Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/b62f15a4561d0fc1ce19a04264433c/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/b62f15a4561d0fc1ce19a04264433c/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/446451d3d89ff3671a2d60ed9f0977/659_cTi-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_cTi-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_cTi-T1-TRNA-1_B23WHTKLT4_1.md.bam --METRICS_FILE 659_cTi-T1-TRNA-1_B23WHTKLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:46:19.527 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:46:19 GMT 2026] MarkDuplicates --INPUT 659_cTi-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_cTi-T1-TRNA-1_B23WHTKLT4_1.md.bam --METRICS_FILE 659_cTi-T1-TRNA-1_B23WHTKLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:46:19 GMT 2026] Executing as ?@nf-39b62f15a4561d0fc1ce19a04264433c-d7fa4-svx4j on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:46:19 MarkDuplicates Start of doWork freeMemory: 105828416; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:46:19 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:46:19 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:46:24 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,313,740
INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 2301 as yet unmatched pairs. 179 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 1s. Last read position: chr1:2,303,951
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 5046 as yet unmatched pairs. 635 records in RAM.
INFO 2026-06-08 08:46:27 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 1s. Last read position: chr1:7,820,226
INFO 2026-06-08 08:46:27 MarkDuplicates Tracking 6726 as yet unmatched pairs. 29 records in RAM.
INFO 2026-06-08 08:46:30 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:10,638,685
INFO 2026-06-08 08:46:30 MarkDuplicates Tracking 8403 as yet unmatched pairs. 0 records in RAM.
INFO 2026-06-08 08:46:32 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:13,773,137
INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 10268 as yet unmatched pairs. 156 records in RAM.
INFO 2026-06-08 08:46:33 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:16,993,817
INFO 2026-06-08 08:46:33 MarkDuplicates Tracking 11983 as yet unmatched pairs. 223 records in RAM.
INFO 2026-06-08 08:46:35 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:20,644,542
INFO 2026-06-08 08:46:35 MarkDuplicates Tracking 13786 as yet unmatched pairs. 277 records in RAM.
INFO 2026-06-08 08:46:37 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:21,839,477
INFO 2026-06-08 08:46:37 MarkDuplicates Tracking 16665 as yet unmatched pairs. 1522 records in RAM.
INFO 2026-06-08 08:46:40 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:22,091,472
INFO 2026-06-08 08:46:40 MarkDuplicates Tracking 18570 as yet unmatched pairs. 1633 records in RAM.
INFO 2026-06-08 08:46:41 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:22,660,930
INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 20953 as yet unmatched pairs. 2356 records in RAM.
INFO 2026-06-08 08:46:43 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:25,340,565
INFO 2026-06-08 08:46:43 MarkDuplicates Tracking 20650 as yet unmatched pairs. 384 records in RAM.
INFO 2026-06-08 08:46:45 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 2s. Last read position: chr1:27,107,813
INFO 2026-06-08 08:46:45 MarkDuplicates Tracking 22212 as yet unmatched pairs. 137 records in RAM.
INFO 2026-06-08 08:46:48 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 2s. Last read position: chr1:29,236,658
INFO 2026-06-08 08:46:48 MarkDuplicates Tracking 24407 as yet unmatched pairs. 501 records in RAM.
INFO 2026-06-08 08:46:49 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:31,919,512
INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 26470 as yet unmatched pairs. 733 records in RAM.
INFO 2026-06-08 08:46:51 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:35,190,794
INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 28393 as yet unmatched pairs. 936 records in RAM.
INFO 2026-06-08 08:46:53 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 2s. Last read position: chr1:37,807,979
INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 29238 as yet unmatched pairs. 66 records in RAM.
INFO 2026-06-08 08:46:55 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 2s. Last read position: chr1:39,448,609
INFO 2026-06-08 08:46:55 MarkDuplicates Tracking 31224 as yet unmatched pairs. 442 records in RAM.
INFO 2026-06-08 08:46:57 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:42,697,179
INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 32707 as yet unmatched pairs. 409 records in RAM.
INFO 2026-06-08 08:46:59 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:44,645,254
INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 34414 as yet unmatched pairs. 289 records in RAM.
INFO 2026-06-08 08:47:01 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 2s. Last read position: chr1:46,799,229
INFO 2026-06-08 08:47:01 MarkDuplicates Tracking 36655 as yet unmatched pairs. 878 records in RAM.
INFO 2026-06-08 08:47:03 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 2s. Last read position: chr1:54,010,287
INFO 2026-06-08 08:47:03 MarkDuplicates Tracking 37605 as yet unmatched pairs. 143 records in RAM.
INFO 2026-06-08 08:47:05 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:64,470,851
INFO 2026-06-08 08:47:05 MarkDuplicates Tracking 39131 as yet unmatched pairs. 115 records in RAM.
INFO 2026-06-08 08:47:07 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:78,893,097
INFO 2026-06-08 08:47:07 MarkDuplicates Tracking 40717 as yet unmatched pairs. 131 records in RAM.
INFO 2026-06-08 08:47:08 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:91,716,363
INFO 2026-06-08 08:47:08 MarkDuplicates Tracking 42313 as yet unmatched pairs. 224 records in RAM.
INFO 2026-06-08 08:47:10 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 2s. Last read position: chr1:100,992,687
INFO 2026-06-08 08:47:10 MarkDuplicates Tracking 43796 as yet unmatched pairs. 131 records in RAM.
INFO 2026-06-08 08:47:12 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:109,917,346
INFO 2026-06-08 08:47:12 MarkDuplicates Tracking 45050 as yet unmatched pairs. 155 records in RAM.
INFO 2026-06-08 08:47:14 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:113,683,890
INFO 2026-06-08 08:47:14 MarkDuplicates Tracking 46741 as yet unmatched pairs. 292 records in RAM.
INFO 2026-06-08 08:47:15 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:116,400,955
INFO 2026-06-08 08:47:15 MarkDuplicates Tracking 49561 as yet unmatched pairs. 1778 records in RAM.
INFO 2026-06-08 08:47:16 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:119,953,555
INFO 2026-06-08 08:47:16 MarkDuplicates Tracking 51058 as yet unmatched pairs. 1870 records in RAM.
INFO 2026-06-08 08:47:18 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:145,856,650
INFO 2026-06-08 08:47:18 MarkDuplicates Tracking 50543 as yet unmatched pairs. 388 records in RAM.
INFO 2026-06-08 08:47:20 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:146,989,665
INFO 2026-06-08 08:47:20 MarkDuplicates Tracking 51665 as yet unmatched pairs. 531 records in RAM.
INFO 2026-06-08 08:47:21 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:149,492,638
INFO 2026-06-08 08:47:21 MarkDuplicates Tracking 51930 as yet unmatched pairs. 15 records in RAM.
INFO 2026-06-08 08:47:23 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:150,578,340
INFO 2026-06-08 08:47:23 MarkDuplicates Tracking 55732 as yet unmatched pairs. 2418 records in RAM.
INFO 2026-06-08 08:47:24 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:151,365,270
INFO 2026-06-08 08:47:24 MarkDuplicates Tracking 56282 as yet unmatched pairs. 1270 records in RAM.
INFO 2026-06-08 08:47:25 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:153,422,049
INFO 2026-06-08 08:47:25 MarkDuplicates Tracking 56920 as yet unmatched pairs. 326 records in RAM.
INFO 2026-06-08 08:47:27 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:154,170,651
INFO 2026-06-08 08:47:27 MarkDuplicates Tracking 65103 as yet unmatched pairs. 6844 records in RAM.
INFO 2026-06-08 08:47:29 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:154,966,468
INFO 2026-06-08 08:47:29 MarkDuplicates Tracking 60758 as yet unmatched pairs. 845 records in RAM.
INFO 2026-06-08 08:47:30 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:155,318,704
INFO 2026-06-08 08:47:30 MarkDuplicates Tracking 61680 as yet unmatched pairs. 385 records in RAM.
INFO 2026-06-08 08:47:32 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:156,135,955
INFO 2026-06-08 08:47:32 MarkDuplicates Tracking 64375 as yet unmatched pairs. 1203 records in RAM.
INFO 2026-06-08 08:47:33 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:156,939,707
INFO 2026-06-08 08:47:33 MarkDuplicates Tracking 65182 as yet unmatched pairs. 162 records in RAM.
INFO 2026-06-08 08:47:35 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:160,354,150
INFO 2026-06-08 08:47:35 MarkDuplicates Tracking 67138 as yet unmatched pairs. 573 records in RAM.
INFO 2026-06-08 08:47:37 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:161,544,729
INFO 2026-06-08 08:47:37 MarkDuplicates Tracking 69163 as yet unmatched pairs. 1152 records in RAM.
INFO 2026-06-08 08:47:38 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:169,106,914
INFO 2026-06-08 08:47:38 MarkDuplicates Tracking 71460 as yet unmatched pairs. 1844 records in RAM.
INFO 2026-06-08 08:47:40 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:174,702,184
INFO 2026-06-08 08:47:40 MarkDuplicates Tracking 71290 as yet unmatched pairs. 240 records in RAM.
INFO 2026-06-08 08:47:41 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:182,386,402
INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 75381 as yet unmatched pairs. 2633 records in RAM.
INFO 2026-06-08 08:47:43 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:185,300,452
INFO 2026-06-08 08:47:43 MarkDuplicates Tracking 74574 as yet unmatched pairs. 302 records in RAM.
INFO 2026-06-08 08:47:45 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 2s. Last read position: chr1:196,673,874
INFO 2026-06-08 08:47:45 MarkDuplicates Tracking 76323 as yet unmatched pairs. 596 records in RAM.
INFO 2026-06-08 08:47:46 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:201,874,314
INFO 2026-06-08 08:47:46 MarkDuplicates Tracking 77500 as yet unmatched pairs. 185 records in RAM.
INFO 2026-06-08 08:47:48 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:204,122,944
INFO 2026-06-08 08:47:48 MarkDuplicates Tracking 79035 as yet unmatched pairs. 105 records in RAM.
INFO 2026-06-08 08:47:50 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 2s. Last read position: chr1:207,022,206
INFO 2026-06-08 08:47:50 MarkDuplicates Tracking 81106 as yet unmatched pairs. 613 records in RAM.
INFO 2026-06-08 08:47:52 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:209,795,306
INFO 2026-06-08 08:47:52 MarkDuplicates Tracking 82514 as yet unmatched pairs. 359 records in RAM.
INFO 2026-06-08 08:47:54 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:223,541,791
INFO 2026-06-08 08:47:54 MarkDuplicates Tracking 84461 as yet unmatched pairs. 735 records in RAM.
INFO 2026-06-08 08:47:55 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:226,368,255
INFO 2026-06-08 08:47:55 MarkDuplicates Tracking 85515 as yet unmatched pairs. 350 records in RAM.
INFO 2026-06-08 08:47:58 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 2s. Last read position: chr1:230,778,921
INFO 2026-06-08 08:47:58 MarkDuplicates Tracking 87219 as yet unmatched pairs. 85 records in RAM.
INFO 2026-06-08 08:48:00 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:236,543,579
INFO 2026-06-08 08:48:00 MarkDuplicates Tracking 89255 as yet unmatched pairs. 204 records in RAM.
INFO 2026-06-08 08:48:01 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:247,157,203
INFO 2026-06-08 08:48:01 MarkDuplicates Tracking 91284 as yet unmatched pairs. 728 records in RAM.
INFO 2026-06-08 08:48:04 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 2s. Last read position: chr2:10,789,749
INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 92979 as yet unmatched pairs. 92640 records in RAM.
INFO 2026-06-08 08:48:06 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr2:20,204,065
INFO 2026-06-08 08:48:06 MarkDuplicates Tracking 98664 as yet unmatched pairs. 98312 records in RAM.
INFO 2026-06-08 08:48:08 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr2:25,744,069
INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 96053 as yet unmatched pairs. 95700 records in RAM.
INFO 2026-06-08 08:48:09 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr2:27,375,665
INFO 2026-06-08 08:48:09 MarkDuplicates Tracking 97759 as yet unmatched pairs. 97394 records in RAM.
INFO 2026-06-08 08:48:12 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 2s. Last read position: chr2:30,753,117
INFO 2026-06-08 08:48:12 MarkDuplicates Tracking 99326 as yet unmatched pairs. 98956 records in RAM.
INFO 2026-06-08 08:48:14 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,259
INFO 2026-06-08 08:48:14 MarkDuplicates Tracking 154206 as yet unmatched pairs. 97388 records in RAM.
INFO 2026-06-08 08:48:16 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:48:16 MarkDuplicates Tracking 681061 as yet unmatched pairs. 75651 records in RAM.
INFO 2026-06-08 08:48:17 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:48:17 MarkDuplicates Tracking 863040 as yet unmatched pairs. 68109 records in RAM.
INFO 2026-06-08 08:48:19 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 2s. Last read position: chr2:36,857,917
INFO 2026-06-08 08:48:19 MarkDuplicates Tracking 916445 as yet unmatched pairs. 65713 records in RAM.
INFO 2026-06-08 08:48:22 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 2s. Last read position: chr2:43,224,292
INFO 2026-06-08 08:48:22 MarkDuplicates Tracking 916406 as yet unmatched pairs. 65673 records in RAM.
INFO 2026-06-08 08:48:24 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 2s. Last read position: chr2:46,380,394
INFO 2026-06-08 08:48:24 MarkDuplicates Tracking 913973 as yet unmatched pairs. 63237 records in RAM.
INFO 2026-06-08 08:48:25 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:54,629,438
INFO 2026-06-08 08:48:25 MarkDuplicates Tracking 912434 as yet unmatched pairs. 61695 records in RAM.
INFO 2026-06-08 08:48:27 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:55,975,602
INFO 2026-06-08 08:48:27 MarkDuplicates Tracking 909600 as yet unmatched pairs. 58860 records in RAM.
INFO 2026-06-08 08:48:29 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 2s. Last read position: chr2:65,088,423
INFO 2026-06-08 08:48:29 MarkDuplicates Tracking 909301 as yet unmatched pairs. 58556 records in RAM.
INFO 2026-06-08 08:48:32 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 2s. Last read position: chr2:71,070,514
INFO 2026-06-08 08:48:32 MarkDuplicates Tracking 906844 as yet unmatched pairs. 56098 records in RAM.
INFO 2026-06-08 08:48:33 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:74,427,423
INFO 2026-06-08 08:48:33 MarkDuplicates Tracking 905267 as yet unmatched pairs. 54510 records in RAM.
INFO 2026-06-08 08:48:35 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 2s. Last read position: chr2:85,577,632
INFO 2026-06-08 08:48:35 MarkDuplicates Tracking 903787 as yet unmatched pairs. 53027 records in RAM.
INFO 2026-06-08 08:48:37 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:85,667,726
INFO 2026-06-08 08:48:37 MarkDuplicates Tracking 904489 as yet unmatched pairs. 53723 records in RAM.
INFO 2026-06-08 08:48:39 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:88,857,478
INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 913656 as yet unmatched pairs. 62889 records in RAM.
INFO 2026-06-08 08:48:40 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:96,291,773
INFO 2026-06-08 08:48:40 MarkDuplicates Tracking 899415 as yet unmatched pairs. 48642 records in RAM.
INFO 2026-06-08 08:48:42 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:101,005,990
INFO 2026-06-08 08:48:42 MarkDuplicates Tracking 898646 as yet unmatched pairs. 47863 records in RAM.
INFO 2026-06-08 08:48:45 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 2s. Last read position: chr2:108,764,458
INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 896934 as yet unmatched pairs. 46136 records in RAM.
INFO 2026-06-08 08:48:46 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:111,898,738
INFO 2026-06-08 08:48:46 MarkDuplicates Tracking 895217 as yet unmatched pairs. 44391 records in RAM.
INFO 2026-06-08 08:48:48 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:119,436,886
INFO 2026-06-08 08:48:48 MarkDuplicates Tracking 894133 as yet unmatched pairs. 43303 records in RAM.
INFO 2026-06-08 08:48:49 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:130,916,828
INFO 2026-06-08 08:48:49 MarkDuplicates Tracking 892375 as yet unmatched pairs. 41530 records in RAM.
INFO 2026-06-08 08:48:51 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:147,899,558
INFO 2026-06-08 08:48:51 MarkDuplicates Tracking 891164 as yet unmatched pairs. 40297 records in RAM.
INFO 2026-06-08 08:48:53 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:160,101,713
INFO 2026-06-08 08:48:53 MarkDuplicates Tracking 890490 as yet unmatched pairs. 39593 records in RAM.
INFO 2026-06-08 08:48:54 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:171,522,673
INFO 2026-06-08 08:48:54 MarkDuplicates Tracking 888822 as yet unmatched pairs. 37911 records in RAM.
INFO 2026-06-08 08:48:56 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:177,215,801
INFO 2026-06-08 08:48:56 MarkDuplicates Tracking 887193 as yet unmatched pairs. 36272 records in RAM.
INFO 2026-06-08 08:48:57 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:186,495,252
INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 885076 as yet unmatched pairs. 34154 records in RAM.
INFO 2026-06-08 08:48:59 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:188,993,451
INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 888282 as yet unmatched pairs. 37360 records in RAM.
INFO 2026-06-08 08:49:01 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:189,003,012
INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 890336 as yet unmatched pairs. 39414 records in RAM.
INFO 2026-06-08 08:49:02 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:189,011,654
INFO 2026-06-08 08:49:02 MarkDuplicates Tracking 884420 as yet unmatched pairs. 33494 records in RAM.
INFO 2026-06-08 08:49:04 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:190,976,885
INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 878836 as yet unmatched pairs. 27910 records in RAM.
INFO 2026-06-08 08:49:06 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 2s. Last read position: chr2:200,419,496
INFO 2026-06-08 08:49:06 MarkDuplicates Tracking 876600 as yet unmatched pairs. 25670 records in RAM.
INFO 2026-06-08 08:49:09 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 2s. Last read position: chr2:203,485,208
INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 875134 as yet unmatched pairs. 24182 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 2s. Last read position: chr2:215,361,549
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 885342 as yet unmatched pairs. 34388 records in RAM.
INFO 2026-06-08 08:49:13 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,086
INFO 2026-06-08 08:49:13 MarkDuplicates Tracking 886354 as yet unmatched pairs. 35399 records in RAM.
INFO 2026-06-08 08:49:14 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:215,376,626
INFO 2026-06-08 08:49:14 MarkDuplicates Tracking 883913 as yet unmatched pairs. 32957 records in RAM.
INFO 2026-06-08 08:49:16 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:215,386,719
INFO 2026-06-08 08:49:16 MarkDuplicates Tracking 875885 as yet unmatched pairs. 24929 records in RAM.
INFO 2026-06-08 08:49:18 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:215,404,442
INFO 2026-06-08 08:49:18 MarkDuplicates Tracking 875515 as yet unmatched pairs. 24551 records in RAM.
INFO 2026-06-08 08:49:19 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:215,409,992
INFO 2026-06-08 08:49:19 MarkDuplicates Tracking 875699 as yet unmatched pairs. 24729 records in RAM.
INFO 2026-06-08 08:49:21 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:215,428,219
INFO 2026-06-08 08:49:21 MarkDuplicates Tracking 872770 as yet unmatched pairs. 21800 records in RAM.
INFO 2026-06-08 08:49:23 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:216,499,979
INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 865532 as yet unmatched pairs. 14562 records in RAM.
INFO 2026-06-08 08:49:25 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:218,474,826
INFO 2026-06-08 08:49:25 MarkDuplicates Tracking 862309 as yet unmatched pairs. 11336 records in RAM.
INFO 2026-06-08 08:49:26 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:219,567,752
INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 860932 as yet unmatched pairs. 9958 records in RAM.
INFO 2026-06-08 08:49:28 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:230,359,008
INFO 2026-06-08 08:49:28 MarkDuplicates Tracking 859029 as yet unmatched pairs. 8052 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:233,352,979
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 857237 as yet unmatched pairs. 6257 records in RAM.
INFO 2026-06-08 08:49:31 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:237,359,374
INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 856951 as yet unmatched pairs. 5968 records in RAM.
INFO 2026-06-08 08:49:33 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr2:237,396,740
INFO 2026-06-08 08:49:33 MarkDuplicates Tracking 856109 as yet unmatched pairs. 5125 records in RAM.
INFO 2026-06-08 08:49:35 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 2s. Last read position: chr2:241,229,673
INFO 2026-06-08 08:49:35 MarkDuplicates Tracking 852934 as yet unmatched pairs. 1950 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 2s. Last read position: chr3:8,565,432
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 850561 as yet unmatched pairs. 48499 records in RAM.
INFO 2026-06-08 08:49:40 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 3s. Last read position: chr3:12,839,374
INFO 2026-06-08 08:49:40 MarkDuplicates Tracking 850527 as yet unmatched pairs. 48464 records in RAM.
INFO 2026-06-08 08:49:42 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:16,175,424
INFO 2026-06-08 08:49:42 MarkDuplicates Tracking 846875 as yet unmatched pairs. 44792 records in RAM.
INFO 2026-06-08 08:49:44 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr3:33,093,445
INFO 2026-06-08 08:49:44 MarkDuplicates Tracking 845587 as yet unmatched pairs. 43499 records in RAM.
INFO 2026-06-08 08:49:45 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:39,144,137
INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 844264 as yet unmatched pairs. 42167 records in RAM.
INFO 2026-06-08 08:49:47 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr3:42,658,890
INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 841854 as yet unmatched pairs. 39742 records in RAM.
INFO 2026-06-08 08:49:49 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:46,680,500
INFO 2026-06-08 08:49:49 MarkDuplicates Tracking 840328 as yet unmatched pairs. 38215 records in RAM.
INFO 2026-06-08 08:49:51 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:48,268,605
INFO 2026-06-08 08:49:51 MarkDuplicates Tracking 838367 as yet unmatched pairs. 36244 records in RAM.
INFO 2026-06-08 08:49:52 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:48,656,295
INFO 2026-06-08 08:49:52 MarkDuplicates Tracking 836427 as yet unmatched pairs. 34304 records in RAM.
INFO 2026-06-08 08:49:54 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:49,357,421
INFO 2026-06-08 08:49:54 MarkDuplicates Tracking 836964 as yet unmatched pairs. 34821 records in RAM.
INFO 2026-06-08 08:49:56 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:50,257,683
INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 833127 as yet unmatched pairs. 30984 records in RAM.
INFO 2026-06-08 08:49:57 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:52,370,003
INFO 2026-06-08 08:49:57 MarkDuplicates Tracking 830868 as yet unmatched pairs. 28720 records in RAM.
INFO 2026-06-08 08:49:59 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:53,119,932
INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 829040 as yet unmatched pairs. 26892 records in RAM.
INFO 2026-06-08 08:50:01 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:58,412,941
INFO 2026-06-08 08:50:01 MarkDuplicates Tracking 827294 as yet unmatched pairs. 25144 records in RAM.
INFO 2026-06-08 08:50:02 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:75,214,787
INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 825591 as yet unmatched pairs. 23429 records in RAM.
INFO 2026-06-08 08:50:04 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:100,810,315
INFO 2026-06-08 08:50:04 MarkDuplicates Tracking 824396 as yet unmatched pairs. 22216 records in RAM.
INFO 2026-06-08 08:50:05 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:112,639,574
INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 823944 as yet unmatched pairs. 21760 records in RAM.
INFO 2026-06-08 08:50:07 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr3:121,697,160
INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 821852 as yet unmatched pairs. 19652 records in RAM.
INFO 2026-06-08 08:50:09 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 2s. Last read position: chr3:124,970,669
INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 820109 as yet unmatched pairs. 17906 records in RAM.
INFO 2026-06-08 08:50:11 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:128,637,866
INFO 2026-06-08 08:50:11 MarkDuplicates Tracking 819635 as yet unmatched pairs. 17417 records in RAM.
INFO 2026-06-08 08:50:13 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 2s. Last read position: chr3:130,955,033
INFO 2026-06-08 08:50:13 MarkDuplicates Tracking 816997 as yet unmatched pairs. 14776 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:139,368,195
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 815550 as yet unmatched pairs. 13325 records in RAM.
INFO 2026-06-08 08:50:17 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:149,542,471
INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 813983 as yet unmatched pairs. 11749 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:158,804,343
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 813714 as yet unmatched pairs. 11475 records in RAM.
INFO 2026-06-08 08:50:20 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:172,346,326
INFO 2026-06-08 08:50:20 MarkDuplicates Tracking 811186 as yet unmatched pairs. 8944 records in RAM.
INFO 2026-06-08 08:50:22 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:183,988,705
INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 809161 as yet unmatched pairs. 6917 records in RAM.
INFO 2026-06-08 08:50:23 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:185,218,184
INFO 2026-06-08 08:50:23 MarkDuplicates Tracking 807460 as yet unmatched pairs. 5216 records in RAM.
INFO 2026-06-08 08:50:25 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:193,442,453
INFO 2026-06-08 08:50:25 MarkDuplicates Tracking 806534 as yet unmatched pairs. 4290 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:195,780,301
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 807211 as yet unmatched pairs. 4955 records in RAM.
INFO 2026-06-08 08:50:28 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:195,786,423
INFO 2026-06-08 08:50:28 MarkDuplicates Tracking 805086 as yet unmatched pairs. 2828 records in RAM.
INFO 2026-06-08 08:50:30 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr3:197,954,078
INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 802909 as yet unmatched pairs. 626 records in RAM.
INFO 2026-06-08 08:50:31 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr4:1,805,891
INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 801550 as yet unmatched pairs. 29080 records in RAM.
INFO 2026-06-08 08:50:33 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr4:5,466,736
INFO 2026-06-08 08:50:33 MarkDuplicates Tracking 798621 as yet unmatched pairs. 26150 records in RAM.
INFO 2026-06-08 08:50:35 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr4:13,601,134
INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 796676 as yet unmatched pairs. 24203 records in RAM.
INFO 2026-06-08 08:50:37 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr4:25,662,786
INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 829404 as yet unmatched pairs. 56926 records in RAM.
INFO 2026-06-08 08:50:39 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 2s. Last read position: chr4:25,673,104
INFO 2026-06-08 08:50:39 MarkDuplicates Tracking 816930 as yet unmatched pairs. 44452 records in RAM.
INFO 2026-06-08 08:50:41 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr4:25,676,620
INFO 2026-06-08 08:50:41 MarkDuplicates Tracking 798595 as yet unmatched pairs. 26117 records in RAM.
INFO 2026-06-08 08:50:43 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr4:39,927,986
INFO 2026-06-08 08:50:43 MarkDuplicates Tracking 791002 as yet unmatched pairs. 18524 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr4:54,280,468
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 790392 as yet unmatched pairs. 17905 records in RAM.
INFO 2026-06-08 08:50:46 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr4:67,701,031
INFO 2026-06-08 08:50:46 MarkDuplicates Tracking 787577 as yet unmatched pairs. 15076 records in RAM.
INFO 2026-06-08 08:50:48 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr4:76,002,834
INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 786184 as yet unmatched pairs. 13672 records in RAM.
INFO 2026-06-08 08:50:50 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr4:82,856,952
INFO 2026-06-08 08:50:50 MarkDuplicates Tracking 784627 as yet unmatched pairs. 12107 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr4:87,981,756
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 783427 as yet unmatched pairs. 10907 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr4:102,632,133
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 781618 as yet unmatched pairs. 9095 records in RAM.
INFO 2026-06-08 08:50:55 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr4:118,515,132
INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 779874 as yet unmatched pairs. 7344 records in RAM.
INFO 2026-06-08 08:50:57 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr4:125,451,480
INFO 2026-06-08 08:50:57 MarkDuplicates Tracking 778719 as yet unmatched pairs. 6187 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr4:147,634,308
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 777214 as yet unmatched pairs. 4680 records in RAM.
INFO 2026-06-08 08:51:00 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr4:153,788,571
INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 777800 as yet unmatched pairs. 5261 records in RAM.
INFO 2026-06-08 08:51:02 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr4:170,089,654
INFO 2026-06-08 08:51:02 MarkDuplicates Tracking 774323 as yet unmatched pairs. 1782 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr4:186,628,734
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 773126 as yet unmatched pairs. 580 records in RAM.
INFO 2026-06-08 08:51:06 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 2s. Last read position: chr5:9,224,824
INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 771073 as yet unmatched pairs. 51518 records in RAM.
INFO 2026-06-08 08:51:08 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 2s. Last read position: chr5:14,498,215
INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 769589 as yet unmatched pairs. 50033 records in RAM.
INFO 2026-06-08 08:51:10 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr5:35,871,100
INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 768027 as yet unmatched pairs. 48456 records in RAM.
INFO 2026-06-08 08:51:12 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr5:40,964,833
INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 767166 as yet unmatched pairs. 47594 records in RAM.
INFO 2026-06-08 08:51:13 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr5:55,941,774
INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 765710 as yet unmatched pairs. 46123 records in RAM.
INFO 2026-06-08 08:51:15 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr5:68,226,933
INFO 2026-06-08 08:51:15 MarkDuplicates Tracking 763745 as yet unmatched pairs. 44152 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:72,888,218
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 762749 as yet unmatched pairs. 43156 records in RAM.
INFO 2026-06-08 08:51:18 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:79,983,760
INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 761015 as yet unmatched pairs. 41407 records in RAM.
INFO 2026-06-08 08:51:20 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:87,394,400
INFO 2026-06-08 08:51:20 MarkDuplicates Tracking 759507 as yet unmatched pairs. 39888 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:97,013,766
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 758155 as yet unmatched pairs. 38531 records in RAM.
INFO 2026-06-08 08:51:23 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:115,870,100
INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 757007 as yet unmatched pairs. 37383 records in RAM.
INFO 2026-06-08 08:51:24 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr5:132,370,018
INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 754677 as yet unmatched pairs. 35051 records in RAM.
INFO 2026-06-08 08:51:26 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:135,370,077
INFO 2026-06-08 08:51:26 MarkDuplicates Tracking 753374 as yet unmatched pairs. 33748 records in RAM.
INFO 2026-06-08 08:51:28 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:138,571,119
INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 752571 as yet unmatched pairs. 32945 records in RAM.
INFO 2026-06-08 08:51:30 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr5:140,632,456
INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 751131 as yet unmatched pairs. 31502 records in RAM.
INFO 2026-06-08 08:51:31 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:141,351,021
INFO 2026-06-08 08:51:31 MarkDuplicates Tracking 748387 as yet unmatched pairs. 28758 records in RAM.
INFO 2026-06-08 08:51:35 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 3s. Last read position: chr5:142,314,650
INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 746954 as yet unmatched pairs. 27324 records in RAM.
INFO 2026-06-08 08:51:37 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 2s. Last read position: chr5:150,055,305
INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 745909 as yet unmatched pairs. 26268 records in RAM.
INFO 2026-06-08 08:51:38 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:150,401,995
INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 757004 as yet unmatched pairs. 37363 records in RAM.
INFO 2026-06-08 08:51:40 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,237
INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 835383 as yet unmatched pairs. 115742 records in RAM.
INFO 2026-06-08 08:51:42 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:150,403,292
INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 787916 as yet unmatched pairs. 68275 records in RAM.
INFO 2026-06-08 08:51:44 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,112
INFO 2026-06-08 08:51:44 MarkDuplicates Tracking 797538 as yet unmatched pairs. 77896 records in RAM.
INFO 2026-06-08 08:51:45 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,304
INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 806220 as yet unmatched pairs. 86573 records in RAM.
INFO 2026-06-08 08:51:47 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr5:150,407,249
INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 767499 as yet unmatched pairs. 47851 records in RAM.
INFO 2026-06-08 08:51:49 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr5:151,030,560
INFO 2026-06-08 08:51:49 MarkDuplicates Tracking 733586 as yet unmatched pairs. 13938 records in RAM.
INFO 2026-06-08 08:51:50 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr5:151,786,583
INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 732442 as yet unmatched pairs. 12793 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr5:163,413,248
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 729908 as yet unmatched pairs. 10257 records in RAM.
INFO 2026-06-08 08:51:53 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr5:171,391,731
INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 731539 as yet unmatched pairs. 11883 records in RAM.
INFO 2026-06-08 08:51:55 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr5:173,616,311
INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 727142 as yet unmatched pairs. 7485 records in RAM.
INFO 2026-06-08 08:51:57 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr5:177,538,837
INFO 2026-06-08 08:51:57 MarkDuplicates Tracking 725576 as yet unmatched pairs. 5917 records in RAM.
INFO 2026-06-08 08:51:58 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr5:179,774,266
INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 724163 as yet unmatched pairs. 4498 records in RAM.
INFO 2026-06-08 08:52:00 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr5:180,590,136
INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 728545 as yet unmatched pairs. 8880 records in RAM.
INFO 2026-06-08 08:52:02 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:632,940
INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 719715 as yet unmatched pairs. 50607 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:7,303,584
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 718295 as yet unmatched pairs. 49181 records in RAM.
INFO 2026-06-08 08:52:05 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:12,123,472
INFO 2026-06-08 08:52:05 MarkDuplicates Tracking 716337 as yet unmatched pairs. 47223 records in RAM.
INFO 2026-06-08 08:52:08 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 2s. Last read position: chr6:26,020,470
INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 714719 as yet unmatched pairs. 45596 records in RAM.
INFO 2026-06-08 08:52:10 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 2s. Last read position: chr6:27,831,266
INFO 2026-06-08 08:52:10 MarkDuplicates Tracking 714840 as yet unmatched pairs. 45713 records in RAM.
INFO 2026-06-08 08:52:12 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr6:29,945,505
INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 713545 as yet unmatched pairs. 44418 records in RAM.
INFO 2026-06-08 08:52:14 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr6:30,894,599
INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 710597 as yet unmatched pairs. 41470 records in RAM.
INFO 2026-06-08 08:52:15 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr6:31,356,173
INFO 2026-06-08 08:52:15 MarkDuplicates Tracking 714002 as yet unmatched pairs. 44870 records in RAM.
INFO 2026-06-08 08:52:17 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr6:31,647,635
INFO 2026-06-08 08:52:17 MarkDuplicates Tracking 707211 as yet unmatched pairs. 38079 records in RAM.
INFO 2026-06-08 08:52:18 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr6:31,943,499
INFO 2026-06-08 08:52:18 MarkDuplicates Tracking 705488 as yet unmatched pairs. 36347 records in RAM.
INFO 2026-06-08 08:52:20 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr6:32,049,318
INFO 2026-06-08 08:52:20 MarkDuplicates Tracking 704537 as yet unmatched pairs. 35396 records in RAM.
INFO 2026-06-08 08:52:21 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:32,442,488
INFO 2026-06-08 08:52:21 MarkDuplicates Tracking 710824 as yet unmatched pairs. 41683 records in RAM.
INFO 2026-06-08 08:52:23 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:32,642,228
INFO 2026-06-08 08:52:23 MarkDuplicates Tracking 703435 as yet unmatched pairs. 34293 records in RAM.
INFO 2026-06-08 08:52:25 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr6:33,004,641
INFO 2026-06-08 08:52:25 MarkDuplicates Tracking 700303 as yet unmatched pairs. 31161 records in RAM.
INFO 2026-06-08 08:52:26 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr6:33,296,027
INFO 2026-06-08 08:52:26 MarkDuplicates Tracking 698359 as yet unmatched pairs. 29216 records in RAM.
INFO 2026-06-08 08:52:28 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr6:33,788,505
INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 696485 as yet unmatched pairs. 27334 records in RAM.
INFO 2026-06-08 08:52:30 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 2s. Last read position: chr6:36,972,771
INFO 2026-06-08 08:52:30 MarkDuplicates Tracking 696445 as yet unmatched pairs. 27294 records in RAM.
INFO 2026-06-08 08:52:31 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr6:42,989,638
INFO 2026-06-08 08:52:31 MarkDuplicates Tracking 693319 as yet unmatched pairs. 24166 records in RAM.
INFO 2026-06-08 08:52:33 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:44,247,184
INFO 2026-06-08 08:52:33 MarkDuplicates Tracking 692396 as yet unmatched pairs. 23241 records in RAM.
INFO 2026-06-08 08:52:34 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr6:52,506,084
INFO 2026-06-08 08:52:34 MarkDuplicates Tracking 690144 as yet unmatched pairs. 20983 records in RAM.
INFO 2026-06-08 08:52:36 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:63,211,763
INFO 2026-06-08 08:52:36 MarkDuplicates Tracking 688991 as yet unmatched pairs. 19826 records in RAM.
INFO 2026-06-08 08:52:38 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:75,194,902
INFO 2026-06-08 08:52:38 MarkDuplicates Tracking 687904 as yet unmatched pairs. 18738 records in RAM.
INFO 2026-06-08 08:52:40 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 2s. Last read position: chr6:87,675,491
INFO 2026-06-08 08:52:40 MarkDuplicates Tracking 686172 as yet unmatched pairs. 17004 records in RAM.
INFO 2026-06-08 08:52:42 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr6:106,519,914
INFO 2026-06-08 08:52:42 MarkDuplicates Tracking 684656 as yet unmatched pairs. 15488 records in RAM.
INFO 2026-06-08 08:52:44 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr6:112,109,373
INFO 2026-06-08 08:52:44 MarkDuplicates Tracking 683149 as yet unmatched pairs. 13981 records in RAM.
INFO 2026-06-08 08:52:45 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr6:117,409,515
INFO 2026-06-08 08:52:45 MarkDuplicates Tracking 682737 as yet unmatched pairs. 13567 records in RAM.
INFO 2026-06-08 08:52:47 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr6:129,634,042
INFO 2026-06-08 08:52:47 MarkDuplicates Tracking 679621 as yet unmatched pairs. 10448 records in RAM.
INFO 2026-06-08 08:52:48 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr6:137,204,484
INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 679861 as yet unmatched pairs. 10688 records in RAM.
INFO 2026-06-08 08:52:50 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr6:144,462,794
INFO 2026-06-08 08:52:50 MarkDuplicates Tracking 676562 as yet unmatched pairs. 7378 records in RAM.
INFO 2026-06-08 08:52:52 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr6:152,148,166
INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 674939 as yet unmatched pairs. 5749 records in RAM.
INFO 2026-06-08 08:52:53 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr6:158,766,885
INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 673985 as yet unmatched pairs. 4786 records in RAM.
INFO 2026-06-08 08:52:55 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr6:160,033,000
INFO 2026-06-08 08:52:55 MarkDuplicates Tracking 671896 as yet unmatched pairs. 2696 records in RAM.
INFO 2026-06-08 08:52:57 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr6:169,225,295
INFO 2026-06-08 08:52:57 MarkDuplicates Tracking 670165 as yet unmatched pairs. 943 records in RAM.
INFO 2026-06-08 08:52:59 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 2s. Last read position: chr7:1,478,846
INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 668493 as yet unmatched pairs. 56209 records in RAM.
INFO 2026-06-08 08:53:01 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr7:4,011,071
INFO 2026-06-08 08:53:01 MarkDuplicates Tracking 665528 as yet unmatched pairs. 53240 records in RAM.
INFO 2026-06-08 08:53:02 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:5,388,811
INFO 2026-06-08 08:53:02 MarkDuplicates Tracking 663863 as yet unmatched pairs. 51572 records in RAM.
INFO 2026-06-08 08:53:06 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 3s. Last read position: chr7:5,528,574
INFO 2026-06-08 08:53:06 MarkDuplicates Tracking 674829 as yet unmatched pairs. 62523 records in RAM.
INFO 2026-06-08 08:53:08 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:6,374,709
INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 660963 as yet unmatched pairs. 48656 records in RAM.
INFO 2026-06-08 08:53:09 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr7:16,783,666
INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 658442 as yet unmatched pairs. 46129 records in RAM.
INFO 2026-06-08 08:53:11 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:22,818,015
INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 658099 as yet unmatched pairs. 45784 records in RAM.
INFO 2026-06-08 08:53:13 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr7:28,957,638
INFO 2026-06-08 08:53:13 MarkDuplicates Tracking 655723 as yet unmatched pairs. 43403 records in RAM.
INFO 2026-06-08 08:53:14 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:35,903,098
INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 654338 as yet unmatched pairs. 42015 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr7:44,052,896
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 653135 as yet unmatched pairs. 40804 records in RAM.
INFO 2026-06-08 08:53:17 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:44,697,747
INFO 2026-06-08 08:53:17 MarkDuplicates Tracking 651432 as yet unmatched pairs. 39094 records in RAM.
INFO 2026-06-08 08:53:19 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr7:50,399,946
INFO 2026-06-08 08:53:19 MarkDuplicates Tracking 649145 as yet unmatched pairs. 36806 records in RAM.
INFO 2026-06-08 08:53:21 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr7:55,192,791
INFO 2026-06-08 08:53:21 MarkDuplicates Tracking 648936 as yet unmatched pairs. 36589 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:66,089,614
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 645976 as yet unmatched pairs. 33626 records in RAM.
INFO 2026-06-08 08:53:23 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:73,297,434
INFO 2026-06-08 08:53:23 MarkDuplicates Tracking 644818 as yet unmatched pairs. 32459 records in RAM.
INFO 2026-06-08 08:53:25 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr7:74,099,039
INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 642897 as yet unmatched pairs. 30538 records in RAM.
INFO 2026-06-08 08:53:27 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr7:75,411,533
INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 641288 as yet unmatched pairs. 28915 records in RAM.
INFO 2026-06-08 08:53:29 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 2s. Last read position: chr7:76,302,932
INFO 2026-06-08 08:53:29 MarkDuplicates Tracking 653063 as yet unmatched pairs. 40689 records in RAM.
INFO 2026-06-08 08:53:31 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:76,540,179
INFO 2026-06-08 08:53:31 MarkDuplicates Tracking 637661 as yet unmatched pairs. 25287 records in RAM.
INFO 2026-06-08 08:53:33 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 2s. Last read position: chr7:86,880,417
INFO 2026-06-08 08:53:33 MarkDuplicates Tracking 636620 as yet unmatched pairs. 24235 records in RAM.
INFO 2026-06-08 08:53:35 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr7:90,297,737
INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 635168 as yet unmatched pairs. 22777 records in RAM.
INFO 2026-06-08 08:53:36 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr7:92,108,509
INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 634907 as yet unmatched pairs. 22507 records in RAM.
INFO 2026-06-08 08:54:40 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 63s. Last read position: chr7:94,408,776
INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 640691 as yet unmatched pairs. 28290 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 2s. Last read position: chr7:94,421,926
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 637821 as yet unmatched pairs. 25420 records in RAM.
INFO 2026-06-08 08:54:44 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr7:97,928,738
INFO 2026-06-08 08:54:44 MarkDuplicates Tracking 628358 as yet unmatched pairs. 15936 records in RAM.
INFO 2026-06-08 08:54:46 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr7:100,220,910
INFO 2026-06-08 08:54:46 MarkDuplicates Tracking 626723 as yet unmatched pairs. 14297 records in RAM.
INFO 2026-06-08 08:54:47 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr7:101,208,865
INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 624937 as yet unmatched pairs. 12508 records in RAM.
INFO 2026-06-08 08:54:49 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr7:105,106,580
INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 623757 as yet unmatched pairs. 11327 records in RAM.
INFO 2026-06-08 08:54:50 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr7:116,252,392
INFO 2026-06-08 08:54:50 MarkDuplicates Tracking 622315 as yet unmatched pairs. 9885 records in RAM.
INFO 2026-06-08 08:54:52 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr7:128,084,731
INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 622256 as yet unmatched pairs. 9825 records in RAM.
INFO 2026-06-08 08:54:53 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr7:135,164,548
INFO 2026-06-08 08:54:53 MarkDuplicates Tracking 619422 as yet unmatched pairs. 6988 records in RAM.
INFO 2026-06-08 08:54:55 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr7:140,801,502
INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 618169 as yet unmatched pairs. 5723 records in RAM.
INFO 2026-06-08 08:54:56 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr7:144,367,102
INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 616314 as yet unmatched pairs. 3867 records in RAM.
INFO 2026-06-08 08:54:58 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr7:151,076,057
INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 614501 as yet unmatched pairs. 2048 records in RAM.
INFO 2026-06-08 08:55:00 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr8:1,898,451
INFO 2026-06-08 08:55:00 MarkDuplicates Tracking 612449 as yet unmatched pairs. 35637 records in RAM.
INFO 2026-06-08 08:55:03 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 2s. Last read position: chr8:13,086,289
INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 610775 as yet unmatched pairs. 33958 records in RAM.
INFO 2026-06-08 08:55:05 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr8:22,138,714
INFO 2026-06-08 08:55:05 MarkDuplicates Tracking 609673 as yet unmatched pairs. 32855 records in RAM.
INFO 2026-06-08 08:55:06 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr8:22,606,607
INFO 2026-06-08 08:55:06 MarkDuplicates Tracking 608081 as yet unmatched pairs. 31248 records in RAM.
INFO 2026-06-08 08:55:08 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr8:27,444,261
INFO 2026-06-08 08:55:08 MarkDuplicates Tracking 605662 as yet unmatched pairs. 28829 records in RAM.
INFO 2026-06-08 08:55:10 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr8:37,837,753
INFO 2026-06-08 08:55:10 MarkDuplicates Tracking 604118 as yet unmatched pairs. 27281 records in RAM.
INFO 2026-06-08 08:55:11 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:38,846,760
INFO 2026-06-08 08:55:11 MarkDuplicates Tracking 603359 as yet unmatched pairs. 26522 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr8:47,737,488
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 603630 as yet unmatched pairs. 26792 records in RAM.
INFO 2026-06-08 08:55:14 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr8:56,074,118
INFO 2026-06-08 08:55:14 MarkDuplicates Tracking 601056 as yet unmatched pairs. 24209 records in RAM.
INFO 2026-06-08 08:55:16 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr8:70,131,838
INFO 2026-06-08 08:55:16 MarkDuplicates Tracking 598265 as yet unmatched pairs. 21405 records in RAM.
INFO 2026-06-08 08:55:18 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr8:89,958,755
INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 596033 as yet unmatched pairs. 19166 records in RAM.
INFO 2026-06-08 08:55:19 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr8:100,258,763
INFO 2026-06-08 08:55:19 MarkDuplicates Tracking 594909 as yet unmatched pairs. 18018 records in RAM.
INFO 2026-06-08 08:55:21 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr8:102,858,106
INFO 2026-06-08 08:55:21 MarkDuplicates Tracking 592831 as yet unmatched pairs. 15918 records in RAM.
INFO 2026-06-08 08:55:23 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr8:120,279,967
INFO 2026-06-08 08:55:23 MarkDuplicates Tracking 591539 as yet unmatched pairs. 14621 records in RAM.
INFO 2026-06-08 08:55:24 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr8:132,010,815
INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 589812 as yet unmatched pairs. 12891 records in RAM.
INFO 2026-06-08 08:55:26 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr8:143,562,095
INFO 2026-06-08 08:55:26 MarkDuplicates Tracking 587962 as yet unmatched pairs. 11041 records in RAM.
INFO 2026-06-08 08:55:27 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,976
INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 586770 as yet unmatched pairs. 9849 records in RAM.
INFO 2026-06-08 08:55:29 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,774
INFO 2026-06-08 08:55:29 MarkDuplicates Tracking 586504 as yet unmatched pairs. 9583 records in RAM.
INFO 2026-06-08 08:55:30 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,964
INFO 2026-06-08 08:55:30 MarkDuplicates Tracking 584781 as yet unmatched pairs. 7860 records in RAM.
INFO 2026-06-08 08:55:31 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr8:143,922,260
INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 582856 as yet unmatched pairs. 5935 records in RAM.
INFO 2026-06-08 08:55:33 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr8:144,057,888
INFO 2026-06-08 08:55:33 MarkDuplicates Tracking 579325 as yet unmatched pairs. 2397 records in RAM.
INFO 2026-06-08 08:55:35 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr8:144,850,860
INFO 2026-06-08 08:55:35 MarkDuplicates Tracking 577173 as yet unmatched pairs. 244 records in RAM.
INFO 2026-06-08 08:55:36 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr9:14,179,740
INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 577093 as yet unmatched pairs. 35727 records in RAM.
INFO 2026-06-08 08:55:38 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr9:33,294,778
INFO 2026-06-08 08:55:38 MarkDuplicates Tracking 574119 as yet unmatched pairs. 32750 records in RAM.
INFO 2026-06-08 08:55:40 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr9:35,389,902
INFO 2026-06-08 08:55:40 MarkDuplicates Tracking 572554 as yet unmatched pairs. 31185 records in RAM.
INFO 2026-06-08 08:55:41 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr9:37,422,732
INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 570934 as yet unmatched pairs. 29562 records in RAM.
INFO 2026-06-08 08:55:43 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr9:73,166,116
INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 571301 as yet unmatched pairs. 29929 records in RAM.
INFO 2026-06-08 08:55:45 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 2s. Last read position: chr9:87,706,601
INFO 2026-06-08 08:55:45 MarkDuplicates Tracking 568291 as yet unmatched pairs. 26913 records in RAM.
INFO 2026-06-08 08:55:47 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:94,301,282
INFO 2026-06-08 08:55:47 MarkDuplicates Tracking 565995 as yet unmatched pairs. 24616 records in RAM.
INFO 2026-06-08 08:55:49 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 2s. Last read position: chr9:100,052,510
INFO 2026-06-08 08:55:49 MarkDuplicates Tracking 565251 as yet unmatched pairs. 23871 records in RAM.
INFO 2026-06-08 08:55:51 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 2s. Last read position: chr9:110,408,007
INFO 2026-06-08 08:55:51 MarkDuplicates Tracking 562742 as yet unmatched pairs. 21348 records in RAM.
INFO 2026-06-08 08:55:53 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr9:114,362,427
INFO 2026-06-08 08:55:53 MarkDuplicates Tracking 561242 as yet unmatched pairs. 19842 records in RAM.
INFO 2026-06-08 08:55:54 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr9:121,096,438
INFO 2026-06-08 08:55:54 MarkDuplicates Tracking 559581 as yet unmatched pairs. 18181 records in RAM.
INFO 2026-06-08 08:55:56 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr9:124,353,630
INFO 2026-06-08 08:55:56 MarkDuplicates Tracking 558109 as yet unmatched pairs. 16704 records in RAM.
INFO 2026-06-08 08:55:57 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr9:127,510,289
INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 556945 as yet unmatched pairs. 15540 records in RAM.
INFO 2026-06-08 08:55:59 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr9:128,424,170
INFO 2026-06-08 08:55:59 MarkDuplicates Tracking 554318 as yet unmatched pairs. 12910 records in RAM.
INFO 2026-06-08 08:56:01 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr9:129,638,143
INFO 2026-06-08 08:56:01 MarkDuplicates Tracking 552462 as yet unmatched pairs. 11054 records in RAM.
INFO 2026-06-08 08:56:02 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr9:131,475,467
INFO 2026-06-08 08:56:02 MarkDuplicates Tracking 551528 as yet unmatched pairs. 10118 records in RAM.
INFO 2026-06-08 08:56:04 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr9:133,364,945
INFO 2026-06-08 08:56:04 MarkDuplicates Tracking 550333 as yet unmatched pairs. 8923 records in RAM.
INFO 2026-06-08 08:56:06 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr9:134,801,988
INFO 2026-06-08 08:56:06 MarkDuplicates Tracking 549201 as yet unmatched pairs. 7791 records in RAM.
INFO 2026-06-08 08:56:07 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr9:136,474,422
INFO 2026-06-08 08:56:07 MarkDuplicates Tracking 546041 as yet unmatched pairs. 4631 records in RAM.
INFO 2026-06-08 08:56:09 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr9:137,012,774
INFO 2026-06-08 08:56:09 MarkDuplicates Tracking 543825 as yet unmatched pairs. 2413 records in RAM.
INFO 2026-06-08 08:56:10 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr9:138,231,030
INFO 2026-06-08 08:56:10 MarkDuplicates Tracking 541550 as yet unmatched pairs. 138 records in RAM.
INFO 2026-06-08 08:56:12 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 2s. Last read position: chr10:11,314,249
INFO 2026-06-08 08:56:12 MarkDuplicates Tracking 540199 as yet unmatched pairs. 25904 records in RAM.
INFO 2026-06-08 08:56:14 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr10:21,515,008
INFO 2026-06-08 08:56:14 MarkDuplicates Tracking 538397 as yet unmatched pairs. 24094 records in RAM.
INFO 2026-06-08 08:56:16 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr10:31,524,019
INFO 2026-06-08 08:56:16 MarkDuplicates Tracking 537063 as yet unmatched pairs. 22757 records in RAM.
INFO 2026-06-08 08:56:17 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr10:33,334,324
INFO 2026-06-08 08:56:17 MarkDuplicates Tracking 535916 as yet unmatched pairs. 21609 records in RAM.
INFO 2026-06-08 08:56:19 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr10:46,012,918
INFO 2026-06-08 08:56:19 MarkDuplicates Tracking 536542 as yet unmatched pairs. 22231 records in RAM.
INFO 2026-06-08 08:56:21 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr10:50,343,836
INFO 2026-06-08 08:56:21 MarkDuplicates Tracking 533112 as yet unmatched pairs. 18801 records in RAM.
INFO 2026-06-08 08:56:22 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr10:69,166,041
INFO 2026-06-08 08:56:22 MarkDuplicates Tracking 531632 as yet unmatched pairs. 17320 records in RAM.
INFO 2026-06-08 08:56:24 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr10:73,246,805
INFO 2026-06-08 08:56:24 MarkDuplicates Tracking 529798 as yet unmatched pairs. 15479 records in RAM.
INFO 2026-06-08 08:56:25 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr10:78,035,596
INFO 2026-06-08 08:56:25 MarkDuplicates Tracking 529908 as yet unmatched pairs. 15589 records in RAM.
INFO 2026-06-08 08:56:27 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr10:79,844,124
INFO 2026-06-08 08:56:27 MarkDuplicates Tracking 526689 as yet unmatched pairs. 12366 records in RAM.
INFO 2026-06-08 08:56:28 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr10:88,941,814
INFO 2026-06-08 08:56:28 MarkDuplicates Tracking 526076 as yet unmatched pairs. 11744 records in RAM.
INFO 2026-06-08 08:56:30 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr10:95,866,710
INFO 2026-06-08 08:56:30 MarkDuplicates Tracking 524268 as yet unmatched pairs. 9931 records in RAM.
INFO 2026-06-08 08:56:32 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr10:100,986,900
INFO 2026-06-08 08:56:32 MarkDuplicates Tracking 522432 as yet unmatched pairs. 8088 records in RAM.
INFO 2026-06-08 08:56:33 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr10:103,602,215
INFO 2026-06-08 08:56:33 MarkDuplicates Tracking 521440 as yet unmatched pairs. 7096 records in RAM.
INFO 2026-06-08 08:56:35 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr10:114,044,765
INFO 2026-06-08 08:56:35 MarkDuplicates Tracking 518797 as yet unmatched pairs. 4453 records in RAM.
INFO 2026-06-08 08:56:36 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr10:122,084,890
INFO 2026-06-08 08:56:36 MarkDuplicates Tracking 517371 as yet unmatched pairs. 3016 records in RAM.
INFO 2026-06-08 08:56:38 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr10:123,761,993
INFO 2026-06-08 08:56:38 MarkDuplicates Tracking 516156 as yet unmatched pairs. 1781 records in RAM.
INFO 2026-06-08 08:56:40 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 2s. Last read position: chr11:210,579
INFO 2026-06-08 08:56:40 MarkDuplicates Tracking 514653 as yet unmatched pairs. 63999 records in RAM.
INFO 2026-06-08 08:56:43 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 2s. Last read position: chr11:394,297
INFO 2026-06-08 08:56:43 MarkDuplicates Tracking 512934 as yet unmatched pairs. 62280 records in RAM.
INFO 2026-06-08 08:56:45 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 2s. Last read position: chr11:838,130
INFO 2026-06-08 08:56:45 MarkDuplicates Tracking 511397 as yet unmatched pairs. 60743 records in RAM.
INFO 2026-06-08 08:56:47 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr11:1,242,108
INFO 2026-06-08 08:56:47 MarkDuplicates Tracking 508954 as yet unmatched pairs. 58285 records in RAM.
INFO 2026-06-08 08:56:48 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,288
INFO 2026-06-08 08:56:48 MarkDuplicates Tracking 509325 as yet unmatched pairs. 58656 records in RAM.
INFO 2026-06-08 08:56:50 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:1,470,138
INFO 2026-06-08 08:56:50 MarkDuplicates Tracking 507119 as yet unmatched pairs. 56449 records in RAM.
INFO 2026-06-08 08:56:51 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr11:2,395,881
INFO 2026-06-08 08:56:51 MarkDuplicates Tracking 507757 as yet unmatched pairs. 57087 records in RAM.
INFO 2026-06-08 08:56:53 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:6,546,290
INFO 2026-06-08 08:56:53 MarkDuplicates Tracking 503310 as yet unmatched pairs. 52627 records in RAM.
INFO 2026-06-08 08:56:55 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr11:9,414,334
INFO 2026-06-08 08:56:55 MarkDuplicates Tracking 502181 as yet unmatched pairs. 51498 records in RAM.
INFO 2026-06-08 08:56:56 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:12,504,420
INFO 2026-06-08 08:56:56 MarkDuplicates Tracking 500553 as yet unmatched pairs. 49870 records in RAM.
INFO 2026-06-08 08:56:58 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr11:18,396,827
INFO 2026-06-08 08:56:58 MarkDuplicates Tracking 501833 as yet unmatched pairs. 51150 records in RAM.
INFO 2026-06-08 08:56:59 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:33,710,311
INFO 2026-06-08 08:56:59 MarkDuplicates Tracking 500958 as yet unmatched pairs. 50272 records in RAM.
INFO 2026-06-08 08:57:01 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:44,078,687
INFO 2026-06-08 08:57:01 MarkDuplicates Tracking 495578 as yet unmatched pairs. 44889 records in RAM.
INFO 2026-06-08 08:57:02 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:46,818,420
INFO 2026-06-08 08:57:02 MarkDuplicates Tracking 493973 as yet unmatched pairs. 43283 records in RAM.
INFO 2026-06-08 08:57:04 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:57,313,241
INFO 2026-06-08 08:57:04 MarkDuplicates Tracking 492334 as yet unmatched pairs. 41644 records in RAM.
INFO 2026-06-08 08:57:06 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:58,617,648
INFO 2026-06-08 08:57:06 MarkDuplicates Tracking 490614 as yet unmatched pairs. 39923 records in RAM.
INFO 2026-06-08 08:57:07 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr11:61,326,826
INFO 2026-06-08 08:57:07 MarkDuplicates Tracking 489135 as yet unmatched pairs. 38444 records in RAM.
INFO 2026-06-08 08:57:09 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:62,518,790
INFO 2026-06-08 08:57:09 MarkDuplicates Tracking 488497 as yet unmatched pairs. 37799 records in RAM.
INFO 2026-06-08 08:57:10 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr11:62,527,067
INFO 2026-06-08 08:57:10 MarkDuplicates Tracking 487753 as yet unmatched pairs. 37055 records in RAM.
INFO 2026-06-08 08:57:12 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:62,535,979
INFO 2026-06-08 08:57:12 MarkDuplicates Tracking 485474 as yet unmatched pairs. 34771 records in RAM.
INFO 2026-06-08 08:57:14 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:62,800,450
INFO 2026-06-08 08:57:14 MarkDuplicates Tracking 483326 as yet unmatched pairs. 32623 records in RAM.
INFO 2026-06-08 08:57:15 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:64,315,782
INFO 2026-06-08 08:57:15 MarkDuplicates Tracking 481048 as yet unmatched pairs. 30344 records in RAM.
INFO 2026-06-08 08:57:17 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 2s. Last read position: chr11:65,122,398
INFO 2026-06-08 08:57:17 MarkDuplicates Tracking 479430 as yet unmatched pairs. 28725 records in RAM.
INFO 2026-06-08 08:57:19 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:65,613,313
INFO 2026-06-08 08:57:19 MarkDuplicates Tracking 477291 as yet unmatched pairs. 26584 records in RAM.
INFO 2026-06-08 08:57:21 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:66,061,977
INFO 2026-06-08 08:57:21 MarkDuplicates Tracking 475445 as yet unmatched pairs. 24738 records in RAM.
INFO 2026-06-08 08:57:22 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:67,231,817
INFO 2026-06-08 08:57:22 MarkDuplicates Tracking 473525 as yet unmatched pairs. 22817 records in RAM.
INFO 2026-06-08 08:57:24 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:67,999,529
INFO 2026-06-08 08:57:24 MarkDuplicates Tracking 471211 as yet unmatched pairs. 20498 records in RAM.
INFO 2026-06-08 08:57:26 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:70,203,601
INFO 2026-06-08 08:57:26 MarkDuplicates Tracking 469149 as yet unmatched pairs. 18431 records in RAM.
INFO 2026-06-08 08:57:27 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:72,686,111
INFO 2026-06-08 08:57:27 MarkDuplicates Tracking 468716 as yet unmatched pairs. 17992 records in RAM.
INFO 2026-06-08 08:57:29 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr11:75,169,300
INFO 2026-06-08 08:57:29 MarkDuplicates Tracking 466084 as yet unmatched pairs. 15359 records in RAM.
INFO 2026-06-08 08:57:30 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:78,226,468
INFO 2026-06-08 08:57:30 MarkDuplicates Tracking 463850 as yet unmatched pairs. 13124 records in RAM.
INFO 2026-06-08 08:57:32 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:93,784,577
INFO 2026-06-08 08:57:32 MarkDuplicates Tracking 462489 as yet unmatched pairs. 11757 records in RAM.
INFO 2026-06-08 08:57:34 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:102,778,725
INFO 2026-06-08 08:57:34 MarkDuplicates Tracking 461206 as yet unmatched pairs. 10474 records in RAM.
INFO 2026-06-08 08:57:36 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr11:112,088,867
INFO 2026-06-08 08:57:36 MarkDuplicates Tracking 460677 as yet unmatched pairs. 9945 records in RAM.
INFO 2026-06-08 08:57:37 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:117,293,871
INFO 2026-06-08 08:57:37 MarkDuplicates Tracking 458032 as yet unmatched pairs. 7296 records in RAM.
INFO 2026-06-08 08:57:39 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:118,898,408
INFO 2026-06-08 08:57:39 MarkDuplicates Tracking 456650 as yet unmatched pairs. 5913 records in RAM.
INFO 2026-06-08 08:57:42 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 3s. Last read position: chr11:120,128,474
INFO 2026-06-08 08:57:42 MarkDuplicates Tracking 455138 as yet unmatched pairs. 4399 records in RAM.
INFO 2026-06-08 08:57:44 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr11:124,767,324
INFO 2026-06-08 08:57:44 MarkDuplicates Tracking 453321 as yet unmatched pairs. 2581 records in RAM.
INFO 2026-06-08 08:57:45 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr11:130,129,188
INFO 2026-06-08 08:57:45 MarkDuplicates Tracking 452960 as yet unmatched pairs. 2213 records in RAM.
INFO 2026-06-08 08:57:47 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 2s. Last read position: chr12:908,680
INFO 2026-06-08 08:57:47 MarkDuplicates Tracking 450287 as yet unmatched pairs. 56831 records in RAM.
INFO 2026-06-08 08:57:49 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr12:6,073,626
INFO 2026-06-08 08:57:49 MarkDuplicates Tracking 449532 as yet unmatched pairs. 56064 records in RAM.
INFO 2026-06-08 08:57:51 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr12:6,770,458
INFO 2026-06-08 08:57:51 MarkDuplicates Tracking 447297 as yet unmatched pairs. 53827 records in RAM.
INFO 2026-06-08 08:57:52 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr12:7,081,089
INFO 2026-06-08 08:57:52 MarkDuplicates Tracking 445618 as yet unmatched pairs. 52148 records in RAM.
INFO 2026-06-08 08:57:54 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr12:9,070,468
INFO 2026-06-08 08:57:54 MarkDuplicates Tracking 447997 as yet unmatched pairs. 54527 records in RAM.
INFO 2026-06-08 08:57:56 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr12:9,112,471
INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 447604 as yet unmatched pairs. 54134 records in RAM.
INFO 2026-06-08 08:57:57 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr12:11,839,140
INFO 2026-06-08 08:57:57 MarkDuplicates Tracking 441650 as yet unmatched pairs. 48180 records in RAM.
INFO 2026-06-08 08:58:00 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 2s. Last read position: chr12:21,475,504
INFO 2026-06-08 08:58:00 MarkDuplicates Tracking 439921 as yet unmatched pairs. 46448 records in RAM.
INFO 2026-06-08 08:58:01 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr12:32,107,425
INFO 2026-06-08 08:58:01 MarkDuplicates Tracking 438411 as yet unmatched pairs. 44937 records in RAM.
INFO 2026-06-08 08:58:03 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr12:47,743,550
INFO 2026-06-08 08:58:03 MarkDuplicates Tracking 436809 as yet unmatched pairs. 43334 records in RAM.
INFO 2026-06-08 08:58:04 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr12:49,051,834
INFO 2026-06-08 08:58:04 MarkDuplicates Tracking 435614 as yet unmatched pairs. 42139 records in RAM.
INFO 2026-06-08 08:58:06 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr12:49,758,468
INFO 2026-06-08 08:58:06 MarkDuplicates Tracking 436508 as yet unmatched pairs. 43032 records in RAM.
INFO 2026-06-08 08:58:07 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr12:52,151,095
INFO 2026-06-08 08:58:07 MarkDuplicates Tracking 432023 as yet unmatched pairs. 38547 records in RAM.
INFO 2026-06-08 08:58:09 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr12:52,492,852
INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 435230 as yet unmatched pairs. 41754 records in RAM.
INFO 2026-06-08 08:58:11 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr12:52,519,830
INFO 2026-06-08 08:58:11 MarkDuplicates Tracking 445609 as yet unmatched pairs. 52133 records in RAM.
INFO 2026-06-08 08:58:12 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr12:53,060,855
INFO 2026-06-08 08:58:12 MarkDuplicates Tracking 427877 as yet unmatched pairs. 34389 records in RAM.
INFO 2026-06-08 08:58:14 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr12:54,281,903
INFO 2026-06-08 08:58:14 MarkDuplicates Tracking 427989 as yet unmatched pairs. 34488 records in RAM.
INFO 2026-06-08 08:58:15 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr12:56,107,604
INFO 2026-06-08 08:58:15 MarkDuplicates Tracking 424762 as yet unmatched pairs. 31261 records in RAM.
INFO 2026-06-08 08:58:17 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr12:56,643,468
INFO 2026-06-08 08:58:17 MarkDuplicates Tracking 423657 as yet unmatched pairs. 30156 records in RAM.
INFO 2026-06-08 08:58:19 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:57,160,929
INFO 2026-06-08 08:58:19 MarkDuplicates Tracking 422122 as yet unmatched pairs. 28621 records in RAM.
INFO 2026-06-08 08:58:21 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr12:57,269,859
INFO 2026-06-08 08:58:21 MarkDuplicates Tracking 419640 as yet unmatched pairs. 26136 records in RAM.
INFO 2026-06-08 08:58:23 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr12:57,787,045
INFO 2026-06-08 08:58:23 MarkDuplicates Tracking 419063 as yet unmatched pairs. 25559 records in RAM.
INFO 2026-06-08 08:58:25 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr12:64,078,926
INFO 2026-06-08 08:58:25 MarkDuplicates Tracking 416695 as yet unmatched pairs. 23184 records in RAM.
INFO 2026-06-08 08:58:26 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:65,062,544
INFO 2026-06-08 08:58:26 MarkDuplicates Tracking 416401 as yet unmatched pairs. 22890 records in RAM.
INFO 2026-06-08 08:58:28 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr12:66,248,450
INFO 2026-06-08 08:58:28 MarkDuplicates Tracking 416000 as yet unmatched pairs. 22483 records in RAM.
INFO 2026-06-08 08:58:30 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:67,312,662
INFO 2026-06-08 08:58:30 MarkDuplicates Tracking 414434 as yet unmatched pairs. 20917 records in RAM.
INFO 2026-06-08 08:58:31 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr12:69,251,129
INFO 2026-06-08 08:58:31 MarkDuplicates Tracking 411490 as yet unmatched pairs. 17973 records in RAM.
INFO 2026-06-08 08:58:33 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr12:71,138,007
INFO 2026-06-08 08:58:33 MarkDuplicates Tracking 409302 as yet unmatched pairs. 15777 records in RAM.
INFO 2026-06-08 08:58:35 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 2s. Last read position: chr12:91,108,828
INFO 2026-06-08 08:58:35 MarkDuplicates Tracking 410888 as yet unmatched pairs. 17363 records in RAM.
INFO 2026-06-08 08:58:37 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr12:96,323,967
INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 405968 as yet unmatched pairs. 12432 records in RAM.
INFO 2026-06-08 08:58:39 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr12:104,334,268
INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 404715 as yet unmatched pairs. 11179 records in RAM.
INFO 2026-06-08 08:58:40 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr12:109,991,687
INFO 2026-06-08 08:58:40 MarkDuplicates Tracking 403250 as yet unmatched pairs. 9705 records in RAM.
INFO 2026-06-08 08:58:42 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr12:112,406,293
INFO 2026-06-08 08:58:42 MarkDuplicates Tracking 402402 as yet unmatched pairs. 8857 records in RAM.
INFO 2026-06-08 08:58:43 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr12:119,686,816
INFO 2026-06-08 08:58:43 MarkDuplicates Tracking 399680 as yet unmatched pairs. 6130 records in RAM.
INFO 2026-06-08 08:58:45 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr12:121,903,035
INFO 2026-06-08 08:58:45 MarkDuplicates Tracking 398208 as yet unmatched pairs. 4657 records in RAM.
INFO 2026-06-08 08:58:46 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr12:124,343,009
INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 396364 as yet unmatched pairs. 2805 records in RAM.
INFO 2026-06-08 08:58:48 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr12:132,642,276
INFO 2026-06-08 08:58:48 MarkDuplicates Tracking 394282 as yet unmatched pairs. 710 records in RAM.
INFO 2026-06-08 08:58:50 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr13:21,502,958
INFO 2026-06-08 08:58:50 MarkDuplicates Tracking 392769 as yet unmatched pairs. 13725 records in RAM.
INFO 2026-06-08 08:58:51 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr13:32,136,956
INFO 2026-06-08 08:58:51 MarkDuplicates Tracking 391221 as yet unmatched pairs. 12176 records in RAM.
INFO 2026-06-08 08:58:53 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr13:40,958,968
INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 390571 as yet unmatched pairs. 11526 records in RAM.
INFO 2026-06-08 08:58:55 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 2s. Last read position: chr13:46,553,427
INFO 2026-06-08 08:58:55 MarkDuplicates Tracking 388201 as yet unmatched pairs. 9156 records in RAM.
INFO 2026-06-08 08:58:57 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr13:57,634,295
INFO 2026-06-08 08:58:57 MarkDuplicates Tracking 386625 as yet unmatched pairs. 7575 records in RAM.
INFO 2026-06-08 08:58:59 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr13:80,337,238
INFO 2026-06-08 08:58:59 MarkDuplicates Tracking 385219 as yet unmatched pairs. 6168 records in RAM.
INFO 2026-06-08 08:59:00 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr13:102,629,582
INFO 2026-06-08 08:59:00 MarkDuplicates Tracking 383776 as yet unmatched pairs. 4723 records in RAM.
INFO 2026-06-08 08:59:02 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr13:110,428,568
INFO 2026-06-08 08:59:02 MarkDuplicates Tracking 382366 as yet unmatched pairs. 3313 records in RAM.
INFO 2026-06-08 08:59:03 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr13:113,319,598
INFO 2026-06-08 08:59:03 MarkDuplicates Tracking 380374 as yet unmatched pairs. 1321 records in RAM.
INFO 2026-06-08 08:59:05 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr14:21,211,510
INFO 2026-06-08 08:59:05 MarkDuplicates Tracking 378791 as yet unmatched pairs. 34425 records in RAM.
INFO 2026-06-08 08:59:07 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr14:23,062,437
INFO 2026-06-08 08:59:07 MarkDuplicates Tracking 376421 as yet unmatched pairs. 32055 records in RAM.
INFO 2026-06-08 08:59:08 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr14:24,305,964
INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 374973 as yet unmatched pairs. 30607 records in RAM.
INFO 2026-06-08 08:59:10 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr14:35,402,624
INFO 2026-06-08 08:59:10 MarkDuplicates Tracking 375143 as yet unmatched pairs. 30776 records in RAM.
INFO 2026-06-08 08:59:11 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr14:50,665,560
INFO 2026-06-08 08:59:11 MarkDuplicates Tracking 371745 as yet unmatched pairs. 27373 records in RAM.
INFO 2026-06-08 08:59:13 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr14:59,486,724
INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 370353 as yet unmatched pairs. 25981 records in RAM.
INFO 2026-06-08 08:59:15 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr14:65,102,322
INFO 2026-06-08 08:59:15 MarkDuplicates Tracking 368868 as yet unmatched pairs. 24492 records in RAM.
INFO 2026-06-08 08:59:16 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr14:71,057,649
INFO 2026-06-08 08:59:16 MarkDuplicates Tracking 367245 as yet unmatched pairs. 22869 records in RAM.
INFO 2026-06-08 08:59:19 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 2s. Last read position: chr14:74,511,250
INFO 2026-06-08 08:59:19 MarkDuplicates Tracking 366303 as yet unmatched pairs. 21923 records in RAM.
INFO 2026-06-08 08:59:20 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr14:75,985,813
INFO 2026-06-08 08:59:20 MarkDuplicates Tracking 363606 as yet unmatched pairs. 19226 records in RAM.
INFO 2026-06-08 08:59:22 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr14:91,580,831
INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 361727 as yet unmatched pairs. 17343 records in RAM.
INFO 2026-06-08 08:59:24 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr14:96,311,555
INFO 2026-06-08 08:59:24 MarkDuplicates Tracking 360584 as yet unmatched pairs. 16200 records in RAM.
INFO 2026-06-08 08:59:25 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr14:102,044,593
INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 359260 as yet unmatched pairs. 14875 records in RAM.
INFO 2026-06-08 08:59:27 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr14:104,772,349
INFO 2026-06-08 08:59:27 MarkDuplicates Tracking 357255 as yet unmatched pairs. 12867 records in RAM.
INFO 2026-06-08 08:59:28 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr14:105,587,130
INFO 2026-06-08 08:59:28 MarkDuplicates Tracking 355754 as yet unmatched pairs. 11366 records in RAM.
INFO 2026-06-08 08:59:30 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,233
INFO 2026-06-08 08:59:30 MarkDuplicates Tracking 361527 as yet unmatched pairs. 17139 records in RAM.
INFO 2026-06-08 08:59:32 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr14:105,668,414
INFO 2026-06-08 08:59:32 MarkDuplicates Tracking 359061 as yet unmatched pairs. 14673 records in RAM.
INFO 2026-06-08 08:59:33 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,438
INFO 2026-06-08 08:59:33 MarkDuplicates Tracking 374543 as yet unmatched pairs. 30155 records in RAM.
INFO 2026-06-08 08:59:35 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr14:105,708,428
INFO 2026-06-08 08:59:35 MarkDuplicates Tracking 370209 as yet unmatched pairs. 25818 records in RAM.
INFO 2026-06-08 08:59:37 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,608
INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 369806 as yet unmatched pairs. 25415 records in RAM.
INFO 2026-06-08 08:59:38 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,121
INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 360361 as yet unmatched pairs. 15968 records in RAM.
INFO 2026-06-08 08:59:40 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,982
INFO 2026-06-08 08:59:40 MarkDuplicates Tracking 357247 as yet unmatched pairs. 12854 records in RAM.
INFO 2026-06-08 08:59:41 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr14:105,840,641
INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 359471 as yet unmatched pairs. 15078 records in RAM.
INFO 2026-06-08 08:59:42 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr14:105,854,561
INFO 2026-06-08 08:59:42 MarkDuplicates Tracking 347588 as yet unmatched pairs. 3195 records in RAM.
INFO 2026-06-08 08:59:44 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr15:25,714,081
INFO 2026-06-08 08:59:44 MarkDuplicates Tracking 343688 as yet unmatched pairs. 26967 records in RAM.
INFO 2026-06-08 08:59:46 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr15:34,225,171
INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 343170 as yet unmatched pairs. 26449 records in RAM.
INFO 2026-06-08 08:59:47 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr15:40,557,305
INFO 2026-06-08 08:59:47 MarkDuplicates Tracking 341209 as yet unmatched pairs. 24485 records in RAM.
INFO 2026-06-08 08:59:49 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr15:42,278,546
INFO 2026-06-08 08:59:49 MarkDuplicates Tracking 339506 as yet unmatched pairs. 22782 records in RAM.
INFO 2026-06-08 08:59:50 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr15:43,770,271
INFO 2026-06-08 08:59:50 MarkDuplicates Tracking 339764 as yet unmatched pairs. 23040 records in RAM.
INFO 2026-06-08 08:59:52 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr15:45,682,558
INFO 2026-06-08 08:59:52 MarkDuplicates Tracking 336617 as yet unmatched pairs. 19893 records in RAM.
INFO 2026-06-08 08:59:54 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr15:51,798,282
INFO 2026-06-08 08:59:54 MarkDuplicates Tracking 334730 as yet unmatched pairs. 18004 records in RAM.
INFO 2026-06-08 08:59:55 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr15:58,879,925
INFO 2026-06-08 08:59:55 MarkDuplicates Tracking 333411 as yet unmatched pairs. 16685 records in RAM.
INFO 2026-06-08 08:59:56 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr15:63,127,470
INFO 2026-06-08 08:59:56 MarkDuplicates Tracking 331739 as yet unmatched pairs. 15013 records in RAM.
INFO 2026-06-08 08:59:58 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr15:65,593,428
INFO 2026-06-08 08:59:58 MarkDuplicates Tracking 330224 as yet unmatched pairs. 13492 records in RAM.
INFO 2026-06-08 09:00:00 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr15:71,737,771
INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 328627 as yet unmatched pairs. 11879 records in RAM.
INFO 2026-06-08 09:00:01 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr15:74,023,263
INFO 2026-06-08 09:00:01 MarkDuplicates Tracking 328639 as yet unmatched pairs. 11890 records in RAM.
INFO 2026-06-08 09:00:03 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr15:75,412,902
INFO 2026-06-08 09:00:03 MarkDuplicates Tracking 325173 as yet unmatched pairs. 8424 records in RAM.
INFO 2026-06-08 09:00:05 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr15:78,922,147
INFO 2026-06-08 09:00:05 MarkDuplicates Tracking 327295 as yet unmatched pairs. 10543 records in RAM.
INFO 2026-06-08 09:00:06 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr15:84,406,906
INFO 2026-06-08 09:00:06 MarkDuplicates Tracking 321576 as yet unmatched pairs. 4820 records in RAM.
INFO 2026-06-08 09:00:08 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr15:88,899,680
INFO 2026-06-08 09:00:08 MarkDuplicates Tracking 321188 as yet unmatched pairs. 4432 records in RAM.
INFO 2026-06-08 09:00:10 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 2s. Last read position: chr15:90,878,139
INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 318534 as yet unmatched pairs. 1778 records in RAM.
INFO 2026-06-08 09:00:12 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr16:55,861
INFO 2026-06-08 09:00:12 MarkDuplicates Tracking 316889 as yet unmatched pairs. 45655 records in RAM.
INFO 2026-06-08 09:00:14 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr16:766,370
INFO 2026-06-08 09:00:14 MarkDuplicates Tracking 316629 as yet unmatched pairs. 45385 records in RAM.
INFO 2026-06-08 09:00:15 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr16:1,786,561
INFO 2026-06-08 09:00:15 MarkDuplicates Tracking 312908 as yet unmatched pairs. 41664 records in RAM.
INFO 2026-06-08 09:00:17 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr16:2,255,705
INFO 2026-06-08 09:00:17 MarkDuplicates Tracking 311124 as yet unmatched pairs. 39880 records in RAM.
INFO 2026-06-08 09:00:19 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr16:2,771,974
INFO 2026-06-08 09:00:19 MarkDuplicates Tracking 310054 as yet unmatched pairs. 38810 records in RAM.
INFO 2026-06-08 09:00:20 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr16:4,337,257
INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 307684 as yet unmatched pairs. 36440 records in RAM.
INFO 2026-06-08 09:00:22 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr16:10,743,987
INFO 2026-06-08 09:00:22 MarkDuplicates Tracking 305492 as yet unmatched pairs. 34248 records in RAM.
INFO 2026-06-08 09:00:23 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr16:14,841,407
INFO 2026-06-08 09:00:23 MarkDuplicates Tracking 304110 as yet unmatched pairs. 32866 records in RAM.
INFO 2026-06-08 09:00:25 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr16:15,636,053
INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 302977 as yet unmatched pairs. 31733 records in RAM.
INFO 2026-06-08 09:00:26 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr16:16,357,231
INFO 2026-06-08 09:00:26 MarkDuplicates Tracking 302343 as yet unmatched pairs. 31099 records in RAM.
INFO 2026-06-08 09:00:27 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr16:18,426,664
INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 301506 as yet unmatched pairs. 30262 records in RAM.
INFO 2026-06-08 09:00:28 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:20,798,883
INFO 2026-06-08 09:00:28 MarkDuplicates Tracking 299950 as yet unmatched pairs. 28702 records in RAM.
INFO 2026-06-08 09:00:30 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:22,347,555
INFO 2026-06-08 09:00:30 MarkDuplicates Tracking 299011 as yet unmatched pairs. 27763 records in RAM.
INFO 2026-06-08 09:00:31 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:27,469,496
INFO 2026-06-08 09:00:31 MarkDuplicates Tracking 298143 as yet unmatched pairs. 26891 records in RAM.
INFO 2026-06-08 09:00:32 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr16:28,835,645
INFO 2026-06-08 09:00:32 MarkDuplicates Tracking 296751 as yet unmatched pairs. 25499 records in RAM.
INFO 2026-06-08 09:00:34 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:29,836,765
INFO 2026-06-08 09:00:34 MarkDuplicates Tracking 296222 as yet unmatched pairs. 24969 records in RAM.
INFO 2026-06-08 09:00:36 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:30,239,269
INFO 2026-06-08 09:00:36 MarkDuplicates Tracking 294071 as yet unmatched pairs. 22818 records in RAM.
INFO 2026-06-08 09:00:37 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr16:30,942,192
INFO 2026-06-08 09:00:37 MarkDuplicates Tracking 292177 as yet unmatched pairs. 20922 records in RAM.
INFO 2026-06-08 09:00:39 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 2s. Last read position: chr16:46,626,690
INFO 2026-06-08 09:00:39 MarkDuplicates Tracking 290388 as yet unmatched pairs. 19132 records in RAM.
INFO 2026-06-08 09:00:41 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr16:54,283,700
INFO 2026-06-08 09:00:41 MarkDuplicates Tracking 289139 as yet unmatched pairs. 17859 records in RAM.
INFO 2026-06-08 09:00:43 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr16:56,626,928
INFO 2026-06-08 09:00:43 MarkDuplicates Tracking 288219 as yet unmatched pairs. 16938 records in RAM.
INFO 2026-06-08 09:00:45 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:58,520,794
INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 285618 as yet unmatched pairs. 14333 records in RAM.
INFO 2026-06-08 09:00:47 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr16:67,202,995
INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 283481 as yet unmatched pairs. 12196 records in RAM.
INFO 2026-06-08 09:00:48 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr16:68,678,565
INFO 2026-06-08 09:00:48 MarkDuplicates Tracking 282039 as yet unmatched pairs. 10752 records in RAM.
INFO 2026-06-08 09:00:50 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr16:70,519,697
INFO 2026-06-08 09:00:50 MarkDuplicates Tracking 280315 as yet unmatched pairs. 9028 records in RAM.
INFO 2026-06-08 09:00:51 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr16:74,453,282
INFO 2026-06-08 09:00:51 MarkDuplicates Tracking 279093 as yet unmatched pairs. 7806 records in RAM.
INFO 2026-06-08 09:00:53 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr16:84,099,112
INFO 2026-06-08 09:00:53 MarkDuplicates Tracking 277118 as yet unmatched pairs. 5814 records in RAM.
INFO 2026-06-08 09:00:54 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr16:88,434,906
INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 275026 as yet unmatched pairs. 3719 records in RAM.
INFO 2026-06-08 09:00:57 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 2s. Last read position: chr16:89,199,700
INFO 2026-06-08 09:00:57 MarkDuplicates Tracking 273447 as yet unmatched pairs. 2132 records in RAM.
INFO 2026-06-08 09:00:59 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 2s. Last read position: chr17:778,700
INFO 2026-06-08 09:00:59 MarkDuplicates Tracking 271022 as yet unmatched pairs. 97134 records in RAM.
INFO 2026-06-08 09:01:01 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr17:1,656,391
INFO 2026-06-08 09:01:01 MarkDuplicates Tracking 269641 as yet unmatched pairs. 95753 records in RAM.
INFO 2026-06-08 09:01:03 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr17:2,464,277
INFO 2026-06-08 09:01:03 MarkDuplicates Tracking 267498 as yet unmatched pairs. 93610 records in RAM.
INFO 2026-06-08 09:01:04 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr17:4,798,125
INFO 2026-06-08 09:01:04 MarkDuplicates Tracking 266264 as yet unmatched pairs. 92376 records in RAM.
INFO 2026-06-08 09:01:06 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr17:7,012,737
INFO 2026-06-08 09:01:06 MarkDuplicates Tracking 265239 as yet unmatched pairs. 91350 records in RAM.
INFO 2026-06-08 09:01:08 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr17:7,466,235
INFO 2026-06-08 09:01:08 MarkDuplicates Tracking 263130 as yet unmatched pairs. 89241 records in RAM.
INFO 2026-06-08 09:01:09 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr17:7,778,351
INFO 2026-06-08 09:01:09 MarkDuplicates Tracking 260980 as yet unmatched pairs. 87091 records in RAM.
INFO 2026-06-08 09:01:11 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr17:8,379,916
INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 262282 as yet unmatched pairs. 88390 records in RAM.
INFO 2026-06-08 09:01:13 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr17:16,353,032
INFO 2026-06-08 09:01:13 MarkDuplicates Tracking 257618 as yet unmatched pairs. 83726 records in RAM.
INFO 2026-06-08 09:01:14 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr17:17,820,432
INFO 2026-06-08 09:01:14 MarkDuplicates Tracking 256127 as yet unmatched pairs. 82234 records in RAM.
INFO 2026-06-08 09:01:16 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr17:19,783,729
INFO 2026-06-08 09:01:16 MarkDuplicates Tracking 254373 as yet unmatched pairs. 80480 records in RAM.
INFO 2026-06-08 09:01:18 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 2s. Last read position: chr17:28,644,132
INFO 2026-06-08 09:01:18 MarkDuplicates Tracking 253000 as yet unmatched pairs. 79099 records in RAM.
INFO 2026-06-08 09:01:20 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr17:30,274,051
INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 251387 as yet unmatched pairs. 77486 records in RAM.
INFO 2026-06-08 09:01:21 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr17:34,999,835
INFO 2026-06-08 09:01:21 MarkDuplicates Tracking 249903 as yet unmatched pairs. 75990 records in RAM.
INFO 2026-06-08 09:01:23 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr17:37,121,355
INFO 2026-06-08 09:01:23 MarkDuplicates Tracking 248413 as yet unmatched pairs. 74500 records in RAM.
INFO 2026-06-08 09:01:24 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr17:38,850,431
INFO 2026-06-08 09:01:24 MarkDuplicates Tracking 252864 as yet unmatched pairs. 78951 records in RAM.
INFO 2026-06-08 09:01:26 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr17:39,723,409
INFO 2026-06-08 09:01:26 MarkDuplicates Tracking 247187 as yet unmatched pairs. 73253 records in RAM.
INFO 2026-06-08 09:01:28 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr17:40,478,618
INFO 2026-06-08 09:01:28 MarkDuplicates Tracking 243462 as yet unmatched pairs. 69527 records in RAM.
INFO 2026-06-08 09:01:29 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr17:41,583,257
INFO 2026-06-08 09:01:29 MarkDuplicates Tracking 246882 as yet unmatched pairs. 72946 records in RAM.
INFO 2026-06-08 09:01:31 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr17:41,612,395
INFO 2026-06-08 09:01:31 MarkDuplicates Tracking 239700 as yet unmatched pairs. 65764 records in RAM.
INFO 2026-06-08 09:01:32 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr17:42,128,339
INFO 2026-06-08 09:01:32 MarkDuplicates Tracking 238044 as yet unmatched pairs. 64102 records in RAM.
INFO 2026-06-08 09:01:34 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr17:42,853,306
INFO 2026-06-08 09:01:34 MarkDuplicates Tracking 236852 as yet unmatched pairs. 62910 records in RAM.
INFO 2026-06-08 09:03:40 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 125s. Last read position: chr17:44,350,520
INFO 2026-06-08 09:03:40 MarkDuplicates Tracking 237671 as yet unmatched pairs. 63723 records in RAM.
INFO 2026-06-08 09:03:43 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:17:21s. Time for last 1,000,000: 2s. Last read position: chr17:46,039,073
INFO 2026-06-08 09:03:43 MarkDuplicates Tracking 232634 as yet unmatched pairs. 58686 records in RAM.
INFO 2026-06-08 09:03:44 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: chr17:48,057,053
INFO 2026-06-08 09:03:44 MarkDuplicates Tracking 232360 as yet unmatched pairs. 58412 records in RAM.
INFO 2026-06-08 09:03:46 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,477
INFO 2026-06-08 09:03:46 MarkDuplicates Tracking 236953 as yet unmatched pairs. 63005 records in RAM.
INFO 2026-06-08 09:03:48 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,652
INFO 2026-06-08 09:03:48 MarkDuplicates Tracking 237039 as yet unmatched pairs. 63091 records in RAM.
INFO 2026-06-08 09:03:49 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,111
INFO 2026-06-08 09:03:49 MarkDuplicates Tracking 270994 as yet unmatched pairs. 97046 records in RAM.
INFO 2026-06-08 09:03:53 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 3s. Last read position: chr17:50,188,102
INFO 2026-06-08 09:03:53 MarkDuplicates Tracking 283570 as yet unmatched pairs. 109622 records in RAM.
INFO 2026-06-08 09:03:54 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,911
INFO 2026-06-08 09:03:54 MarkDuplicates Tracking 276914 as yet unmatched pairs. 102966 records in RAM.
INFO 2026-06-08 09:03:56 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,446
INFO 2026-06-08 09:03:56 MarkDuplicates Tracking 256171 as yet unmatched pairs. 82223 records in RAM.
INFO 2026-06-08 09:03:58 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,015
INFO 2026-06-08 09:03:58 MarkDuplicates Tracking 263417 as yet unmatched pairs. 89469 records in RAM.
INFO 2026-06-08 09:04:00 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,859
INFO 2026-06-08 09:04:00 MarkDuplicates Tracking 237464 as yet unmatched pairs. 63516 records in RAM.
INFO 2026-06-08 09:04:01 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,870
INFO 2026-06-08 09:04:02 MarkDuplicates Tracking 271244 as yet unmatched pairs. 97296 records in RAM.
INFO 2026-06-08 09:04:03 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,834
INFO 2026-06-08 09:04:03 MarkDuplicates Tracking 268217 as yet unmatched pairs. 94269 records in RAM.
INFO 2026-06-08 09:04:05 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,129
INFO 2026-06-08 09:04:05 MarkDuplicates Tracking 272266 as yet unmatched pairs. 98318 records in RAM.
INFO 2026-06-08 09:04:07 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,610
INFO 2026-06-08 09:04:07 MarkDuplicates Tracking 247997 as yet unmatched pairs. 74049 records in RAM.
INFO 2026-06-08 09:04:08 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,292
INFO 2026-06-08 09:04:08 MarkDuplicates Tracking 258104 as yet unmatched pairs. 84156 records in RAM.
INFO 2026-06-08 09:04:11 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,963
INFO 2026-06-08 09:04:11 MarkDuplicates Tracking 249780 as yet unmatched pairs. 75832 records in RAM.
INFO 2026-06-08 09:04:13 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,517
INFO 2026-06-08 09:04:13 MarkDuplicates Tracking 252029 as yet unmatched pairs. 78081 records in RAM.
INFO 2026-06-08 09:04:15 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,751
INFO 2026-06-08 09:04:15 MarkDuplicates Tracking 256502 as yet unmatched pairs. 82553 records in RAM.
INFO 2026-06-08 09:04:16 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,265
INFO 2026-06-08 09:04:16 MarkDuplicates Tracking 236903 as yet unmatched pairs. 62954 records in RAM.
INFO 2026-06-08 09:04:18 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 1s. Last read position: chr17:50,201,417
INFO 2026-06-08 09:04:18 MarkDuplicates Tracking 213218 as yet unmatched pairs. 39269 records in RAM.
INFO 2026-06-08 09:04:20 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr17:57,258,274
INFO 2026-06-08 09:04:20 MarkDuplicates Tracking 197272 as yet unmatched pairs. 23323 records in RAM.
INFO 2026-06-08 09:04:21 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr17:59,676,985
INFO 2026-06-08 09:04:21 MarkDuplicates Tracking 197114 as yet unmatched pairs. 23165 records in RAM.
INFO 2026-06-08 09:04:23 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 2s. Last read position: chr17:61,982,725
INFO 2026-06-08 09:04:23 MarkDuplicates Tracking 194266 as yet unmatched pairs. 20317 records in RAM.
INFO 2026-06-08 09:04:25 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr17:64,212,759
INFO 2026-06-08 09:04:25 MarkDuplicates Tracking 192411 as yet unmatched pairs. 18462 records in RAM.
INFO 2026-06-08 09:04:27 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr17:67,931,962
INFO 2026-06-08 09:04:27 MarkDuplicates Tracking 191114 as yet unmatched pairs. 17165 records in RAM.
INFO 2026-06-08 09:04:28 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr17:73,422,346
INFO 2026-06-08 09:04:28 MarkDuplicates Tracking 189215 as yet unmatched pairs. 15266 records in RAM.
INFO 2026-06-08 09:04:30 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr17:75,617,838
INFO 2026-06-08 09:04:30 MarkDuplicates Tracking 187331 as yet unmatched pairs. 13382 records in RAM.
INFO 2026-06-08 09:04:32 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr17:76,010,020
INFO 2026-06-08 09:04:32 MarkDuplicates Tracking 185350 as yet unmatched pairs. 11401 records in RAM.
INFO 2026-06-08 09:04:34 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 1s. Last read position: chr17:78,120,675
INFO 2026-06-08 09:04:34 MarkDuplicates Tracking 184033 as yet unmatched pairs. 10084 records in RAM.
INFO 2026-06-08 09:04:35 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr17:80,108,566
INFO 2026-06-08 09:04:35 MarkDuplicates Tracking 181730 as yet unmatched pairs. 7781 records in RAM.
INFO 2026-06-08 09:04:37 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr17:81,103,560
INFO 2026-06-08 09:04:37 MarkDuplicates Tracking 179876 as yet unmatched pairs. 5927 records in RAM.
INFO 2026-06-08 09:04:39 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr17:81,845,569
INFO 2026-06-08 09:04:39 MarkDuplicates Tracking 179883 as yet unmatched pairs. 5934 records in RAM.
INFO 2026-06-08 09:04:40 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr17:82,088,268
INFO 2026-06-08 09:04:40 MarkDuplicates Tracking 176032 as yet unmatched pairs. 2083 records in RAM.
INFO 2026-06-08 09:04:42 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr18:2,688,440
INFO 2026-06-08 09:04:42 MarkDuplicates Tracking 174023 as yet unmatched pairs. 9889 records in RAM.
INFO 2026-06-08 09:04:43 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr18:10,705,566
INFO 2026-06-08 09:04:43 MarkDuplicates Tracking 172164 as yet unmatched pairs. 8024 records in RAM.
INFO 2026-06-08 09:04:45 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr18:23,907,654
INFO 2026-06-08 09:04:45 MarkDuplicates Tracking 170736 as yet unmatched pairs. 6592 records in RAM.
INFO 2026-06-08 09:04:46 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr18:32,413,040
INFO 2026-06-08 09:04:46 MarkDuplicates Tracking 169254 as yet unmatched pairs. 5102 records in RAM.
INFO 2026-06-08 09:04:48 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr18:49,783,870
INFO 2026-06-08 09:04:48 MarkDuplicates Tracking 167807 as yet unmatched pairs. 3652 records in RAM.
INFO 2026-06-08 09:04:50 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr18:62,228,303
INFO 2026-06-08 09:04:50 MarkDuplicates Tracking 166424 as yet unmatched pairs. 2268 records in RAM.
INFO 2026-06-08 09:04:51 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr18:80,137,142
INFO 2026-06-08 09:04:51 MarkDuplicates Tracking 164525 as yet unmatched pairs. 369 records in RAM.
INFO 2026-06-08 09:04:54 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 2s. Last read position: chr19:1,036,421
INFO 2026-06-08 09:04:54 MarkDuplicates Tracking 162736 as yet unmatched pairs. 70059 records in RAM.
INFO 2026-06-08 09:04:55 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr19:1,432,551
INFO 2026-06-08 09:04:55 MarkDuplicates Tracking 160119 as yet unmatched pairs. 67436 records in RAM.
INFO 2026-06-08 09:04:57 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr19:2,246,893
INFO 2026-06-08 09:04:57 MarkDuplicates Tracking 157937 as yet unmatched pairs. 65254 records in RAM.
INFO 2026-06-08 09:04:59 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr19:3,624,128
INFO 2026-06-08 09:04:59 MarkDuplicates Tracking 155522 as yet unmatched pairs. 62839 records in RAM.
INFO 2026-06-08 09:05:01 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 2s. Last read position: chr19:4,941,769
INFO 2026-06-08 09:05:01 MarkDuplicates Tracking 153620 as yet unmatched pairs. 60936 records in RAM.
INFO 2026-06-08 09:05:03 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 2s. Last read position: chr19:6,422,340
INFO 2026-06-08 09:05:03 MarkDuplicates Tracking 152532 as yet unmatched pairs. 59848 records in RAM.
INFO 2026-06-08 09:05:05 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr19:6,719,241
INFO 2026-06-08 09:05:05 MarkDuplicates Tracking 151155 as yet unmatched pairs. 58471 records in RAM.
INFO 2026-06-08 09:05:06 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr19:8,302,882
INFO 2026-06-08 09:05:06 MarkDuplicates Tracking 148390 as yet unmatched pairs. 55706 records in RAM.
INFO 2026-06-08 09:05:08 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr19:9,992,023
INFO 2026-06-08 09:05:08 MarkDuplicates Tracking 147198 as yet unmatched pairs. 54514 records in RAM.
INFO 2026-06-08 09:05:10 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr19:10,682,553
INFO 2026-06-08 09:05:10 MarkDuplicates Tracking 144853 as yet unmatched pairs. 52169 records in RAM.
INFO 2026-06-08 09:05:11 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr19:11,449,295
INFO 2026-06-08 09:05:11 MarkDuplicates Tracking 143190 as yet unmatched pairs. 50506 records in RAM.
INFO 2026-06-08 09:05:13 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr19:12,928,405
INFO 2026-06-08 09:05:13 MarkDuplicates Tracking 140843 as yet unmatched pairs. 48159 records in RAM.
INFO 2026-06-08 09:05:14 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr19:14,157,001
INFO 2026-06-08 09:05:14 MarkDuplicates Tracking 138704 as yet unmatched pairs. 46020 records in RAM.
INFO 2026-06-08 09:05:17 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 2s. Last read position: chr19:15,185,487
INFO 2026-06-08 09:05:17 MarkDuplicates Tracking 137286 as yet unmatched pairs. 44602 records in RAM.
INFO 2026-06-08 09:05:19 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 2s. Last read position: chr19:16,519,288
INFO 2026-06-08 09:05:19 MarkDuplicates Tracking 134867 as yet unmatched pairs. 42183 records in RAM.
INFO 2026-06-08 09:05:20 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr19:17,826,761
INFO 2026-06-08 09:05:20 MarkDuplicates Tracking 133153 as yet unmatched pairs. 40469 records in RAM.
INFO 2026-06-08 09:05:22 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr19:18,465,466
INFO 2026-06-08 09:05:22 MarkDuplicates Tracking 130731 as yet unmatched pairs. 38047 records in RAM.
INFO 2026-06-08 09:05:23 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr19:19,640,461
INFO 2026-06-08 09:05:23 MarkDuplicates Tracking 128682 as yet unmatched pairs. 35995 records in RAM.
INFO 2026-06-08 09:05:25 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr19:34,684,709
INFO 2026-06-08 09:05:25 MarkDuplicates Tracking 126920 as yet unmatched pairs. 34232 records in RAM.
INFO 2026-06-08 09:05:26 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr19:35,759,319
INFO 2026-06-08 09:05:26 MarkDuplicates Tracking 124797 as yet unmatched pairs. 32109 records in RAM.
INFO 2026-06-08 09:05:28 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr19:38,619,222
INFO 2026-06-08 09:05:28 MarkDuplicates Tracking 124194 as yet unmatched pairs. 31506 records in RAM.
INFO 2026-06-08 09:05:29 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr19:39,407,955
INFO 2026-06-08 09:05:29 MarkDuplicates Tracking 122794 as yet unmatched pairs. 30106 records in RAM.
INFO 2026-06-08 09:05:31 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr19:39,893,039
INFO 2026-06-08 09:05:31 MarkDuplicates Tracking 121263 as yet unmatched pairs. 28575 records in RAM.
INFO 2026-06-08 09:05:32 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr19:40,591,023
INFO 2026-06-08 09:05:32 MarkDuplicates Tracking 118745 as yet unmatched pairs. 26057 records in RAM.
INFO 2026-06-08 09:05:34 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr19:41,710,034
INFO 2026-06-08 09:05:34 MarkDuplicates Tracking 116322 as yet unmatched pairs. 23634 records in RAM.
INFO 2026-06-08 09:05:35 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr19:42,273,176
INFO 2026-06-08 09:05:35 MarkDuplicates Tracking 114594 as yet unmatched pairs. 21906 records in RAM.
INFO 2026-06-08 09:05:37 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr19:44,108,158
INFO 2026-06-08 09:05:37 MarkDuplicates Tracking 112773 as yet unmatched pairs. 20071 records in RAM.
INFO 2026-06-08 09:05:38 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr19:45,145,489
INFO 2026-06-08 09:05:38 MarkDuplicates Tracking 110610 as yet unmatched pairs. 17908 records in RAM.
INFO 2026-06-08 09:05:40 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr19:46,608,198
INFO 2026-06-08 09:05:40 MarkDuplicates Tracking 109661 as yet unmatched pairs. 16959 records in RAM.
INFO 2026-06-08 09:05:42 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 2s. Last read position: chr19:47,756,549
INFO 2026-06-08 09:05:42 MarkDuplicates Tracking 106752 as yet unmatched pairs. 14050 records in RAM.
INFO 2026-06-08 09:05:44 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr19:49,010,591
INFO 2026-06-08 09:05:44 MarkDuplicates Tracking 104864 as yet unmatched pairs. 12161 records in RAM.
INFO 2026-06-08 09:05:46 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr19:49,595,623
INFO 2026-06-08 09:05:46 MarkDuplicates Tracking 102710 as yet unmatched pairs. 10007 records in RAM.
INFO 2026-06-08 09:05:47 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr19:50,231,979
INFO 2026-06-08 09:05:47 MarkDuplicates Tracking 101324 as yet unmatched pairs. 8621 records in RAM.
INFO 2026-06-08 09:05:48 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr19:52,211,264
INFO 2026-06-08 09:05:48 MarkDuplicates Tracking 99091 as yet unmatched pairs. 6388 records in RAM.
INFO 2026-06-08 09:05:50 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr19:54,454,519
INFO 2026-06-08 09:05:50 MarkDuplicates Tracking 97964 as yet unmatched pairs. 5261 records in RAM.
INFO 2026-06-08 09:05:52 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr19:55,659,334
INFO 2026-06-08 09:05:52 MarkDuplicates Tracking 95734 as yet unmatched pairs. 3025 records in RAM.
INFO 2026-06-08 09:05:53 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr19:58,367,741
INFO 2026-06-08 09:05:53 MarkDuplicates Tracking 93621 as yet unmatched pairs. 912 records in RAM.
INFO 2026-06-08 09:05:56 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 2s. Last read position: chr20:2,117,002
INFO 2026-06-08 09:05:56 MarkDuplicates Tracking 91770 as yet unmatched pairs. 24287 records in RAM.
INFO 2026-06-08 09:05:57 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr20:4,699,829
INFO 2026-06-08 09:05:57 MarkDuplicates Tracking 90118 as yet unmatched pairs. 22635 records in RAM.
INFO 2026-06-08 09:05:59 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr20:17,659,114
INFO 2026-06-08 09:05:59 MarkDuplicates Tracking 88189 as yet unmatched pairs. 20706 records in RAM.
INFO 2026-06-08 09:06:01 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr20:23,633,929
INFO 2026-06-08 09:06:01 MarkDuplicates Tracking 89555 as yet unmatched pairs. 22072 records in RAM.
INFO 2026-06-08 09:06:03 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr20:33,238,192
INFO 2026-06-08 09:06:03 MarkDuplicates Tracking 86160 as yet unmatched pairs. 18677 records in RAM.
INFO 2026-06-08 09:06:04 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr20:35,016,085
INFO 2026-06-08 09:06:04 MarkDuplicates Tracking 83735 as yet unmatched pairs. 16252 records in RAM.
INFO 2026-06-08 09:06:06 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr20:36,815,547
INFO 2026-06-08 09:06:06 MarkDuplicates Tracking 81928 as yet unmatched pairs. 14437 records in RAM.
INFO 2026-06-08 09:06:07 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr20:38,562,604
INFO 2026-06-08 09:06:07 MarkDuplicates Tracking 80266 as yet unmatched pairs. 12775 records in RAM.
INFO 2026-06-08 09:06:09 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr20:45,253,073
INFO 2026-06-08 09:06:09 MarkDuplicates Tracking 80382 as yet unmatched pairs. 12891 records in RAM.
INFO 2026-06-08 09:06:11 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr20:46,013,354
INFO 2026-06-08 09:06:11 MarkDuplicates Tracking 77154 as yet unmatched pairs. 9663 records in RAM.
INFO 2026-06-08 09:06:12 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr20:50,191,158
INFO 2026-06-08 09:06:12 MarkDuplicates Tracking 75570 as yet unmatched pairs. 8079 records in RAM.
INFO 2026-06-08 09:06:13 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr20:58,714,006
INFO 2026-06-08 09:06:13 MarkDuplicates Tracking 73543 as yet unmatched pairs. 6052 records in RAM.
INFO 2026-06-08 09:06:15 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr20:62,314,345
INFO 2026-06-08 09:06:15 MarkDuplicates Tracking 71939 as yet unmatched pairs. 4447 records in RAM.
INFO 2026-06-08 09:06:17 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr20:63,203,068
INFO 2026-06-08 09:06:17 MarkDuplicates Tracking 69506 as yet unmatched pairs. 2013 records in RAM.
INFO 2026-06-08 09:06:19 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr21:5,036,570
INFO 2026-06-08 09:06:19 MarkDuplicates Tracking 67510 as yet unmatched pairs. 14394 records in RAM.
INFO 2026-06-08 09:06:20 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr21:8,440,760
INFO 2026-06-08 09:06:20 MarkDuplicates Tracking 66660 as yet unmatched pairs. 13542 records in RAM.
INFO 2026-06-08 09:06:21 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr21:26,089,940
INFO 2026-06-08 09:06:21 MarkDuplicates Tracking 66887 as yet unmatched pairs. 13769 records in RAM.
INFO 2026-06-08 09:06:23 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr21:33,551,140
INFO 2026-06-08 09:06:23 MarkDuplicates Tracking 64282 as yet unmatched pairs. 11164 records in RAM.
INFO 2026-06-08 09:06:24 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr21:37,480,715
INFO 2026-06-08 09:06:24 MarkDuplicates Tracking 61813 as yet unmatched pairs. 8695 records in RAM.
INFO 2026-06-08 09:06:26 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr21:43,418,481
INFO 2026-06-08 09:06:26 MarkDuplicates Tracking 59946 as yet unmatched pairs. 6828 records in RAM.
INFO 2026-06-08 09:06:27 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr21:44,967,165
INFO 2026-06-08 09:06:27 MarkDuplicates Tracking 58102 as yet unmatched pairs. 4984 records in RAM.
INFO 2026-06-08 09:06:29 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 2s. Last read position: chr21:45,997,737
INFO 2026-06-08 09:06:29 MarkDuplicates Tracking 56455 as yet unmatched pairs. 3331 records in RAM.
INFO 2026-06-08 09:06:31 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr21:46,132,288
INFO 2026-06-08 09:06:31 MarkDuplicates Tracking 55604 as yet unmatched pairs. 2478 records in RAM.
INFO 2026-06-08 09:06:33 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 2s. Last read position: chr22:19,435,895
INFO 2026-06-08 09:06:33 MarkDuplicates Tracking 52251 as yet unmatched pairs. 25234 records in RAM.
INFO 2026-06-08 09:06:35 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 2s. Last read position: chr22:21,688,798
INFO 2026-06-08 09:06:35 MarkDuplicates Tracking 50477 as yet unmatched pairs. 23460 records in RAM.
INFO 2026-06-08 09:06:37 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr22:23,780,376
INFO 2026-06-08 09:06:37 MarkDuplicates Tracking 49516 as yet unmatched pairs. 22499 records in RAM.
INFO 2026-06-08 09:06:38 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr22:26,464,429
INFO 2026-06-08 09:06:38 MarkDuplicates Tracking 47108 as yet unmatched pairs. 20091 records in RAM.
INFO 2026-06-08 09:06:40 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr22:29,299,765
INFO 2026-06-08 09:06:40 MarkDuplicates Tracking 45606 as yet unmatched pairs. 18589 records in RAM.
INFO 2026-06-08 09:06:41 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr22:31,450,319
INFO 2026-06-08 09:06:41 MarkDuplicates Tracking 43581 as yet unmatched pairs. 16564 records in RAM.
INFO 2026-06-08 09:06:43 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr22:36,288,762
INFO 2026-06-08 09:06:43 MarkDuplicates Tracking 43320 as yet unmatched pairs. 16303 records in RAM.
INFO 2026-06-08 09:06:45 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr22:37,132,386
INFO 2026-06-08 09:06:45 MarkDuplicates Tracking 40022 as yet unmatched pairs. 13005 records in RAM.
INFO 2026-06-08 09:06:46 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr22:38,495,854
INFO 2026-06-08 09:06:46 MarkDuplicates Tracking 39777 as yet unmatched pairs. 12760 records in RAM.
INFO 2026-06-08 09:06:48 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chr22:40,419,004
INFO 2026-06-08 09:06:48 MarkDuplicates Tracking 36565 as yet unmatched pairs. 9548 records in RAM.
INFO 2026-06-08 09:06:49 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr22:42,067,195
INFO 2026-06-08 09:06:49 MarkDuplicates Tracking 35054 as yet unmatched pairs. 8037 records in RAM.
INFO 2026-06-08 09:06:51 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr22:45,548,640
INFO 2026-06-08 09:06:51 MarkDuplicates Tracking 34208 as yet unmatched pairs. 7191 records in RAM.
INFO 2026-06-08 09:06:53 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr22:50,226,055
INFO 2026-06-08 09:06:53 MarkDuplicates Tracking 30852 as yet unmatched pairs. 3835 records in RAM.
INFO 2026-06-08 09:06:54 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr22:50,508,279
INFO 2026-06-08 09:06:54 MarkDuplicates Tracking 28654 as yet unmatched pairs. 1637 records in RAM.
INFO 2026-06-08 09:06:56 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chrX:2,907,290
INFO 2026-06-08 09:06:56 MarkDuplicates Tracking 26603 as yet unmatched pairs. 24218 records in RAM.
INFO 2026-06-08 09:06:58 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chrX:13,627,020
INFO 2026-06-08 09:06:58 MarkDuplicates Tracking 24970 as yet unmatched pairs. 22585 records in RAM.
INFO 2026-06-08 09:07:01 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 2s. Last read position: chrX:24,073,254
INFO 2026-06-08 09:07:01 MarkDuplicates Tracking 24033 as yet unmatched pairs. 21648 records in RAM.
INFO 2026-06-08 09:07:02 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chrX:41,346,337
INFO 2026-06-08 09:07:02 MarkDuplicates Tracking 22266 as yet unmatched pairs. 19881 records in RAM.
INFO 2026-06-08 09:07:04 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chrX:47,583,510
INFO 2026-06-08 09:07:04 MarkDuplicates Tracking 21627 as yet unmatched pairs. 19242 records in RAM.
INFO 2026-06-08 09:07:05 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chrX:49,174,341
INFO 2026-06-08 09:07:05 MarkDuplicates Tracking 18780 as yet unmatched pairs. 16395 records in RAM.
INFO 2026-06-08 09:07:07 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chrX:53,562,145
INFO 2026-06-08 09:07:07 MarkDuplicates Tracking 16784 as yet unmatched pairs. 14399 records in RAM.
INFO 2026-06-08 09:07:08 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chrX:65,739,806
INFO 2026-06-08 09:07:08 MarkDuplicates Tracking 15837 as yet unmatched pairs. 13452 records in RAM.
INFO 2026-06-08 09:07:10 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chrX:72,272,715
INFO 2026-06-08 09:07:10 MarkDuplicates Tracking 16342 as yet unmatched pairs. 13957 records in RAM.
INFO 2026-06-08 09:07:12 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chrX:93,672,718
INFO 2026-06-08 09:07:12 MarkDuplicates Tracking 12222 as yet unmatched pairs. 9837 records in RAM.
INFO 2026-06-08 09:07:13 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chrX:109,665,419
INFO 2026-06-08 09:07:13 MarkDuplicates Tracking 11325 as yet unmatched pairs. 8940 records in RAM.
INFO 2026-06-08 09:07:15 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chrX:123,696,071
INFO 2026-06-08 09:07:15 MarkDuplicates Tracking 9546 as yet unmatched pairs. 7161 records in RAM.
INFO 2026-06-08 09:07:16 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chrX:149,496,394
INFO 2026-06-08 09:07:16 MarkDuplicates Tracking 8478 as yet unmatched pairs. 6093 records in RAM.
INFO 2026-06-08 09:07:18 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chrX:153,954,196
INFO 2026-06-08 09:07:18 MarkDuplicates Tracking 6403 as yet unmatched pairs. 4018 records in RAM.
INFO 2026-06-08 09:07:20 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chrX:154,362,036
INFO 2026-06-08 09:07:20 MarkDuplicates Tracking 5714 as yet unmatched pairs. 3329 records in RAM.
INFO 2026-06-08 09:07:22 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 2s. Last read position: chrX:154,886,869
INFO 2026-06-08 09:07:22 MarkDuplicates Tracking 2917 as yet unmatched pairs. 532 records in RAM.
INFO 2026-06-08 09:07:23 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: KI270733.1:130,676
INFO 2026-06-08 09:07:23 MarkDuplicates Tracking 1373 as yet unmatched pairs. 1334 records in RAM.
INFO 2026-06-08 09:07:25 MarkDuplicates Read 625611483 records. 0 pairs never matched.
INFO 2026-06-08 09:08:09 MarkDuplicates After buildSortedReadEndLists freeMemory: 204142312; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:08:09 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:08:12 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:08:13 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:08:39 OpticalDuplicateFinder Large duplicate set. size = 1043
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,447
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder Large duplicate set. size = 1123
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,386
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder Large duplicate set. size = 1406
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,840
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder Large duplicate set. size = 1237
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,341
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder Large duplicate set. size = 1101
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,217
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder Large duplicate set. size = 1024
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,019
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder Large duplicate set. size = 1021
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,689
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder Large duplicate set. size = 1067
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,505
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder Large duplicate set. size = 1900
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,353
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder Large duplicate set. size = 1001
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,887
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder Large duplicate set. size = 1052
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,448
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder Large duplicate set. size = 1463
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,407
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder Large duplicate set. size = 1160
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,146
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder Large duplicate set. size = 1027
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,411
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder Large duplicate set. size = 2167
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,416
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,392
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder Large duplicate set. size = 3527
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,997
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,331
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,815
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder Large duplicate set. size = 1141
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,195
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder Large duplicate set. size = 1451
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,190
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder Large duplicate set. size = 1556
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,124
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder Large duplicate set. size = 1490
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,952
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder Large duplicate set. size = 1056
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,399
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder Large duplicate set. size = 1615
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,787
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder Large duplicate set. size = 1235
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,007
INFO 2026-06-08 09:08:41 OpticalDuplicateFinder Large duplicate set. size = 1112
INFO 2026-06-08 09:08:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,505
INFO 2026-06-08 09:08:41 OpticalDuplicateFinder Large duplicate set. size = 1571
INFO 2026-06-08 09:08:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,435
INFO 2026-06-08 09:08:41 OpticalDuplicateFinder Large duplicate set. size = 1055
INFO 2026-06-08 09:08:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,873
INFO 2026-06-08 09:08:41 OpticalDuplicateFinder Large duplicate set. size = 1055
INFO 2026-06-08 09:08:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,318
INFO 2026-06-08 09:08:41 OpticalDuplicateFinder Large duplicate set. size = 1281
INFO 2026-06-08 09:08:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,245
INFO 2026-06-08 09:08:41 OpticalDuplicateFinder Large duplicate set. size = 1389
INFO 2026-06-08 09:08:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,887
INFO 2026-06-08 09:08:41 OpticalDuplicateFinder Large duplicate set. size = 1194
INFO 2026-06-08 09:08:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,307
INFO 2026-06-08 09:08:41 OpticalDuplicateFinder Large duplicate set. size = 1484
INFO 2026-06-08 09:08:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,239
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1078
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,484
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1129
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,046
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1019
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,371
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1492
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,856
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder Large duplicate set. size = 1301
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,718
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder Large duplicate set. size = 1051
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,198
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder Large duplicate set. size = 1049
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,859
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder Large duplicate set. size = 1012
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,395
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1165
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,019
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1074
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,589
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1096
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,781
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1333
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,047
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1185
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,689
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1492
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,714
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1163
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,130
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1097
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,897
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder Large duplicate set. size = 1078
INFO 2026-06-08 09:09:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,798
INFO 2026-06-08 09:09:51 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:09:52 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:10:44 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:10:54 MarkDuplicates After generateDuplicateIndexes freeMemory: 203937528; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:10:54 MarkDuplicates Marking 450122064 records as duplicates.
INFO 2026-06-08 09:10:54 MarkDuplicates Found 15757668 optical duplicate clusters.
INFO 2026-06-08 09:10:54 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:11:10 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:22,660,930
INFO 2026-06-08 09:11:26 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:32s. Time for last 10,000,000: 15s. Last read position: chr1:46,799,229
INFO 2026-06-08 09:11:42 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:48s. Time for last 10,000,000: 15s. Last read position: chr1:145,856,650
INFO 2026-06-08 09:11:58 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:03s. Time for last 10,000,000: 15s. Last read position: chr1:156,939,707
INFO 2026-06-08 09:12:13 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:19s. Time for last 10,000,000: 15s. Last read position: chr1:207,022,206
INFO 2026-06-08 09:12:29 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:35s. Time for last 10,000,000: 15s. Last read position: chr2:27,375,665
INFO 2026-06-08 09:12:46 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:51s. Time for last 10,000,000: 16s. Last read position: chr2:65,088,423
INFO 2026-06-08 09:13:02 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:07s. Time for last 10,000,000: 16s. Last read position: chr2:119,436,886
INFO 2026-06-08 09:13:18 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:23s. Time for last 10,000,000: 16s. Last read position: chr2:190,976,885
INFO 2026-06-08 09:13:34 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:39s. Time for last 10,000,000: 15s. Last read position: chr2:216,499,979
INFO 2026-06-08 09:13:50 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:55s. Time for last 10,000,000: 16s. Last read position: chr3:16,175,424
INFO 2026-06-08 09:14:07 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:12s. Time for last 10,000,000: 16s. Last read position: chr3:53,119,932
INFO 2026-06-08 09:14:23 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:29s. Time for last 10,000,000: 16s. Last read position: chr3:149,542,471
INFO 2026-06-08 09:14:39 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:45s. Time for last 10,000,000: 16s. Last read position: chr4:5,466,736
INFO 2026-06-08 09:14:55 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:01s. Time for last 10,000,000: 16s. Last read position: chr4:87,981,756
INFO 2026-06-08 09:15:12 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:17s. Time for last 10,000,000: 16s. Last read position: chr5:35,871,100
INFO 2026-06-08 09:15:28 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:34s. Time for last 10,000,000: 16s. Last read position: chr5:135,370,077
INFO 2026-06-08 09:15:44 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:50s. Time for last 10,000,000: 16s. Last read position: chr5:150,406,304
INFO 2026-06-08 09:16:00 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:06s. Time for last 10,000,000: 15s. Last read position: chr6:632,940
INFO 2026-06-08 09:16:16 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:22s. Time for last 10,000,000: 15s. Last read position: chr6:32,049,318
INFO 2026-06-08 09:16:32 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:38s. Time for last 10,000,000: 15s. Last read position: chr6:63,211,763
INFO 2026-06-08 09:16:48 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:54s. Time for last 10,000,000: 16s. Last read position: chr6:158,766,885
INFO 2026-06-08 09:17:05 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:10s. Time for last 10,000,000: 16s. Last read position: chr7:28,957,638
INFO 2026-06-08 09:17:21 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:26s. Time for last 10,000,000: 16s. Last read position: chr7:76,302,932
INFO 2026-06-08 09:17:37 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:43s. Time for last 10,000,000: 16s. Last read position: chr7:105,106,580
INFO 2026-06-08 09:17:53 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:59s. Time for last 10,000,000: 16s. Last read position: chr8:22,606,607
INFO 2026-06-08 09:18:10 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:15s. Time for last 10,000,000: 16s. Last read position: chr8:120,279,967
INFO 2026-06-08 09:18:25 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:31s. Time for last 10,000,000: 15s. Last read position: chr9:33,294,778
INFO 2026-06-08 09:18:42 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:47s. Time for last 10,000,000: 16s. Last read position: chr9:124,353,630
INFO 2026-06-08 09:18:58 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:03s. Time for last 10,000,000: 15s. Last read position: chr10:11,314,249
INFO 2026-06-08 09:19:14 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:20s. Time for last 10,000,000: 16s. Last read position: chr10:88,941,814
INFO 2026-06-08 09:19:30 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:35s. Time for last 10,000,000: 15s. Last read position: chr11:1,242,108
INFO 2026-06-08 09:19:46 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:51s. Time for last 10,000,000: 15s. Last read position: chr11:46,818,420
INFO 2026-06-08 09:20:01 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:07s. Time for last 10,000,000: 15s. Last read position: chr11:65,613,313
INFO 2026-06-08 09:20:18 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:24s. Time for last 10,000,000: 16s. Last read position: chr11:112,088,867
INFO 2026-06-08 09:20:34 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:40s. Time for last 10,000,000: 16s. Last read position: chr12:9,070,468
INFO 2026-06-08 09:20:50 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:56s. Time for last 10,000,000: 15s. Last read position: chr12:52,519,830
INFO 2026-06-08 09:21:06 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:12s. Time for last 10,000,000: 16s. Last read position: chr12:66,248,450
INFO 2026-06-08 09:21:22 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:28s. Time for last 10,000,000: 16s. Last read position: chr12:121,903,035
INFO 2026-06-08 09:21:38 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:44s. Time for last 10,000,000: 16s. Last read position: chr13:110,428,568
INFO 2026-06-08 09:21:56 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:02s. Time for last 10,000,000: 17s. Last read position: chr14:74,511,250
INFO 2026-06-08 09:22:12 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:17s. Time for last 10,000,000: 15s. Last read position: chr14:105,708,428
INFO 2026-06-08 09:22:28 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:33s. Time for last 10,000,000: 15s. Last read position: chr15:43,770,271
INFO 2026-06-08 09:22:44 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:50s. Time for last 10,000,000: 16s. Last read position: chr15:84,406,906
INFO 2026-06-08 09:23:00 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:06s. Time for last 10,000,000: 16s. Last read position: chr16:14,841,407
INFO 2026-06-08 09:23:16 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:22s. Time for last 10,000,000: 16s. Last read position: chr16:30,942,192
INFO 2026-06-08 09:23:33 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:38s. Time for last 10,000,000: 16s. Last read position: chr16:88,434,906
INFO 2026-06-08 09:23:49 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:54s. Time for last 10,000,000: 16s. Last read position: chr17:16,353,032
INFO 2026-06-08 09:24:05 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:11s. Time for last 10,000,000: 16s. Last read position: chr17:41,583,257
INFO 2026-06-08 09:24:21 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:27s. Time for last 10,000,000: 16s. Last read position: chr17:50,188,102
INFO 2026-06-08 09:24:37 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:43s. Time for last 10,000,000: 16s. Last read position: chr17:50,195,963
INFO 2026-06-08 09:24:53 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:59s. Time for last 10,000,000: 16s. Last read position: chr17:73,422,346
INFO 2026-06-08 09:25:11 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:16s. Time for last 10,000,000: 17s. Last read position: chr18:23,907,654
INFO 2026-06-08 09:25:27 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:32s. Time for last 10,000,000: 15s. Last read position: chr19:6,422,340
INFO 2026-06-08 09:25:42 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:48s. Time for last 10,000,000: 15s. Last read position: chr19:17,826,761
INFO 2026-06-08 09:25:58 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:04s. Time for last 10,000,000: 15s. Last read position: chr19:42,273,176
INFO 2026-06-08 09:26:14 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:19s. Time for last 10,000,000: 15s. Last read position: chr19:55,659,334
INFO 2026-06-08 09:26:30 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:36s. Time for last 10,000,000: 16s. Last read position: chr20:45,253,073
INFO 2026-06-08 09:26:46 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:52s. Time for last 10,000,000: 15s. Last read position: chr21:37,480,715
INFO 2026-06-08 09:27:02 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:07s. Time for last 10,000,000: 15s. Last read position: chr22:31,450,319
INFO 2026-06-08 09:27:17 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:23s. Time for last 10,000,000: 15s. Last read position: chrX:13,627,020
INFO 2026-06-08 09:27:33 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:16:39s. Time for last 10,000,000: 15s. Last read position: chrX:123,696,071
INFO 2026-06-08 09:27:50 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:27:50 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:27:50 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:27:50 MarkDuplicates Before output close freeMemory: 203879376; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:27:50 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:27:50 MarkDuplicates After output close freeMemory: 104134144; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:27:50 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 41.52 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory