Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/80660f98e0eb402bd0bfaf242a5a73/659_buD-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/8d601fead9802e110c7cfc056458ec/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/8d601fead9802e110c7cfc056458ec/.command.run ==> STAGING COMPLETE (3 inputs) PAIRED_END_BAM_INPUT Processed 1000000 records Processed 2000000 records Processed 3000000 records Processed 4000000 records Processed 5000000 records Processed 6000000 records Processed 7000000 records Processed 8000000 records Processed 9000000 records Processed 10000000 records Processed 11000000 records Processed 12000000 records Processed 13000000 records Processed 14000000 records Processed 15000000 records Processed 16000000 records Processed 17000000 records Processed 18000000 records Processed 19000000 records Processed 20000000 records Processed 21000000 records Processed 22000000 records Processed 23000000 records Processed 24000000 records Processed 25000000 records Processed 26000000 records Processed 27000000 records Processed 28000000 records Processed 29000000 records Processed 30000000 records Processed 31000000 records Processed 32000000 records Processed 33000000 records Processed 34000000 records Processed 35000000 records Processed 36000000 records Processed 37000000 records Processed 38000000 records Processed 39000000 records Processed 40000000 records Processed 41000000 records Processed 42000000 records Processed 43000000 records Processed 44000000 records Processed 45000000 records Processed 46000000 records Processed 47000000 records Processed 48000000 records Processed 49000000 records Processed 50000000 records Processed 51000000 records Processed 52000000 records Processed 53000000 records Processed 54000000 records Processed 55000000 records Processed 56000000 records Processed 57000000 records Processed 58000000 records Processed 59000000 records Processed 60000000 records Processed 61000000 records Processed 62000000 records Processed 63000000 records Processed 64000000 records Processed 65000000 records Processed 66000000 records Processed 67000000 records Processed 68000000 records Processed 69000000 records Processed 70000000 records Processed 71000000 records Processed 72000000 records Processed 73000000 records Processed 74000000 records Processed 75000000 records Processed 76000000 records Processed 77000000 records Processed 78000000 records Processed 79000000 records Processed 80000000 records Processed 81000000 records Processed 82000000 records Processed 83000000 records Processed 84000000 records Processed 85000000 records Processed 86000000 records Processed 87000000 records Processed 88000000 records Processed 89000000 records Processed 90000000 records Processed 91000000 records Processed 92000000 records Processed 93000000 records Processed 94000000 records Processed 95000000 records Processed 96000000 records Processed 97000000 records Processed 98000000 records Processed 99000000 records Processed 100000000 records Processed 101000000 records Processed 102000000 records Processed 103000000 records Processed 104000000 records Processed 105000000 records Processed 106000000 records Processed 107000000 records Processed 108000000 records Processed 109000000 records Processed 110000000 records Processed 111000000 records Processed 112000000 records Processed 113000000 records Processed 114000000 records Processed 115000000 records Processed 116000000 records Processed 117000000 records Processed 118000000 records Processed 119000000 records Processed 120000000 records Processed 121000000 records Processed 122000000 records Processed 123000000 records Processed 124000000 records Processed 125000000 records Processed 126000000 records Processed 127000000 records Processed 128000000 records Processed 129000000 records Processed 130000000 records Processed 131000000 records Processed 132000000 records Processed 133000000 records Processed 134000000 records Processed 135000000 records Processed 136000000 records Processed 137000000 records Processed 138000000 records Processed 139000000 records Processed 140000000 records Processed 141000000 records Processed 142000000 records Processed 143000000 records Processed 144000000 records Processed 145000000 records Processed 146000000 records Processed 147000000 records Processed 148000000 records Processed 149000000 records Processed 150000000 records Processed 151000000 records Processed 152000000 records Processed 153000000 records Processed 154000000 records Processed 155000000 records Processed 156000000 records Processed 157000000 records Processed 158000000 records Processed 159000000 records Processed 160000000 records Processed 161000000 records Processed 162000000 records Processed 163000000 records Processed 164000000 records Processed 165000000 records Processed 166000000 records Processed 167000000 records Processed 168000000 records Processed 169000000 records Processed 170000000 records Processed 171000000 records Processed 172000000 records Processed 173000000 records Processed 174000000 records Processed 175000000 records Processed 176000000 records Processed 177000000 records Processed 178000000 records Processed 179000000 records Processed 180000000 records Processed 181000000 records Processed 182000000 records Processed 183000000 records Processed 184000000 records Processed 185000000 records Processed 186000000 records Processed 187000000 records Processed 188000000 records Processed 189000000 records Processed 190000000 records Processed 191000000 records Processed 192000000 records Processed 193000000 records Processed 194000000 records Processed 195000000 records Processed 196000000 records Processed 197000000 records Processed 198000000 records Processed 199000000 records Processed 200000000 records Processed 201000000 records Processed 202000000 records Processed 203000000 records Processed 204000000 records Processed 205000000 records Processed 206000000 records Processed 207000000 records Processed 208000000 records Processed 209000000 records Processed 210000000 records Processed 211000000 records Processed 212000000 records Processed 213000000 records Processed 214000000 records Processed 215000000 records Processed 216000000 records Processed 217000000 records Processed 218000000 records Processed 219000000 records Processed 220000000 records Processed 221000000 records Processed 222000000 records Processed 223000000 records Processed 224000000 records Processed 225000000 records Processed 226000000 records Processed 227000000 records Processed 228000000 records Processed 229000000 records Processed 230000000 records Processed 231000000 records Processed 232000000 records Processed 233000000 records Processed 234000000 records Processed 235000000 records Processed 236000000 records Processed 237000000 records Processed 238000000 records Processed 239000000 records Processed 240000000 records Processed 241000000 records Processed 242000000 records Processed 243000000 records Processed 244000000 records Processed 245000000 records Processed 246000000 records Processed 247000000 records Processed 248000000 records Processed 249000000 records Processed 250000000 records Processed 251000000 records Processed 252000000 records Processed 253000000 records Processed 254000000 records Processed 255000000 records Processed 256000000 records Processed 257000000 records Processed 258000000 records Processed 259000000 records Processed 260000000 records Processed 261000000 records Processed 262000000 records Processed 263000000 records Processed 264000000 records Processed 265000000 records Processed 266000000 records Processed 267000000 records Processed 268000000 records Processed 269000000 records Processed 270000000 records Processed 271000000 records Processed 272000000 records Processed 273000000 records Processed 274000000 records Processed 275000000 records Processed 276000000 records Processed 277000000 records Processed 278000000 records Processed 279000000 records Processed 280000000 records Processed 281000000 records Processed 282000000 records Processed 283000000 records Processed 284000000 records Processed 285000000 records Processed 286000000 records Processed 287000000 records Processed 288000000 records Processed 289000000 records Processed 290000000 records Processed 291000000 records Processed 292000000 records Processed 293000000 records Processed 294000000 records Processed 295000000 records Processed 296000000 records Processed 297000000 records Processed 298000000 records Processed 299000000 records Processed 300000000 records Processed 301000000 records Processed 302000000 records Processed 303000000 records Processed 304000000 records Processed 305000000 records Processed 306000000 records Processed 307000000 records Processed 308000000 records Processed 309000000 records Processed 310000000 records Processed 311000000 records Processed 312000000 records Processed 313000000 records Processed 314000000 records Processed 315000000 records Processed 316000000 records Processed 317000000 records Processed 318000000 records Processed 319000000 records Processed 320000000 records Processed 321000000 records Processed 322000000 records Processed 323000000 records Processed 324000000 records Processed 325000000 records Processed 326000000 records Processed 327000000 records Processed 328000000 records Processed 329000000 records Processed 330000000 records Processed 331000000 records Processed 332000000 records Processed 333000000 records Processed 334000000 records Processed 335000000 records Processed 336000000 records Processed 337000000 records Processed 338000000 records Processed 339000000 records Processed 340000000 records Processed 341000000 records Processed 342000000 records Processed 343000000 records Processed 344000000 records Processed 345000000 records Processed 346000000 records Processed 347000000 records Processed 348000000 records Processed 349000000 records Processed 350000000 records Processed 351000000 records Processed 352000000 records Processed 353000000 records Processed 354000000 records Processed 355000000 records Processed 356000000 records Processed 357000000 records Processed 358000000 records Processed 359000000 records Processed 360000000 records Processed 361000000 records Processed 362000000 records Processed 363000000 records Processed 364000000 records Processed 365000000 records Processed 366000000 records Processed 367000000 records Processed 368000000 records Processed 369000000 records Processed 370000000 records Processed 371000000 records Processed 372000000 records Processed 373000000 records Processed 374000000 records Processed 375000000 records Processed 376000000 records Processed 377000000 records Processed 378000000 records Processed 379000000 records Processed 380000000 records Processed 381000000 records Processed 382000000 records Processed 383000000 records Processed 384000000 records Processed 385000000 records Processed 386000000 records Processed 387000000 records Processed 388000000 records Processed 389000000 records Processed 390000000 records Processed 391000000 records Processed 392000000 records Processed 393000000 records Processed 394000000 records Processed 395000000 records Processed 396000000 records Processed 397000000 records Processed 398000000 records Processed 399000000 records Processed 400000000 records Processed 401000000 records Processed 402000000 records Processed 403000000 records Processed 404000000 records Processed 405000000 records Processed 406000000 records Processed 407000000 records Processed 408000000 records Processed 409000000 records Processed 410000000 records Processed 411000000 records Processed 412000000 records Processed 413000000 records Processed 414000000 records Processed 415000000 records Processed 416000000 records Processed 417000000 records Processed 418000000 records Processed 419000000 records Processed 420000000 records Processed 421000000 records Processed 422000000 records Processed 423000000 records Processed 424000000 records Processed 425000000 records Processed 426000000 records Processed 427000000 records Processed 428000000 records Processed 429000000 records Processed 430000000 records Processed 431000000 records Processed 432000000 records Processed 433000000 records Processed 434000000 records Processed 435000000 records paired = 216078284 unpaired = 3554272 MERGED PAIRED END READS = 216078284 MATES PROCESSED = 435710840 TOTAL READS = 219632556 DISTINCT READS = 7.05187e+07 DISTINCT COUNTS = 837 MAX COUNT = 635040 COUNTS OF 1 = 2.36873e+07 MAX TERMS = 100 OBSERVED COUNTS (635041) 1 23687287 2 15724764 3 10771099 4 7095747 5 4539029 6 2869553 7 1815831 8 1164972 9 763335 10 509309 11 352407 12 249761 13 180854 14 134205 15 102457 16 79257 17 63057 18 50178 19 41310 20 34478 21 28908 22 24779 23 20622 24 18088 25 15891 26 13875 27 12185 28 10802 29 9738 30 8743 31 7981 32 6841 33 6607 34 5923 35 5372 36 4951 37 4498 38 4157 39 3982 40 3590 41 3313 42 3039 43 2925 44 2720 45 2455 46 2362 47 2155 48 2087 49 1954 50 1822 51 1714 52 1632 53 1607 54 1540 55 1327 56 1257 57 1259 58 1165 59 1128 60 1108 61 1065 62 1014 63 921 64 871 65 869 66 794 67 762 68 752 69 661 70 718 71 703 72 635 73 608 74 589 75 583 76 551 77 536 78 483 79 511 80 427 81 463 82 453 83 435 84 406 85 386 86 388 87 381 88 412 89 333 90 324 91 349 92 294 93 332 94 313 95 304 96 296 97 275 98 266 99 247 100 258 101 265 102 265 103 192 104 198 105 222 106 221 107 197 108 172 109 190 110 177 111 183 112 146 113 172 114 184 115 175 116 168 117 180 118 161 119 141 120 160 121 129 122 134 123 140 124 148 125 126 126 108 127 123 128 122 129 108 130 116 131 118 132 109 133 108 134 98 135 105 136 102 137 87 138 98 139 93 140 99 141 94 142 90 143 77 144 88 145 68 146 78 147 76 148 84 149 65 150 70 151 78 152 66 153 69 154 67 155 72 156 75 157 67 158 76 159 46 160 53 161 60 162 53 163 65 164 69 165 65 166 56 167 49 168 50 169 55 170 60 171 40 172 47 173 46 174 47 175 50 176 54 177 37 178 48 179 39 180 36 181 46 182 40 183 48 184 51 185 33 186 39 187 46 188 40 189 42 190 46 191 31 192 50 193 31 194 33 195 29 196 37 197 42 198 37 199 37 200 37 201 42 202 41 203 33 204 33 205 29 206 27 207 42 208 26 209 25 210 33 211 23 212 28 213 31 214 27 215 26 216 24 217 26 218 24 219 33 220 27 221 23 222 33 223 11 224 18 225 24 226 23 227 27 228 25 229 18 230 30 231 27 232 22 233 21 234 27 235 10 236 23 237 20 238 12 239 21 240 16 241 25 242 27 243 17 244 17 245 19 246 16 247 16 248 21 249 17 250 23 251 18 252 16 253 14 254 15 255 18 256 19 257 17 258 22 259 10 260 16 261 19 262 15 263 17 264 16 265 16 266 22 267 15 268 16 269 14 270 10 271 12 272 15 273 21 274 20 275 16 276 12 277 15 278 14 279 7 280 11 281 8 282 17 283 18 284 7 285 19 286 8 287 11 288 8 289 7 290 12 291 8 292 10 293 9 294 7 295 15 296 10 297 7 298 13 299 5 300 14 301 11 302 10 303 13 304 6 305 9 306 10 307 9 308 4 309 11 310 7 311 8 312 7 313 11 314 9 315 11 316 8 317 3 318 5 319 11 320 12 321 7 322 8 323 9 324 11 325 7 326 3 327 5 328 14 329 8 330 9 331 7 332 3 333 4 334 8 335 9 336 15 337 10 338 4 339 11 340 7 341 2 342 10 343 10 344 8 345 7 346 7 347 10 348 8 349 8 350 13 351 10 352 7 353 4 354 6 355 15 356 9 357 5 358 9 359 3 360 4 361 8 362 6 363 8 364 5 365 9 366 5 367 7 368 3 369 5 370 7 371 5 372 8 373 5 374 3 375 3 376 4 377 3 378 5 379 3 380 4 381 5 382 3 383 7 384 7 385 6 386 3 387 3 388 2 389 4 390 3 391 7 392 4 393 5 394 2 395 2 396 6 397 3 398 1 399 5 400 4 401 3 402 6 403 4 404 2 405 4 406 4 407 4 408 2 409 3 410 5 411 6 412 6 413 3 414 5 415 2 416 4 417 4 418 1 419 2 420 3 421 6 422 2 423 2 424 1 425 6 426 4 427 1 428 5 429 4 430 3 431 3 432 3 433 3 434 4 435 6 436 3 437 6 438 3 439 3 440 4 441 4 442 2 443 1 444 3 445 1 446 1 447 3 448 1 449 1 450 4 451 1 452 6 453 3 454 4 455 1 456 8 457 1 458 4 459 5 460 5 461 1 462 2 463 5 464 3 465 2 466 7 467 2 468 2 469 3 470 3 471 2 472 2 474 3 475 1 476 4 477 2 478 1 479 8 480 5 481 3 482 1 483 2 484 4 485 3 486 2 487 2 488 3 489 4 490 3 491 2 492 2 494 2 496 2 498 1 499 2 500 2 501 3 503 3 504 3 505 3 506 3 507 4 508 2 509 1 511 4 512 3 513 2 514 2 515 2 516 2 517 1 518 5 519 1 520 1 521 1 522 1 523 2 524 4 525 2 527 3 528 1 529 5 531 1 532 1 533 1 534 1 535 3 536 2 537 2 541 3 542 2 543 1 544 1 545 1 546 6 547 1 548 1 549 3 550 4 552 1 553 5 554 3 555 2 556 2 557 3 558 2 559 1 560 1 561 1 562 3 563 3 565 1 566 2 567 1 568 2 569 4 571 3 572 1 574 1 575 3 576 6 577 1 579 1 580 1 581 4 582 2 584 2 585 1 586 3 587 6 589 1 591 1 592 1 594 3 596 2 597 3 598 2 599 1 600 2 601 1 602 3 605 1 606 1 607 2 609 1 610 2 611 1 614 1 616 3 617 3 621 4 622 1 623 1 624 1 625 1 626 1 627 3 628 1 629 1 630 1 631 1 637 1 638 1 639 2 641 2 642 3 646 2 647 1 648 2 652 1 653 1 654 2 655 3 656 1 657 1 658 2 659 3 660 4 661 1 662 1 664 2 666 2 673 2 674 1 675 1 676 1 677 2 678 2 679 2 682 1 683 1 685 1 687 1 688 2 691 1 692 1 694 1 695 1 696 3 699 1 702 2 703 1 704 1 706 1 708 1 710 3 711 1 712 1 714 1 715 2 716 1 718 1 719 1 721 1 722 1 725 1 726 2 728 2 729 1 730 1 732 2 733 2 737 2 740 4 743 3 745 1 748 2 751 1 753 2 755 3 762 1 763 1 764 1 765 1 768 1 769 3 770 2 771 1 773 1 775 1 778 2 779 2 781 2 783 1 784 1 787 1 790 2 791 2 795 1 796 1 797 1 800 1 801 1 802 2 803 1 807 1 809 3 813 2 817 1 822 1 824 1 829 1 837 1 838 1 842 1 843 1 844 3 845 1 852 1 858 1 859 1 862 1 873 1 878 1 883 1 884 1 885 1 890 2 895 1 901 1 906 1 907 1 908 1 909 1 913 1 923 1 927 1 932 1 933 1 934 1 935 1 939 1 948 2 950 1 954 1 955 1 956 1 958 1 962 1 971 1 978 1 982 2 984 1 987 1 989 1 990 1 992 1 997 1 999 1 1000 1 1004 1 1005 1 1009 1 1011 1 1013 1 1019 1 1022 1 1024 1 1037 1 1043 1 1046 1 1052 1 1067 1 1068 1 1073 2 1076 2 1087 1 1092 1 1110 1 1115 1 1117 1 1126 1 1128 1 1134 1 1145 1 1146 1 1173 1 1181 1 1190 1 1208 1 1228 1 1233 1 1243 1 1246 2 1250 1 1255 1 1305 1 1317 1 1319 1 1329 1 1336 1 1367 1 1369 1 1370 1 1377 1 1383 1 1387 1 1424 1 1445 1 1523 1 1526 1 1535 1 1559 1 1624 1 1640 1 1647 1 1729 1 1744 1 1805 1 1837 1 1838 1 1860 1 1902 1 1918 1 1938 1 1985 1 2018 1 2027 1 2030 1 2042 1 2045 1 2171 1 2249 1 2427 1 2509 1 2587 1 2735 1 2960 1 3025 1 3358 1 4123 1 4827 1 7418 1 8782 1 11505 1 43968 1 635040 1 [ESTIMATING YIELD CURVE] [BOOTSTRAPPING HISTOGRAM] ...._......................._............._......_............_.._...... .................................. [COMPUTING CONFIDENCE INTERVALS] [WRITING OUTPUT]