Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/80660f98e0eb402bd0bfaf242a5a73/659_buD-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/b02a7396bf6caf366aae276126d7b9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/fad8e114c76cbec4e095b3f5e85ae4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/fad8e114c76cbec4e095b3f5e85ae4/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/197b5f057a677ec6dbf9ec3464f10d/659_buD-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_buD-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (12603155) splicing reads. 252826 splicing junctions. 183696 known splicing junctions. 69130 novel splicing junctions.
sampling 10% (25206311) splicing reads. 304172 splicing junctions. 195472 known splicing junctions. 108700 novel splicing junctions.
sampling 15% (37809467) splicing reads. 337884 splicing junctions. 201550 known splicing junctions. 136334 novel splicing junctions.
sampling 20% (50412622) splicing reads. 362469 splicing junctions. 205351 known splicing junctions. 157118 novel splicing junctions.
sampling 25% (63015778) splicing reads. 381565 splicing junctions. 207998 known splicing junctions. 173567 novel splicing junctions.
sampling 30% (75618934) splicing reads. 396522 splicing junctions. 209920 known splicing junctions. 186602 novel splicing junctions.
sampling 35% (88222089) splicing reads. 408948 splicing junctions. 211411 known splicing junctions. 197537 novel splicing junctions.
sampling 40% (100825245) splicing reads. 419096 splicing junctions. 212559 known splicing junctions. 206537 novel splicing junctions.
sampling 45% (113428401) splicing reads. 427640 splicing junctions. 213518 known splicing junctions. 214122 novel splicing junctions.
sampling 50% (126031557) splicing reads. 434934 splicing junctions. 214307 known splicing junctions. 220627 novel splicing junctions.
sampling 55% (138634712) splicing reads. 441007 splicing junctions. 215001 known splicing junctions. 226006 novel splicing junctions.
sampling 60% (151237868) splicing reads. 446303 splicing junctions. 215554 known splicing junctions. 230749 novel splicing junctions.
sampling 65% (163841024) splicing reads. 450818 splicing junctions. 215990 known splicing junctions. 234828 novel splicing junctions.
sampling 70% (176444179) splicing reads. 454576 splicing junctions. 216359 known splicing junctions. 238217 novel splicing junctions.
sampling 75% (189047335) splicing reads. 457833 splicing junctions. 216701 known splicing junctions. 241132 novel splicing junctions.
sampling 80% (201650491) splicing reads. 460548 splicing junctions. 216963 known splicing junctions. 243585 novel splicing junctions.
sampling 85% (214253646) splicing reads. 462863 splicing junctions. 217198 known splicing junctions. 245665 novel splicing junctions.
sampling 90% (226856802) splicing reads. 464703 splicing junctions. 217365 known splicing junctions. 247338 novel splicing junctions.
sampling 95% (239459958) splicing reads. 466168 splicing junctions. 217530 known splicing junctions. 248638 novel splicing junctions.
sampling 100% (252063114) splicing reads. 467283 splicing junctions. 217627 known splicing junctions. 249656 novel splicing junctions.
null device 
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