File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/3f2999a8544b0778e9aec04bd11dc4/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:52:55
                             Started mapping on |	Jun 08 09:59:32
                                    Finished on |	Jun 08 10:59:35
       Mapping speed, Million of reads per hour |	279.21

                          Number of input reads |	279446047
                      Average input read length |	240
                                    UNIQUE READS:
                   Uniquely mapped reads number |	266440295
                        Uniquely mapped reads % |	95.35%
                          Average mapped length |	239.83
                       Number of splices: Total |	285955807
            Number of splices: Annotated (sjdb) |	281104638
                       Number of splices: GT/AG |	281752156
                       Number of splices: GC/AG |	1961835
                       Number of splices: AT/AC |	218045
               Number of splices: Non-canonical |	2023771
                      Mismatch rate per base, % |	0.27%
                         Deletion rate per base |	0.05%
                        Deletion average length |	2.27
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.60
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	10368329
             % of reads mapped to multiple loci |	3.71%
        Number of reads mapped to too many loci |	173291
             % of reads mapped to too many loci |	0.06%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2246447
                 % of reads unmapped: too short |	0.80%
                Number of reads unmapped: other |	217685
                     % of reads unmapped: other |	0.08%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%