284
unpaired = 3554272
MERGED PAIRED END READS = 216078284
MATES PROCESSED = 435710840
TOTAL READS = 219632556
DISTINCT READS = 7.05187e+07
DISTINCT COUNTS = 837
MAX COUNT = 635040
COUNTS OF 1 = 2.36873e+07
MAX TERMS = 100
OBSERVED COUNTS (635041)
1 23687287
2 15724764
3 10771099
4 7095747
5 4539029
6 2869553
7 1815831
8 1164972
9 763335
10 509309
11 352407
12 249761
13 180854
14 134205
15 102457
16 79257
17 63057
18 50178
19 41310
20 34478
21 28908
22 24779
23 20622
24 18088
25 15891
26 13875
27 12185
28 10802
29 9738
30 8743
31 7981
32 6841
33 6607
34 5923
35 5372
36 4951
37 4498
38 4157
39 3982
40 3590
41 3313
42 3039
43 2925
44 2720
45 2455
46 2362
47 2155
48 2087
49 1954
50 1822
51 1714
52 1632
53 1607
54 1540
55 1327
56 1257
57 1259
58 1165
59 1128
60 1108
61 1065
62 1014
63 921
64 871
65 869
66 794
67 762
68 752
69 661
70 718
71 703
72 635
73 608
74 589
75 583
76 551
77 536
78 483
79 511
80 427
81 463
82 453
83 435
84 406
85 386
86 388
87 381
88 412
89 333
90 324
91 349
92 294
93 332
94 313
95 304
96 296
97 275
98 266
99 247
100 258
101 265
102 265
103 192
104 198
105 222
106 221
107 197
108 172
109 190
110 177
111 183
112 146
113 172
114 184
115 175
116 168
117 180
118 161
119 141
120 160
121 129
122 134
123 140
124 148
125 126
126 108
127 123
128 122
129 108
130 116
131 118
132 109
133 108
134 98
135 105
136 102
137 87
138 98
139 93
140 99
141 94
142 90
143 77
144 88
145 68
146 78
147 76
148 84
149 65
150 70
151 78
152 66
153 69
154 67
155 72
156 75
157 67
158 76
159 46
160 53
161 60
162 53
163 65
164 69
165 65
166 56
167 49
168 50
169 55
170 60
171 40
172 47
173 46
174 47
175 50
176 54
177 37
178 48
179 39
180 36
181 46
182 40
183 48
184 51
185 33
186 39
187 46
188 40
189 42
190 46
191 31
192 50
193 31
194 33
195 29
196 37
197 42
198 37
199 37
200 37
201 42
202 41
203 33
204 33
205 29
206 27
207 42
208 26
209 25
210 33
211 23
212 28
213 31
214 27
215 26
216 24
217 26
218 24
219 33
220 27
221 23
222 33
223 11
224 18
225 24
226 23
227 27
228 25
229 18
230 30
231 27
232 22
233 21
234 27
235 10
236 23
237 20
238 12
239 21
240 16
241 25
242 27
243 17
244 17
245 19
246 16
247 16
248 21
249 17
250 23
251 18
252 16
253 14
254 15
255 18
256 19
257 17
258 22
259 10
260 16
261 19
262 15
263 17
264 16
265 16
266 22
267 15
268 16
269 14
270 10
271 12
272 15
273 21
274 20
275 16
276 12
277 15
278 14
279 7
280 11
281 8
282 17
283 18
284 7
285 19
286 8
287 11
288 8
289 7
290 12
291 8
292 10
293 9
294 7
295 15
296 10
297 7
298 13
299 5
300 14
301 11
302 10
303 13
304 6
305 9
306 10
307 9
308 4
309 11
310 7
311 8
312 7
313 11
314 9
315 11
316 8
317 3
318 5
319 11
320 12
321 7
322 8
323 9
324 11
325 7
326 3
327 5
328 14
329 8
330 9
331 7
332 3
333 4
334 8
335 9
336 15
337 10
338 4
339 11
340 7
341 2
342 10
343 10
344 8
345 7
346 7
347 10
348 8
349 8
350 13
351 10
352 7
353 4
354 6
355 15
356 9
357 5
358 9
359 3
360 4
361 8
362 6
363 8
364 5
365 9
366 5
367 7
368 3
369 5
370 7
371 5
372 8
373 5
374 3
375 3
376 4
377 3
378 5
379 3
380 4
381 5
382 3
383 7
384 7
385 6
386 3
387 3
388 2
389 4
390 3
391 7
392 4
393 5
394 2
395 2
396 6
397 3
398 1
399 5
400 4
401 3
402 6
403 4
404 2
405 4
406 4
407 4
408 2
409 3
410 5
411 6
412 6
413 3
414 5
415 2
416 4
417 4
418 1
419 2
420 3
421 6
422 2
423 2
424 1
425 6
426 4
427 1
428 5
429 4
430 3
431 3
432 3
433 3
434 4
435 6
436 3
437 6
438 3
439 3
440 4
441 4
442 2
443 1
444 3
445 1
446 1
447 3
448 1
449 1
450 4
451 1
452 6
453 3
454 4
455 1
456 8
457 1
458 4
459 5
460 5
461 1
462 2
463 5
464 3
465 2
466 7
467 2
468 2
469 3
470 3
471 2
472 2
474 3
475 1
476 4
477 2
478 1
479 8
480 5
481 3
482 1
483 2
484 4
485 3
486 2
487 2
488 3
489 4
490 3
491 2
492 2
494 2
496 2
498 1
499 2
500 2
501 3
503 3
504 3
505 3
506 3
507 4
508 2
509 1
511 4
512 3
513 2
514 2
515 2
516 2
517 1
518 5
519 1
520 1
521 1
522 1
523 2
524 4
525 2
527 3
528 1
529 5
531 1
532 1
533 1
534 1
535 3
536 2
537 2
541 3
542 2
543 1
544 1
545 1
546 6
547 1
548 1
549 3
550 4
552 1
553 5
554 3
555 2
556 2
557 3
558 2
559 1
560 1
561 1
562 3
563 3
565 1
566 2
567 1
568 2
569 4
571 3
572 1
574 1
575 3
576 6
577 1
579 1
580 1
581 4
582 2
584 2
585 1
586 3
587 6
589 1
591 1
592 1
594 3
596 2
597 3
598 2
599 1
600 2
601 1
602 3
605 1
606 1
607 2
609 1
610 2
611 1
614 1
616 3
617 3
621 4
622 1
623 1
624 1
625 1
626 1
627 3
628 1
629 1
630 1
631 1
637 1
638 1
639 2
641 2
642 3
646 2
647 1
648 2
652 1
653 1
654 2
655 3
656 1
657 1
658 2
659 3
660 4
661 1
662 1
664 2
666 2
673 2
674 1
675 1
676 1
677 2
678 2
679 2
682 1
683 1
685 1
687 1
688 2
691 1
692 1
694 1
695 1
696 3
699 1
702 2
703 1
704 1
706 1
708 1
710 3
711 1
712 1
714 1
715 2
716 1
718 1
719 1
721 1
722 1
725 1
726 2
728 2
729 1
730 1
732 2
733 2
737 2
740 4
743 3
745 1
748 2
751 1
753 2
755 3
762 1
763 1
764 1
765 1
768 1
769 3
770 2
771 1
773 1
775 1
778 2
779 2
781 2
783 1
784 1
787 1
790 2
791 2
795 1
796 1
797 1
800 1
801 1
802 2
803 1
807 1
809 3
813 2
817 1
822 1
824 1
829 1
837 1
838 1
842 1
843 1
844 3
845 1
852 1
858 1
859 1
862 1
873 1
878 1
883 1
884 1
885 1
890 2
895 1
901 1
906 1
907 1
908 1
909 1
913 1
923 1
927 1
932 1
933 1
934 1
935 1
939 1
948 2
950 1
954 1
955 1
956 1
958 1
962 1
971 1
978 1
982 2
984 1
987 1
989 1
990 1
992 1
997 1
999 1
1000 1
1004 1
1005 1
1009 1
1011 1
1013 1
1019 1
1022 1
1024 1
1037 1
1043 1
1046 1
1052 1
1067 1
1068 1
1073 2
1076 2
1087 1
1092 1
1110 1
1115 1
1117 1
1126 1
1128 1
1134 1
1145 1
1146 1
1173 1
1181 1
1190 1
1208 1
1228 1
1233 1
1243 1
1246 2
1250 1
1255 1
1305 1
1317 1
1319 1
1329 1
1336 1
1367 1
1369 1
1370 1
1377 1
1383 1
1387 1
1424 1
1445 1
1523 1
1526 1
1535 1
1559 1
1624 1
1640 1
1647 1
1729 1
1744 1
1805 1
1837 1
1838 1
1860 1
1902 1
1918 1
1938 1
1985 1
2018 1
2027 1
2030 1
2042 1
2045 1
2171 1
2249 1
2427 1
2509 1
2587 1
2735 1
2960 1
3025 1
3358 1
4123 1
4827 1
7418 1
8782 1
11505 1
43968 1
635040 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
...._......................._............._......_............_.._......
..................................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]