Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bUW-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bUW-T1-TRNA-1_B23WHTKLT4_1.md.bam --METRICS_FILE 659_bUW-T1-TRNA-1_B23WHTKLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
09:06:27.914 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 09:06:27 GMT 2026] MarkDuplicates --INPUT 659_bUW-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bUW-T1-TRNA-1_B23WHTKLT4_1.md.bam --METRICS_FILE 659_bUW-T1-TRNA-1_B23WHTKLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 09:06:27 GMT 2026] Executing as ?@nf-d0aa67d44bf69a95174d812f7ab9445f-2fece-vwz9n on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 09:06:27 MarkDuplicates Start of doWork freeMemory: 105828048; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 09:06:27 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 09:06:27 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 09:06:32 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 3s. Last read position: chr1:1,342,734
INFO 2026-06-08 09:06:32 MarkDuplicates Tracking 2304 as yet unmatched pairs. 393 records in RAM.
INFO 2026-06-08 09:06:34 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:2,586,858
INFO 2026-06-08 09:06:34 MarkDuplicates Tracking 4676 as yet unmatched pairs. 778 records in RAM.
INFO 2026-06-08 09:06:37 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:8,500,471
INFO 2026-06-08 09:06:37 MarkDuplicates Tracking 6000 as yet unmatched pairs. 317 records in RAM.
INFO 2026-06-08 09:06:38 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 1s. Last read position: chr1:10,629,715
INFO 2026-06-08 09:06:38 MarkDuplicates Tracking 7386 as yet unmatched pairs. 88 records in RAM.
INFO 2026-06-08 09:06:41 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:12,385,348
INFO 2026-06-08 09:06:41 MarkDuplicates Tracking 9293 as yet unmatched pairs. 286 records in RAM.
INFO 2026-06-08 09:06:42 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:16,992,541
INFO 2026-06-08 09:06:42 MarkDuplicates Tracking 11407 as yet unmatched pairs. 762 records in RAM.
INFO 2026-06-08 09:06:45 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:19,339,461
INFO 2026-06-08 09:06:45 MarkDuplicates Tracking 14086 as yet unmatched pairs. 1722 records in RAM.
INFO 2026-06-08 09:06:47 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:21,279,266
INFO 2026-06-08 09:06:47 MarkDuplicates Tracking 14474 as yet unmatched pairs. 603 records in RAM.
INFO 2026-06-08 09:06:49 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:22,639,183
INFO 2026-06-08 09:06:49 MarkDuplicates Tracking 16714 as yet unmatched pairs. 1124 records in RAM.
INFO 2026-06-08 09:06:51 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:23,868,116
INFO 2026-06-08 09:06:51 MarkDuplicates Tracking 17653 as yet unmatched pairs. 589 records in RAM.
INFO 2026-06-08 09:06:54 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:26,473,503
INFO 2026-06-08 09:06:54 MarkDuplicates Tracking 21704 as yet unmatched pairs. 3165 records in RAM.
INFO 2026-06-08 09:06:55 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:27,773,223
INFO 2026-06-08 09:06:55 MarkDuplicates Tracking 20149 as yet unmatched pairs. 48 records in RAM.
INFO 2026-06-08 09:06:58 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:31,434,120
INFO 2026-06-08 09:06:58 MarkDuplicates Tracking 24380 as yet unmatched pairs. 2752 records in RAM.
INFO 2026-06-08 09:06:59 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:32,672,515
INFO 2026-06-08 09:06:59 MarkDuplicates Tracking 25452 as yet unmatched pairs. 2116 records in RAM.
INFO 2026-06-08 09:07:01 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:35,192,778
INFO 2026-06-08 09:07:01 MarkDuplicates Tracking 26058 as yet unmatched pairs. 1006 records in RAM.
INFO 2026-06-08 09:07:03 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 2s. Last read position: chr1:38,991,443
INFO 2026-06-08 09:07:03 MarkDuplicates Tracking 27163 as yet unmatched pairs. 412 records in RAM.
INFO 2026-06-08 09:07:05 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:40,753,181
INFO 2026-06-08 09:07:05 MarkDuplicates Tracking 28689 as yet unmatched pairs. 518 records in RAM.
INFO 2026-06-08 09:07:07 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:43,588,968
INFO 2026-06-08 09:07:07 MarkDuplicates Tracking 31310 as yet unmatched pairs. 1420 records in RAM.
INFO 2026-06-08 09:07:09 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 2s. Last read position: chr1:45,004,598
INFO 2026-06-08 09:07:09 MarkDuplicates Tracking 31909 as yet unmatched pairs. 430 records in RAM.
INFO 2026-06-08 09:07:11 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:46,189,387
INFO 2026-06-08 09:07:11 MarkDuplicates Tracking 33436 as yet unmatched pairs. 473 records in RAM.
INFO 2026-06-08 09:07:14 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:52,237,855
INFO 2026-06-08 09:07:14 MarkDuplicates Tracking 34818 as yet unmatched pairs. 309 records in RAM.
INFO 2026-06-08 09:07:15 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:55,068,977
INFO 2026-06-08 09:07:15 MarkDuplicates Tracking 36526 as yet unmatched pairs. 416 records in RAM.
INFO 2026-06-08 09:07:17 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:65,218,798
INFO 2026-06-08 09:07:17 MarkDuplicates Tracking 38290 as yet unmatched pairs. 692 records in RAM.
INFO 2026-06-08 09:07:19 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:85,164,676
INFO 2026-06-08 09:07:19 MarkDuplicates Tracking 39069 as yet unmatched pairs. 121 records in RAM.
INFO 2026-06-08 09:07:21 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 2s. Last read position: chr1:92,840,553
INFO 2026-06-08 09:07:21 MarkDuplicates Tracking 43326 as yet unmatched pairs. 2909 records in RAM.
INFO 2026-06-08 09:07:23 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:103,526,199
INFO 2026-06-08 09:07:23 MarkDuplicates Tracking 42212 as yet unmatched pairs. 509 records in RAM.
INFO 2026-06-08 09:07:24 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:110,017,998
INFO 2026-06-08 09:07:24 MarkDuplicates Tracking 43708 as yet unmatched pairs. 535 records in RAM.
INFO 2026-06-08 09:07:26 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:112,929,164
INFO 2026-06-08 09:07:26 MarkDuplicates Tracking 45911 as yet unmatched pairs. 1223 records in RAM.
INFO 2026-06-08 09:07:28 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 2s. Last read position: chr1:116,384,829
INFO 2026-06-08 09:07:28 MarkDuplicates Tracking 51196 as yet unmatched pairs. 5061 records in RAM.
INFO 2026-06-08 09:07:31 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 2s. Last read position: chr1:117,941,126
INFO 2026-06-08 09:07:31 MarkDuplicates Tracking 47934 as yet unmatched pairs. 369 records in RAM.
INFO 2026-06-08 09:07:33 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 2s. Last read position: chr1:119,803,086
INFO 2026-06-08 09:07:33 MarkDuplicates Tracking 91986 as yet unmatched pairs. 42798 records in RAM.
INFO 2026-06-08 09:07:35 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:145,393,918
INFO 2026-06-08 09:07:35 MarkDuplicates Tracking 50510 as yet unmatched pairs. 86 records in RAM.
INFO 2026-06-08 09:07:37 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 2s. Last read position: chr1:148,123,895
INFO 2026-06-08 09:07:37 MarkDuplicates Tracking 51868 as yet unmatched pairs. 428 records in RAM.
INFO 2026-06-08 09:07:39 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:149,842,369
INFO 2026-06-08 09:07:39 MarkDuplicates Tracking 56670 as yet unmatched pairs. 4234 records in RAM.
INFO 2026-06-08 09:07:40 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:150,510,986
INFO 2026-06-08 09:07:40 MarkDuplicates Tracking 53942 as yet unmatched pairs. 363 records in RAM.
INFO 2026-06-08 09:07:42 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:151,369,723
INFO 2026-06-08 09:07:42 MarkDuplicates Tracking 55330 as yet unmatched pairs. 140 records in RAM.
INFO 2026-06-08 09:07:44 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:153,667,639
INFO 2026-06-08 09:07:44 MarkDuplicates Tracking 59078 as yet unmatched pairs. 2487 records in RAM.
INFO 2026-06-08 09:07:45 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:154,257,192
INFO 2026-06-08 09:07:45 MarkDuplicates Tracking 58867 as yet unmatched pairs. 789 records in RAM.
INFO 2026-06-08 09:07:47 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:155,172,742
INFO 2026-06-08 09:07:47 MarkDuplicates Tracking 62290 as yet unmatched pairs. 2546 records in RAM.
INFO 2026-06-08 09:07:49 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:155,729,083
INFO 2026-06-08 09:07:49 MarkDuplicates Tracking 61479 as yet unmatched pairs. 429 records in RAM.
INFO 2026-06-08 09:07:51 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:156,136,395
INFO 2026-06-08 09:07:51 MarkDuplicates Tracking 71293 as yet unmatched pairs. 8388 records in RAM.
INFO 2026-06-08 09:07:52 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:156,745,334
INFO 2026-06-08 09:07:52 MarkDuplicates Tracking 65546 as yet unmatched pairs. 953 records in RAM.
INFO 2026-06-08 09:07:54 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:161,073,265
INFO 2026-06-08 09:07:54 MarkDuplicates Tracking 66432 as yet unmatched pairs. 344 records in RAM.
INFO 2026-06-08 09:07:56 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:167,127,191
INFO 2026-06-08 09:07:56 MarkDuplicates Tracking 68835 as yet unmatched pairs. 1224 records in RAM.
INFO 2026-06-08 09:07:59 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 3s. Last read position: chr1:169,124,882
INFO 2026-06-08 09:07:59 MarkDuplicates Tracking 128773 as yet unmatched pairs. 59652 records in RAM.
INFO 2026-06-08 09:08:02 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 2s. Last read position: chr1:169,131,367
INFO 2026-06-08 09:08:02 MarkDuplicates Tracking 117720 as yet unmatched pairs. 47121 records in RAM.
INFO 2026-06-08 09:08:04 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:175,000,053
INFO 2026-06-08 09:08:04 MarkDuplicates Tracking 72419 as yet unmatched pairs. 284 records in RAM.
INFO 2026-06-08 09:08:05 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:182,839,441
INFO 2026-06-08 09:08:05 MarkDuplicates Tracking 74966 as yet unmatched pairs. 1211 records in RAM.
INFO 2026-06-08 09:08:07 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:186,338,119
INFO 2026-06-08 09:08:07 MarkDuplicates Tracking 76874 as yet unmatched pairs. 1635 records in RAM.
INFO 2026-06-08 09:08:09 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 2s. Last read position: chr1:201,387,118
INFO 2026-06-08 09:08:09 MarkDuplicates Tracking 79080 as yet unmatched pairs. 2395 records in RAM.
INFO 2026-06-08 09:08:12 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 2s. Last read position: chr1:203,739,859
INFO 2026-06-08 09:08:12 MarkDuplicates Tracking 78339 as yet unmatched pairs. 101 records in RAM.
INFO 2026-06-08 09:08:14 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 2s. Last read position: chr1:206,015,955
INFO 2026-06-08 09:08:14 MarkDuplicates Tracking 91344 as yet unmatched pairs. 11627 records in RAM.
INFO 2026-06-08 09:08:16 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:206,931,716
INFO 2026-06-08 09:08:16 MarkDuplicates Tracking 112484 as yet unmatched pairs. 31557 records in RAM.
INFO 2026-06-08 09:08:19 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 2s. Last read position: chr1:206,934,430
INFO 2026-06-08 09:08:19 MarkDuplicates Tracking 126973 as yet unmatched pairs. 44163 records in RAM.
INFO 2026-06-08 09:08:20 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:206,935,589
INFO 2026-06-08 09:08:20 MarkDuplicates Tracking 131005 as yet unmatched pairs. 46461 records in RAM.
INFO 2026-06-08 09:08:22 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr1:206,937,315
INFO 2026-06-08 09:08:22 MarkDuplicates Tracking 105262 as yet unmatched pairs. 19139 records in RAM.
INFO 2026-06-08 09:08:24 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr1:206,939,168
INFO 2026-06-08 09:08:24 MarkDuplicates Tracking 101531 as yet unmatched pairs. 14013 records in RAM.
INFO 2026-06-08 09:08:26 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr1:207,752,249
INFO 2026-06-08 09:08:26 MarkDuplicates Tracking 93353 as yet unmatched pairs. 4242 records in RAM.
INFO 2026-06-08 09:08:28 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 2s. Last read position: chr1:219,609,756
INFO 2026-06-08 09:08:28 MarkDuplicates Tracking 90675 as yet unmatched pairs. 12 records in RAM.
INFO 2026-06-08 09:08:31 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 3s. Last read position: chr1:224,305,087
INFO 2026-06-08 09:08:31 MarkDuplicates Tracking 92220 as yet unmatched pairs. 65 records in RAM.
INFO 2026-06-08 09:08:33 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr1:226,064,366
INFO 2026-06-08 09:08:33 MarkDuplicates Tracking 98829 as yet unmatched pairs. 4943 records in RAM.
INFO 2026-06-08 09:08:35 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr1:230,274,497
INFO 2026-06-08 09:08:35 MarkDuplicates Tracking 95944 as yet unmatched pairs. 349 records in RAM.
INFO 2026-06-08 09:08:37 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr1:236,041,971
INFO 2026-06-08 09:08:37 MarkDuplicates Tracking 97725 as yet unmatched pairs. 327 records in RAM.
INFO 2026-06-08 09:08:39 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr1:248,811,962
INFO 2026-06-08 09:08:39 MarkDuplicates Tracking 98955 as yet unmatched pairs. 225 records in RAM.
INFO 2026-06-08 09:08:41 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr2:10,441,885
INFO 2026-06-08 09:08:41 MarkDuplicates Tracking 101274 as yet unmatched pairs. 100739 records in RAM.
INFO 2026-06-08 09:08:43 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 2s. Last read position: chr2:20,037,598
INFO 2026-06-08 09:08:43 MarkDuplicates Tracking 105018 as yet unmatched pairs. 104480 records in RAM.
INFO 2026-06-08 09:08:46 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 2s. Last read position: chr2:26,109,850
INFO 2026-06-08 09:08:46 MarkDuplicates Tracking 104684 as yet unmatched pairs. 104138 records in RAM.
INFO 2026-06-08 09:08:49 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 3s. Last read position: chr2:27,436,797
INFO 2026-06-08 09:08:49 MarkDuplicates Tracking 106191 as yet unmatched pairs. 105640 records in RAM.
INFO 2026-06-08 09:08:51 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 2s. Last read position: chr2:32,465,080
INFO 2026-06-08 09:08:51 MarkDuplicates Tracking 107567 as yet unmatched pairs. 107008 records in RAM.
INFO 2026-06-08 09:08:53 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:08:53 MarkDuplicates Tracking 216171 as yet unmatched pairs. 97519 records in RAM.
INFO 2026-06-08 09:08:55 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,392
INFO 2026-06-08 09:08:55 MarkDuplicates Tracking 773564 as yet unmatched pairs. 53589 records in RAM.
INFO 2026-06-08 09:08:57 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,409
INFO 2026-06-08 09:08:57 MarkDuplicates Tracking 811108 as yet unmatched pairs. 50405 records in RAM.
INFO 2026-06-08 09:08:59 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:39,260,690
INFO 2026-06-08 09:08:59 MarkDuplicates Tracking 842159 as yet unmatched pairs. 46929 records in RAM.
INFO 2026-06-08 09:09:01 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 2s. Last read position: chr2:43,943,728
INFO 2026-06-08 09:09:01 MarkDuplicates Tracking 842021 as yet unmatched pairs. 46779 records in RAM.
INFO 2026-06-08 09:09:04 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 2s. Last read position: chr2:47,379,911
INFO 2026-06-08 09:09:04 MarkDuplicates Tracking 844291 as yet unmatched pairs. 49045 records in RAM.
INFO 2026-06-08 09:09:06 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:54,645,395
INFO 2026-06-08 09:09:06 MarkDuplicates Tracking 839301 as yet unmatched pairs. 44048 records in RAM.
INFO 2026-06-08 09:09:07 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:61,017,768
INFO 2026-06-08 09:09:07 MarkDuplicates Tracking 836531 as yet unmatched pairs. 41272 records in RAM.
INFO 2026-06-08 09:09:09 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:65,239,881
INFO 2026-06-08 09:09:09 MarkDuplicates Tracking 838440 as yet unmatched pairs. 43170 records in RAM.
INFO 2026-06-08 09:09:12 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 2s. Last read position: chr2:70,281,518
INFO 2026-06-08 09:09:12 MarkDuplicates Tracking 833488 as yet unmatched pairs. 38215 records in RAM.
INFO 2026-06-08 09:09:15 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 2s. Last read position: chr2:74,425,081
INFO 2026-06-08 09:09:15 MarkDuplicates Tracking 831675 as yet unmatched pairs. 36401 records in RAM.
INFO 2026-06-08 09:09:17 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:85,351,723
INFO 2026-06-08 09:09:17 MarkDuplicates Tracking 830763 as yet unmatched pairs. 35480 records in RAM.
INFO 2026-06-08 09:09:19 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:88,123,046
INFO 2026-06-08 09:09:19 MarkDuplicates Tracking 831570 as yet unmatched pairs. 36283 records in RAM.
INFO 2026-06-08 09:09:20 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:96,290,712
INFO 2026-06-08 09:09:20 MarkDuplicates Tracking 827765 as yet unmatched pairs. 32475 records in RAM.
INFO 2026-06-08 09:09:22 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:101,002,702
INFO 2026-06-08 09:09:22 MarkDuplicates Tracking 829620 as yet unmatched pairs. 34324 records in RAM.
INFO 2026-06-08 09:09:24 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:108,673,017
INFO 2026-06-08 09:09:24 MarkDuplicates Tracking 824874 as yet unmatched pairs. 29573 records in RAM.
INFO 2026-06-08 09:09:26 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:110,085,741
INFO 2026-06-08 09:09:26 MarkDuplicates Tracking 826311 as yet unmatched pairs. 31005 records in RAM.
INFO 2026-06-08 09:09:27 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:113,201,348
INFO 2026-06-08 09:09:27 MarkDuplicates Tracking 822387 as yet unmatched pairs. 27072 records in RAM.
INFO 2026-06-08 09:09:30 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 2s. Last read position: chr2:127,624,289
INFO 2026-06-08 09:09:30 MarkDuplicates Tracking 821717 as yet unmatched pairs. 26368 records in RAM.
INFO 2026-06-08 09:09:33 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 3s. Last read position: chr2:135,162,422
INFO 2026-06-08 09:09:33 MarkDuplicates Tracking 819588 as yet unmatched pairs. 24218 records in RAM.
INFO 2026-06-08 09:09:35 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:158,658,172
INFO 2026-06-08 09:09:35 MarkDuplicates Tracking 818484 as yet unmatched pairs. 23098 records in RAM.
INFO 2026-06-08 09:09:37 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:169,798,895
INFO 2026-06-08 09:09:37 MarkDuplicates Tracking 816193 as yet unmatched pairs. 20784 records in RAM.
INFO 2026-06-08 09:09:38 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:173,956,199
INFO 2026-06-08 09:09:38 MarkDuplicates Tracking 815231 as yet unmatched pairs. 19809 records in RAM.
INFO 2026-06-08 09:09:40 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr2:181,921,961
INFO 2026-06-08 09:09:40 MarkDuplicates Tracking 814420 as yet unmatched pairs. 18978 records in RAM.
INFO 2026-06-08 09:09:42 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:189,565,351
INFO 2026-06-08 09:09:42 MarkDuplicates Tracking 813241 as yet unmatched pairs. 17790 records in RAM.
INFO 2026-06-08 09:09:44 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:197,489,128
INFO 2026-06-08 09:09:44 MarkDuplicates Tracking 811483 as yet unmatched pairs. 16030 records in RAM.
INFO 2026-06-08 09:09:46 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr2:202,788,970
INFO 2026-06-08 09:09:46 MarkDuplicates Tracking 808928 as yet unmatched pairs. 13456 records in RAM.
INFO 2026-06-08 09:09:48 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:210,104,268
INFO 2026-06-08 09:09:48 MarkDuplicates Tracking 807621 as yet unmatched pairs. 12141 records in RAM.
INFO 2026-06-08 09:09:50 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr2:216,633,875
INFO 2026-06-08 09:09:50 MarkDuplicates Tracking 808001 as yet unmatched pairs. 12513 records in RAM.
INFO 2026-06-08 09:09:53 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 3s. Last read position: chr2:219,162,105
INFO 2026-06-08 09:09:53 MarkDuplicates Tracking 804439 as yet unmatched pairs. 8943 records in RAM.
INFO 2026-06-08 09:09:56 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 2s. Last read position: chr2:223,991,815
INFO 2026-06-08 09:09:56 MarkDuplicates Tracking 803582 as yet unmatched pairs. 8080 records in RAM.
INFO 2026-06-08 09:09:58 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr2:230,878,525
INFO 2026-06-08 09:09:58 MarkDuplicates Tracking 805187 as yet unmatched pairs. 9682 records in RAM.
INFO 2026-06-08 09:09:59 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr2:232,881,145
INFO 2026-06-08 09:09:59 MarkDuplicates Tracking 800090 as yet unmatched pairs. 4575 records in RAM.
INFO 2026-06-08 09:10:01 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr2:238,170,575
INFO 2026-06-08 09:10:01 MarkDuplicates Tracking 798279 as yet unmatched pairs. 2745 records in RAM.
INFO 2026-06-08 09:10:03 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr2:241,262,839
INFO 2026-06-08 09:10:03 MarkDuplicates Tracking 797975 as yet unmatched pairs. 2427 records in RAM.
INFO 2026-06-08 09:10:06 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 2s. Last read position: chr3:9,827,043
INFO 2026-06-08 09:10:06 MarkDuplicates Tracking 794872 as yet unmatched pairs. 43955 records in RAM.
INFO 2026-06-08 09:10:07 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:13,323,373
INFO 2026-06-08 09:10:07 MarkDuplicates Tracking 793172 as yet unmatched pairs. 42244 records in RAM.
INFO 2026-06-08 09:10:09 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:30,691,457
INFO 2026-06-08 09:10:09 MarkDuplicates Tracking 792652 as yet unmatched pairs. 41708 records in RAM.
INFO 2026-06-08 09:10:11 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:37,533,335
INFO 2026-06-08 09:10:11 MarkDuplicates Tracking 790282 as yet unmatched pairs. 39320 records in RAM.
INFO 2026-06-08 09:10:13 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:40,462,047
INFO 2026-06-08 09:10:13 MarkDuplicates Tracking 791993 as yet unmatched pairs. 41031 records in RAM.
INFO 2026-06-08 09:10:15 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr3:44,659,847
INFO 2026-06-08 09:10:15 MarkDuplicates Tracking 787013 as yet unmatched pairs. 36045 records in RAM.
INFO 2026-06-08 09:10:17 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:47,057,198
INFO 2026-06-08 09:10:17 MarkDuplicates Tracking 785632 as yet unmatched pairs. 34656 records in RAM.
INFO 2026-06-08 09:10:19 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 2s. Last read position: chr3:48,422,784
INFO 2026-06-08 09:10:19 MarkDuplicates Tracking 784689 as yet unmatched pairs. 33711 records in RAM.
INFO 2026-06-08 09:10:23 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 3s. Last read position: chr3:49,056,988
INFO 2026-06-08 09:10:23 MarkDuplicates Tracking 782359 as yet unmatched pairs. 31381 records in RAM.
INFO 2026-06-08 09:10:24 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:49,681,945
INFO 2026-06-08 09:10:24 MarkDuplicates Tracking 781436 as yet unmatched pairs. 30456 records in RAM.
INFO 2026-06-08 09:10:26 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:51,392,852
INFO 2026-06-08 09:10:26 MarkDuplicates Tracking 778879 as yet unmatched pairs. 27893 records in RAM.
INFO 2026-06-08 09:10:28 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:52,476,530
INFO 2026-06-08 09:10:28 MarkDuplicates Tracking 777571 as yet unmatched pairs. 26572 records in RAM.
INFO 2026-06-08 09:10:30 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:56,737,197
INFO 2026-06-08 09:10:30 MarkDuplicates Tracking 775781 as yet unmatched pairs. 24780 records in RAM.
INFO 2026-06-08 09:10:32 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr3:58,148,686
INFO 2026-06-08 09:10:32 MarkDuplicates Tracking 776556 as yet unmatched pairs. 25536 records in RAM.
INFO 2026-06-08 09:10:34 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr3:69,077,832
INFO 2026-06-08 09:10:34 MarkDuplicates Tracking 772769 as yet unmatched pairs. 21736 records in RAM.
INFO 2026-06-08 09:10:36 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:101,367,847
INFO 2026-06-08 09:10:36 MarkDuplicates Tracking 771543 as yet unmatched pairs. 20506 records in RAM.
INFO 2026-06-08 09:10:37 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr3:113,798,242
INFO 2026-06-08 09:10:37 MarkDuplicates Tracking 770432 as yet unmatched pairs. 19389 records in RAM.
INFO 2026-06-08 09:10:39 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr3:123,447,908
INFO 2026-06-08 09:10:39 MarkDuplicates Tracking 768644 as yet unmatched pairs. 17580 records in RAM.
INFO 2026-06-08 09:10:41 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:127,619,250
INFO 2026-06-08 09:10:41 MarkDuplicates Tracking 767317 as yet unmatched pairs. 16239 records in RAM.
INFO 2026-06-08 09:10:43 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr3:129,389,665
INFO 2026-06-08 09:10:43 MarkDuplicates Tracking 765594 as yet unmatched pairs. 14507 records in RAM.
INFO 2026-06-08 09:10:46 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 2s. Last read position: chr3:136,521,273
INFO 2026-06-08 09:10:46 MarkDuplicates Tracking 764553 as yet unmatched pairs. 13457 records in RAM.
INFO 2026-06-08 09:10:48 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 2s. Last read position: chr3:146,521,988
INFO 2026-06-08 09:10:48 MarkDuplicates Tracking 764222 as yet unmatched pairs. 13122 records in RAM.
INFO 2026-06-08 09:10:51 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 2s. Last read position: chr3:158,669,582
INFO 2026-06-08 09:10:51 MarkDuplicates Tracking 761864 as yet unmatched pairs. 10754 records in RAM.
INFO 2026-06-08 09:10:53 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr3:171,369,634
INFO 2026-06-08 09:10:53 MarkDuplicates Tracking 760461 as yet unmatched pairs. 9328 records in RAM.
INFO 2026-06-08 09:10:55 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 2s. Last read position: chr3:183,987,763
INFO 2026-06-08 09:10:55 MarkDuplicates Tracking 758834 as yet unmatched pairs. 7685 records in RAM.
INFO 2026-06-08 09:10:57 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr3:184,929,654
INFO 2026-06-08 09:10:57 MarkDuplicates Tracking 757228 as yet unmatched pairs. 6074 records in RAM.
INFO 2026-06-08 09:10:58 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr3:193,626,140
INFO 2026-06-08 09:10:58 MarkDuplicates Tracking 755739 as yet unmatched pairs. 4576 records in RAM.
INFO 2026-06-08 09:11:00 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr3:195,753,222
INFO 2026-06-08 09:11:00 MarkDuplicates Tracking 756385 as yet unmatched pairs. 5218 records in RAM.
INFO 2026-06-08 09:11:02 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr3:195,782,533
INFO 2026-06-08 09:11:02 MarkDuplicates Tracking 759036 as yet unmatched pairs. 7862 records in RAM.
INFO 2026-06-08 09:11:03 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr3:195,789,167
INFO 2026-06-08 09:11:03 MarkDuplicates Tracking 753415 as yet unmatched pairs. 2237 records in RAM.
INFO 2026-06-08 09:11:05 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 2s. Last read position: chr3:197,951,196
INFO 2026-06-08 09:11:05 MarkDuplicates Tracking 753068 as yet unmatched pairs. 1888 records in RAM.
INFO 2026-06-08 09:11:08 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 2s. Last read position: chr4:1,806,624
INFO 2026-06-08 09:11:08 MarkDuplicates Tracking 749880 as yet unmatched pairs. 24365 records in RAM.
INFO 2026-06-08 09:11:11 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 2s. Last read position: chr4:6,291,261
INFO 2026-06-08 09:11:11 MarkDuplicates Tracking 747929 as yet unmatched pairs. 22411 records in RAM.
INFO 2026-06-08 09:11:13 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr4:15,625,501
INFO 2026-06-08 09:11:13 MarkDuplicates Tracking 746903 as yet unmatched pairs. 21383 records in RAM.
INFO 2026-06-08 09:11:15 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr4:37,846,981
INFO 2026-06-08 09:11:15 MarkDuplicates Tracking 744592 as yet unmatched pairs. 19065 records in RAM.
INFO 2026-06-08 09:11:16 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr4:42,524,798
INFO 2026-06-08 09:11:16 MarkDuplicates Tracking 743643 as yet unmatched pairs. 18100 records in RAM.
INFO 2026-06-08 09:11:18 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr4:55,860,410
INFO 2026-06-08 09:11:18 MarkDuplicates Tracking 741758 as yet unmatched pairs. 16211 records in RAM.
INFO 2026-06-08 09:11:20 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr4:70,824,316
INFO 2026-06-08 09:11:20 MarkDuplicates Tracking 741404 as yet unmatched pairs. 15842 records in RAM.
INFO 2026-06-08 09:11:22 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr4:76,134,325
INFO 2026-06-08 09:11:22 MarkDuplicates Tracking 739135 as yet unmatched pairs. 13556 records in RAM.
INFO 2026-06-08 09:11:24 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr4:82,355,371
INFO 2026-06-08 09:11:24 MarkDuplicates Tracking 739026 as yet unmatched pairs. 13439 records in RAM.
INFO 2026-06-08 09:11:26 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr4:88,676,346
INFO 2026-06-08 09:11:26 MarkDuplicates Tracking 736048 as yet unmatched pairs. 10441 records in RAM.
INFO 2026-06-08 09:11:27 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr4:105,276,407
INFO 2026-06-08 09:11:27 MarkDuplicates Tracking 734601 as yet unmatched pairs. 8973 records in RAM.
INFO 2026-06-08 09:11:30 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 2s. Last read position: chr4:119,031,392
INFO 2026-06-08 09:11:30 MarkDuplicates Tracking 733527 as yet unmatched pairs. 7894 records in RAM.
INFO 2026-06-08 09:11:33 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 2s. Last read position: chr4:139,351,523
INFO 2026-06-08 09:11:33 MarkDuplicates Tracking 732098 as yet unmatched pairs. 6455 records in RAM.
INFO 2026-06-08 09:11:35 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 2s. Last read position: chr4:150,852,750
INFO 2026-06-08 09:11:35 MarkDuplicates Tracking 730874 as yet unmatched pairs. 5216 records in RAM.
INFO 2026-06-08 09:11:37 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr4:155,905,080
INFO 2026-06-08 09:11:37 MarkDuplicates Tracking 728873 as yet unmatched pairs. 3206 records in RAM.
INFO 2026-06-08 09:11:39 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr4:183,447,220
INFO 2026-06-08 09:11:39 MarkDuplicates Tracking 727685 as yet unmatched pairs. 2005 records in RAM.
INFO 2026-06-08 09:11:41 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr4:186,707,059
INFO 2026-06-08 09:11:41 MarkDuplicates Tracking 727888 as yet unmatched pairs. 2206 records in RAM.
INFO 2026-06-08 09:11:43 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 2s. Last read position: chr5:6,611,050
INFO 2026-06-08 09:11:43 MarkDuplicates Tracking 724846 as yet unmatched pairs. 36554 records in RAM.
INFO 2026-06-08 09:11:45 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:14,492,766
INFO 2026-06-08 09:11:45 MarkDuplicates Tracking 723116 as yet unmatched pairs. 34815 records in RAM.
INFO 2026-06-08 09:11:47 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 2s. Last read position: chr5:36,985,406
INFO 2026-06-08 09:11:47 MarkDuplicates Tracking 721885 as yet unmatched pairs. 33554 records in RAM.
INFO 2026-06-08 09:11:49 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:43,650,536
INFO 2026-06-08 09:11:49 MarkDuplicates Tracking 720838 as yet unmatched pairs. 32502 records in RAM.
INFO 2026-06-08 09:11:51 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 2s. Last read position: chr5:66,021,335
INFO 2026-06-08 09:11:51 MarkDuplicates Tracking 719350 as yet unmatched pairs. 30990 records in RAM.
INFO 2026-06-08 09:11:54 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 3s. Last read position: chr5:72,220,901
INFO 2026-06-08 09:11:54 MarkDuplicates Tracking 718189 as yet unmatched pairs. 29820 records in RAM.
INFO 2026-06-08 09:11:56 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 2s. Last read position: chr5:76,674,558
INFO 2026-06-08 09:11:56 MarkDuplicates Tracking 716626 as yet unmatched pairs. 28239 records in RAM.
INFO 2026-06-08 09:11:58 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr5:83,539,027
INFO 2026-06-08 09:11:58 MarkDuplicates Tracking 715121 as yet unmatched pairs. 26728 records in RAM.
INFO 2026-06-08 09:11:59 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr5:96,800,971
INFO 2026-06-08 09:11:59 MarkDuplicates Tracking 713975 as yet unmatched pairs. 25582 records in RAM.
INFO 2026-06-08 09:12:01 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr5:115,841,324
INFO 2026-06-08 09:12:01 MarkDuplicates Tracking 712345 as yet unmatched pairs. 23948 records in RAM.
INFO 2026-06-08 09:12:03 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr5:128,141,969
INFO 2026-06-08 09:12:03 MarkDuplicates Tracking 713579 as yet unmatched pairs. 25176 records in RAM.
INFO 2026-06-08 09:12:05 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr5:133,091,279
INFO 2026-06-08 09:12:05 MarkDuplicates Tracking 709675 as yet unmatched pairs. 21266 records in RAM.
INFO 2026-06-08 09:12:07 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 2s. Last read position: chr5:136,053,111
INFO 2026-06-08 09:12:07 MarkDuplicates Tracking 710703 as yet unmatched pairs. 22278 records in RAM.
INFO 2026-06-08 09:12:09 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr5:138,925,344
INFO 2026-06-08 09:12:09 MarkDuplicates Tracking 708945 as yet unmatched pairs. 20515 records in RAM.
INFO 2026-06-08 09:12:11 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr5:140,683,168
INFO 2026-06-08 09:12:11 MarkDuplicates Tracking 704876 as yet unmatched pairs. 16441 records in RAM.
INFO 2026-06-08 09:12:13 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 2s. Last read position: chr5:142,314,437
INFO 2026-06-08 09:12:13 MarkDuplicates Tracking 704123 as yet unmatched pairs. 15680 records in RAM.
INFO 2026-06-08 09:12:16 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 2s. Last read position: chr5:150,166,868
INFO 2026-06-08 09:12:16 MarkDuplicates Tracking 702462 as yet unmatched pairs. 14011 records in RAM.
INFO 2026-06-08 09:12:18 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 2s. Last read position: chr5:150,412,657
INFO 2026-06-08 09:12:18 MarkDuplicates Tracking 700424 as yet unmatched pairs. 11973 records in RAM.
INFO 2026-06-08 09:12:20 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr5:154,805,908
INFO 2026-06-08 09:12:20 MarkDuplicates Tracking 699766 as yet unmatched pairs. 11309 records in RAM.
INFO 2026-06-08 09:12:21 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr5:163,516,604
INFO 2026-06-08 09:12:21 MarkDuplicates Tracking 698717 as yet unmatched pairs. 10257 records in RAM.
INFO 2026-06-08 09:12:23 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr5:171,392,913
INFO 2026-06-08 09:12:23 MarkDuplicates Tracking 709727 as yet unmatched pairs. 21263 records in RAM.
INFO 2026-06-08 09:12:25 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr5:176,494,050
INFO 2026-06-08 09:12:25 MarkDuplicates Tracking 694397 as yet unmatched pairs. 5920 records in RAM.
INFO 2026-06-08 09:12:27 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr5:177,882,364
INFO 2026-06-08 09:12:27 MarkDuplicates Tracking 692680 as yet unmatched pairs. 4198 records in RAM.
INFO 2026-06-08 09:12:29 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr5:179,799,204
INFO 2026-06-08 09:12:29 MarkDuplicates Tracking 692712 as yet unmatched pairs. 4224 records in RAM.
INFO 2026-06-08 09:12:31 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr5:180,950,183
INFO 2026-06-08 09:12:31 MarkDuplicates Tracking 689797 as yet unmatched pairs. 1300 records in RAM.
INFO 2026-06-08 09:12:33 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 2s. Last read position: chr6:2,833,740
INFO 2026-06-08 09:12:33 MarkDuplicates Tracking 691492 as yet unmatched pairs. 48269 records in RAM.
INFO 2026-06-08 09:12:35 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr6:7,246,984
INFO 2026-06-08 09:12:35 MarkDuplicates Tracking 686797 as yet unmatched pairs. 43573 records in RAM.
INFO 2026-06-08 09:12:37 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:11,191,034
INFO 2026-06-08 09:12:37 MarkDuplicates Tracking 685166 as yet unmatched pairs. 41927 records in RAM.
INFO 2026-06-08 09:12:38 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr6:24,666,587
INFO 2026-06-08 09:12:38 MarkDuplicates Tracking 683493 as yet unmatched pairs. 40251 records in RAM.
INFO 2026-06-08 09:12:40 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:26,199,615
INFO 2026-06-08 09:12:40 MarkDuplicates Tracking 682890 as yet unmatched pairs. 39643 records in RAM.
INFO 2026-06-08 09:12:43 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 2s. Last read position: chr6:27,808,399
INFO 2026-06-08 09:12:43 MarkDuplicates Tracking 685146 as yet unmatched pairs. 41892 records in RAM.
INFO 2026-06-08 09:12:45 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 2s. Last read position: chr6:29,889,346
INFO 2026-06-08 09:12:45 MarkDuplicates Tracking 679752 as yet unmatched pairs. 36490 records in RAM.
INFO 2026-06-08 09:12:47 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:30,640,517
INFO 2026-06-08 09:12:47 MarkDuplicates Tracking 677570 as yet unmatched pairs. 34305 records in RAM.
INFO 2026-06-08 09:12:48 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr6:31,271,783
INFO 2026-06-08 09:12:48 MarkDuplicates Tracking 684571 as yet unmatched pairs. 41299 records in RAM.
INFO 2026-06-08 09:12:50 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr6:31,644,991
INFO 2026-06-08 09:12:50 MarkDuplicates Tracking 674749 as yet unmatched pairs. 31467 records in RAM.
INFO 2026-06-08 09:12:52 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,130
INFO 2026-06-08 09:12:52 MarkDuplicates Tracking 674418 as yet unmatched pairs. 31125 records in RAM.
INFO 2026-06-08 09:12:54 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr6:32,050,228
INFO 2026-06-08 09:12:54 MarkDuplicates Tracking 671776 as yet unmatched pairs. 28473 records in RAM.
INFO 2026-06-08 09:12:57 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 2s. Last read position: chr6:33,069,137
INFO 2026-06-08 09:12:57 MarkDuplicates Tracking 670814 as yet unmatched pairs. 27500 records in RAM.
INFO 2026-06-08 09:12:59 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 2s. Last read position: chr6:33,659,044
INFO 2026-06-08 09:12:59 MarkDuplicates Tracking 669361 as yet unmatched pairs. 26046 records in RAM.
INFO 2026-06-08 09:13:01 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr6:35,470,598
INFO 2026-06-08 09:13:01 MarkDuplicates Tracking 670365 as yet unmatched pairs. 27042 records in RAM.
INFO 2026-06-08 09:13:03 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr6:41,787,723
INFO 2026-06-08 09:13:03 MarkDuplicates Tracking 666046 as yet unmatched pairs. 22720 records in RAM.
INFO 2026-06-08 09:13:05 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr6:43,448,887
INFO 2026-06-08 09:13:05 MarkDuplicates Tracking 663628 as yet unmatched pairs. 20295 records in RAM.
INFO 2026-06-08 09:13:07 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr6:47,253,267
INFO 2026-06-08 09:13:07 MarkDuplicates Tracking 663024 as yet unmatched pairs. 19680 records in RAM.
INFO 2026-06-08 09:13:09 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr6:56,634,582
INFO 2026-06-08 09:13:09 MarkDuplicates Tracking 661066 as yet unmatched pairs. 17708 records in RAM.
INFO 2026-06-08 09:13:11 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 2s. Last read position: chr6:75,817,506
INFO 2026-06-08 09:13:11 MarkDuplicates Tracking 659966 as yet unmatched pairs. 16587 records in RAM.
INFO 2026-06-08 09:13:14 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 3s. Last read position: chr6:85,637,018
INFO 2026-06-08 09:13:14 MarkDuplicates Tracking 659100 as yet unmatched pairs. 15710 records in RAM.
INFO 2026-06-08 09:13:16 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 2s. Last read position: chr6:106,512,136
INFO 2026-06-08 09:13:16 MarkDuplicates Tracking 656458 as yet unmatched pairs. 13052 records in RAM.
INFO 2026-06-08 09:13:18 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr6:109,441,561
INFO 2026-06-08 09:13:18 MarkDuplicates Tracking 655249 as yet unmatched pairs. 11838 records in RAM.
INFO 2026-06-08 09:13:20 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr6:119,188,386
INFO 2026-06-08 09:13:20 MarkDuplicates Tracking 653302 as yet unmatched pairs. 9888 records in RAM.
INFO 2026-06-08 09:13:22 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr6:132,816,528
INFO 2026-06-08 09:13:22 MarkDuplicates Tracking 656372 as yet unmatched pairs. 12941 records in RAM.
INFO 2026-06-08 09:13:23 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr6:138,289,897
INFO 2026-06-08 09:13:23 MarkDuplicates Tracking 650732 as yet unmatched pairs. 7288 records in RAM.
INFO 2026-06-08 09:13:25 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr6:148,343,097
INFO 2026-06-08 09:13:25 MarkDuplicates Tracking 648950 as yet unmatched pairs. 5498 records in RAM.
INFO 2026-06-08 09:13:27 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr6:158,503,783
INFO 2026-06-08 09:13:27 MarkDuplicates Tracking 647346 as yet unmatched pairs. 3887 records in RAM.
INFO 2026-06-08 09:13:29 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr6:159,692,697
INFO 2026-06-08 09:13:29 MarkDuplicates Tracking 648358 as yet unmatched pairs. 4893 records in RAM.
INFO 2026-06-08 09:13:30 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr6:167,962,545
INFO 2026-06-08 09:13:30 MarkDuplicates Tracking 644832 as yet unmatched pairs. 1359 records in RAM.
INFO 2026-06-08 09:13:33 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 2s. Last read position: chr7:2,355,326
INFO 2026-06-08 09:13:33 MarkDuplicates Tracking 643518 as yet unmatched pairs. 52136 records in RAM.
INFO 2026-06-08 09:13:35 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 2s. Last read position: chr7:5,388,710
INFO 2026-06-08 09:13:35 MarkDuplicates Tracking 640646 as yet unmatched pairs. 49262 records in RAM.
INFO 2026-06-08 09:13:38 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 2s. Last read position: chr7:5,528,695
INFO 2026-06-08 09:13:38 MarkDuplicates Tracking 646499 as yet unmatched pairs. 55113 records in RAM.
INFO 2026-06-08 09:13:40 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr7:6,747,064
INFO 2026-06-08 09:13:40 MarkDuplicates Tracking 637041 as yet unmatched pairs. 45654 records in RAM.
INFO 2026-06-08 09:13:42 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr7:16,801,151
INFO 2026-06-08 09:13:42 MarkDuplicates Tracking 640814 as yet unmatched pairs. 49421 records in RAM.
INFO 2026-06-08 09:13:44 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr7:26,202,976
INFO 2026-06-08 09:13:44 MarkDuplicates Tracking 634868 as yet unmatched pairs. 43469 records in RAM.
INFO 2026-06-08 09:13:45 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr7:39,951,007
INFO 2026-06-08 09:13:45 MarkDuplicates Tracking 633140 as yet unmatched pairs. 41726 records in RAM.
INFO 2026-06-08 09:13:47 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr7:44,801,292
INFO 2026-06-08 09:13:47 MarkDuplicates Tracking 634990 as yet unmatched pairs. 43565 records in RAM.
INFO 2026-06-08 09:13:49 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr7:56,102,866
INFO 2026-06-08 09:13:49 MarkDuplicates Tracking 632504 as yet unmatched pairs. 41075 records in RAM.
INFO 2026-06-08 09:13:51 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr7:73,304,982
INFO 2026-06-08 09:13:51 MarkDuplicates Tracking 628792 as yet unmatched pairs. 37361 records in RAM.
INFO 2026-06-08 09:13:53 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr7:74,749,373
INFO 2026-06-08 09:13:53 MarkDuplicates Tracking 626850 as yet unmatched pairs. 35405 records in RAM.
INFO 2026-06-08 09:13:54 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr7:76,304,064
INFO 2026-06-08 09:13:54 MarkDuplicates Tracking 627293 as yet unmatched pairs. 35841 records in RAM.
INFO 2026-06-08 09:13:57 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 3s. Last read position: chr7:92,062,404
INFO 2026-06-08 09:13:57 MarkDuplicates Tracking 624446 as yet unmatched pairs. 32983 records in RAM.
INFO 2026-06-08 09:14:00 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 2s. Last read position: chr7:98,194,273
INFO 2026-06-08 09:14:00 MarkDuplicates Tracking 622584 as yet unmatched pairs. 31115 records in RAM.
INFO 2026-06-08 09:14:01 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr7:99,679,860
INFO 2026-06-08 09:14:01 MarkDuplicates Tracking 620910 as yet unmatched pairs. 29435 records in RAM.
INFO 2026-06-08 09:14:03 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr7:100,805,289
INFO 2026-06-08 09:14:03 MarkDuplicates Tracking 619774 as yet unmatched pairs. 28287 records in RAM.
INFO 2026-06-08 09:14:05 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr7:100,991,642
INFO 2026-06-08 09:14:05 MarkDuplicates Tracking 621341 as yet unmatched pairs. 29849 records in RAM.
INFO 2026-06-08 09:14:07 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 1s. Last read position: chr7:100,992,779
INFO 2026-06-08 09:14:07 MarkDuplicates Tracking 625568 as yet unmatched pairs. 34075 records in RAM.
INFO 2026-06-08 09:14:08 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,313
INFO 2026-06-08 09:14:08 MarkDuplicates Tracking 624973 as yet unmatched pairs. 33480 records in RAM.
INFO 2026-06-08 09:14:10 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,750
INFO 2026-06-08 09:14:10 MarkDuplicates Tracking 621734 as yet unmatched pairs. 30241 records in RAM.
INFO 2026-06-08 09:14:11 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,645
INFO 2026-06-08 09:14:11 MarkDuplicates Tracking 626239 as yet unmatched pairs. 34746 records in RAM.
INFO 2026-06-08 09:14:12 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,998
INFO 2026-06-08 09:14:12 MarkDuplicates Tracking 625688 as yet unmatched pairs. 34195 records in RAM.
INFO 2026-06-08 09:14:14 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,322
INFO 2026-06-08 09:14:14 MarkDuplicates Tracking 630862 as yet unmatched pairs. 39369 records in RAM.
INFO 2026-06-08 09:14:15 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,081
INFO 2026-06-08 09:14:15 MarkDuplicates Tracking 628005 as yet unmatched pairs. 36507 records in RAM.
INFO 2026-06-08 09:14:17 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,337
INFO 2026-06-08 09:14:17 MarkDuplicates Tracking 639847 as yet unmatched pairs. 48349 records in RAM.
INFO 2026-06-08 09:14:18 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,514
INFO 2026-06-08 09:14:18 MarkDuplicates Tracking 627649 as yet unmatched pairs. 36151 records in RAM.
INFO 2026-06-08 09:14:20 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,928
INFO 2026-06-08 09:14:20 MarkDuplicates Tracking 678672 as yet unmatched pairs. 87173 records in RAM.
INFO 2026-06-08 09:14:21 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,361
INFO 2026-06-08 09:14:21 MarkDuplicates Tracking 628488 as yet unmatched pairs. 36989 records in RAM.
INFO 2026-06-08 09:14:23 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,863
INFO 2026-06-08 09:14:23 MarkDuplicates Tracking 650399 as yet unmatched pairs. 58900 records in RAM.
INFO 2026-06-08 09:14:24 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,062
INFO 2026-06-08 09:14:24 MarkDuplicates Tracking 638706 as yet unmatched pairs. 47207 records in RAM.
INFO 2026-06-08 09:14:26 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,412
INFO 2026-06-08 09:14:26 MarkDuplicates Tracking 626740 as yet unmatched pairs. 35241 records in RAM.
INFO 2026-06-08 09:14:27 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,704
INFO 2026-06-08 09:14:27 MarkDuplicates Tracking 652732 as yet unmatched pairs. 61229 records in RAM.
INFO 2026-06-08 09:14:29 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,327
INFO 2026-06-08 09:14:29 MarkDuplicates Tracking 628812 as yet unmatched pairs. 37308 records in RAM.
INFO 2026-06-08 09:14:31 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 2s. Last read position: chr7:100,999,690
INFO 2026-06-08 09:14:31 MarkDuplicates Tracking 648251 as yet unmatched pairs. 56744 records in RAM.
INFO 2026-06-08 09:14:33 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 2s. Last read position: chr7:100,999,992
INFO 2026-06-08 09:14:33 MarkDuplicates Tracking 644305 as yet unmatched pairs. 52798 records in RAM.
INFO 2026-06-08 09:14:35 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,434
INFO 2026-06-08 09:14:35 MarkDuplicates Tracking 655370 as yet unmatched pairs. 63863 records in RAM.
INFO 2026-06-08 09:14:37 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,768
INFO 2026-06-08 09:14:37 MarkDuplicates Tracking 671771 as yet unmatched pairs. 80264 records in RAM.
INFO 2026-06-08 09:14:38 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,044
INFO 2026-06-08 09:14:38 MarkDuplicates Tracking 630983 as yet unmatched pairs. 39476 records in RAM.
INFO 2026-06-08 09:14:40 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,330
INFO 2026-06-08 09:14:40 MarkDuplicates Tracking 630983 as yet unmatched pairs. 39467 records in RAM.
INFO 2026-06-08 09:14:41 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,665
INFO 2026-06-08 09:14:41 MarkDuplicates Tracking 616920 as yet unmatched pairs. 25404 records in RAM.
INFO 2026-06-08 09:14:43 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,370
INFO 2026-06-08 09:14:43 MarkDuplicates Tracking 628263 as yet unmatched pairs. 36747 records in RAM.
INFO 2026-06-08 09:14:44 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,898
INFO 2026-06-08 09:14:44 MarkDuplicates Tracking 655672 as yet unmatched pairs. 64156 records in RAM.
INFO 2026-06-08 09:14:46 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr7:101,003,690
INFO 2026-06-08 09:14:46 MarkDuplicates Tracking 610182 as yet unmatched pairs. 18660 records in RAM.
INFO 2026-06-08 09:14:47 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr7:101,004,080
INFO 2026-06-08 09:14:47 MarkDuplicates Tracking 606721 as yet unmatched pairs. 15199 records in RAM.
INFO 2026-06-08 09:14:50 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 2s. Last read position: chr7:101,035,061
INFO 2026-06-08 09:14:50 MarkDuplicates Tracking 606525 as yet unmatched pairs. 15002 records in RAM.
INFO 2026-06-08 09:14:52 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 2s. Last read position: chr7:102,587,637
INFO 2026-06-08 09:14:52 MarkDuplicates Tracking 604576 as yet unmatched pairs. 13051 records in RAM.
INFO 2026-06-08 09:14:54 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 2s. Last read position: chr7:108,001,617
INFO 2026-06-08 09:14:54 MarkDuplicates Tracking 603633 as yet unmatched pairs. 12097 records in RAM.
INFO 2026-06-08 09:14:56 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 2s. Last read position: chr7:117,536,652
INFO 2026-06-08 09:14:56 MarkDuplicates Tracking 604214 as yet unmatched pairs. 12672 records in RAM.
INFO 2026-06-08 09:14:58 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 2s. Last read position: chr7:127,929,298
INFO 2026-06-08 09:14:58 MarkDuplicates Tracking 602856 as yet unmatched pairs. 11314 records in RAM.
INFO 2026-06-08 09:15:00 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 2s. Last read position: chr7:133,275,015
INFO 2026-06-08 09:15:00 MarkDuplicates Tracking 599311 as yet unmatched pairs. 7757 records in RAM.
INFO 2026-06-08 09:15:02 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr7:139,962,021
INFO 2026-06-08 09:15:02 MarkDuplicates Tracking 598365 as yet unmatched pairs. 6800 records in RAM.
INFO 2026-06-08 09:15:05 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 2s. Last read position: chr7:143,810,214
INFO 2026-06-08 09:15:05 MarkDuplicates Tracking 595989 as yet unmatched pairs. 4415 records in RAM.
INFO 2026-06-08 09:16:13 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 68s. Last read position: chr7:150,371,925
INFO 2026-06-08 09:16:13 MarkDuplicates Tracking 595154 as yet unmatched pairs. 3563 records in RAM.
INFO 2026-06-08 09:16:15 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 2s. Last read position: chr7:152,163,522
INFO 2026-06-08 09:16:15 MarkDuplicates Tracking 592808 as yet unmatched pairs. 1206 records in RAM.
INFO 2026-06-08 09:16:17 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 2s. Last read position: chr8:10,054,624
INFO 2026-06-08 09:16:17 MarkDuplicates Tracking 591590 as yet unmatched pairs. 39849 records in RAM.
INFO 2026-06-08 09:16:19 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr8:22,412,054
INFO 2026-06-08 09:16:19 MarkDuplicates Tracking 590451 as yet unmatched pairs. 38706 records in RAM.
INFO 2026-06-08 09:16:21 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr8:29,191,032
INFO 2026-06-08 09:16:21 MarkDuplicates Tracking 588298 as yet unmatched pairs. 36551 records in RAM.
INFO 2026-06-08 09:16:22 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr8:38,267,279
INFO 2026-06-08 09:16:22 MarkDuplicates Tracking 586870 as yet unmatched pairs. 35122 records in RAM.
INFO 2026-06-08 09:16:24 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr8:42,331,231
INFO 2026-06-08 09:16:24 MarkDuplicates Tracking 585397 as yet unmatched pairs. 33648 records in RAM.
INFO 2026-06-08 09:16:26 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr8:55,966,774
INFO 2026-06-08 09:16:26 MarkDuplicates Tracking 583931 as yet unmatched pairs. 32173 records in RAM.
INFO 2026-06-08 09:16:28 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 2s. Last read position: chr8:63,186,380
INFO 2026-06-08 09:16:28 MarkDuplicates Tracking 582576 as yet unmatched pairs. 30812 records in RAM.
INFO 2026-06-08 09:16:30 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 2s. Last read position: chr8:73,291,627
INFO 2026-06-08 09:16:30 MarkDuplicates Tracking 589624 as yet unmatched pairs. 37848 records in RAM.
INFO 2026-06-08 09:16:32 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr8:86,486,484
INFO 2026-06-08 09:16:32 MarkDuplicates Tracking 579904 as yet unmatched pairs. 28120 records in RAM.
INFO 2026-06-08 09:16:33 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr8:94,696,899
INFO 2026-06-08 09:16:33 MarkDuplicates Tracking 579335 as yet unmatched pairs. 27547 records in RAM.
INFO 2026-06-08 09:16:35 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr8:100,703,298
INFO 2026-06-08 09:16:35 MarkDuplicates Tracking 587463 as yet unmatched pairs. 35660 records in RAM.
INFO 2026-06-08 09:16:37 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr8:100,721,394
INFO 2026-06-08 09:16:37 MarkDuplicates Tracking 586471 as yet unmatched pairs. 34655 records in RAM.
INFO 2026-06-08 09:16:39 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr8:107,958,156
INFO 2026-06-08 09:16:39 MarkDuplicates Tracking 574831 as yet unmatched pairs. 23007 records in RAM.
INFO 2026-06-08 09:16:40 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr8:122,953,459
INFO 2026-06-08 09:16:40 MarkDuplicates Tracking 572603 as yet unmatched pairs. 20775 records in RAM.
INFO 2026-06-08 09:16:42 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr8:127,739,006
INFO 2026-06-08 09:16:42 MarkDuplicates Tracking 578261 as yet unmatched pairs. 26432 records in RAM.
INFO 2026-06-08 09:16:43 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr8:142,520,880
INFO 2026-06-08 09:16:43 MarkDuplicates Tracking 569235 as yet unmatched pairs. 17393 records in RAM.
INFO 2026-06-08 09:16:45 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr8:143,728,245
INFO 2026-06-08 09:16:45 MarkDuplicates Tracking 568310 as yet unmatched pairs. 16466 records in RAM.
INFO 2026-06-08 09:16:47 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,400
INFO 2026-06-08 09:16:47 MarkDuplicates Tracking 565908 as yet unmatched pairs. 14060 records in RAM.
INFO 2026-06-08 09:16:48 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,787
INFO 2026-06-08 09:16:48 MarkDuplicates Tracking 567868 as yet unmatched pairs. 16020 records in RAM.
INFO 2026-06-08 09:16:49 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,954
INFO 2026-06-08 09:16:49 MarkDuplicates Tracking 565947 as yet unmatched pairs. 14099 records in RAM.
INFO 2026-06-08 09:16:51 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,848
INFO 2026-06-08 09:16:51 MarkDuplicates Tracking 570619 as yet unmatched pairs. 18771 records in RAM.
INFO 2026-06-08 09:16:52 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,989
INFO 2026-06-08 09:16:52 MarkDuplicates Tracking 571862 as yet unmatched pairs. 20005 records in RAM.
INFO 2026-06-08 09:16:54 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,098
INFO 2026-06-08 09:16:54 MarkDuplicates Tracking 562482 as yet unmatched pairs. 10620 records in RAM.
INFO 2026-06-08 09:16:55 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,393
INFO 2026-06-08 09:16:55 MarkDuplicates Tracking 563769 as yet unmatched pairs. 11906 records in RAM.
INFO 2026-06-08 09:16:56 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 0s. Last read position: chr8:143,866,375
INFO 2026-06-08 09:16:56 MarkDuplicates Tracking 561941 as yet unmatched pairs. 10078 records in RAM.
INFO 2026-06-08 09:16:58 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr8:143,916,349
INFO 2026-06-08 09:16:58 MarkDuplicates Tracking 561133 as yet unmatched pairs. 9270 records in RAM.
INFO 2026-06-08 09:17:00 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 2s. Last read position: chr8:143,925,250
INFO 2026-06-08 09:17:00 MarkDuplicates Tracking 557985 as yet unmatched pairs. 6121 records in RAM.
INFO 2026-06-08 09:17:03 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 2s. Last read position: chr8:144,106,578
INFO 2026-06-08 09:17:03 MarkDuplicates Tracking 555956 as yet unmatched pairs. 4088 records in RAM.
INFO 2026-06-08 09:17:05 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 2s. Last read position: chr8:144,472,701
INFO 2026-06-08 09:17:05 MarkDuplicates Tracking 553716 as yet unmatched pairs. 1847 records in RAM.
INFO 2026-06-08 09:17:07 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 2s. Last read position: chr9:2,076,228
INFO 2026-06-08 09:17:07 MarkDuplicates Tracking 551648 as yet unmatched pairs. 33851 records in RAM.
INFO 2026-06-08 09:17:09 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr9:19,050,352
INFO 2026-06-08 09:17:09 MarkDuplicates Tracking 550810 as yet unmatched pairs. 32993 records in RAM.
INFO 2026-06-08 09:17:11 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 2s. Last read position: chr9:33,271,151
INFO 2026-06-08 09:17:11 MarkDuplicates Tracking 549127 as yet unmatched pairs. 31310 records in RAM.
INFO 2026-06-08 09:17:13 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr9:35,231,200
INFO 2026-06-08 09:17:13 MarkDuplicates Tracking 547488 as yet unmatched pairs. 29664 records in RAM.
INFO 2026-06-08 09:17:15 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 2s. Last read position: chr9:37,015,003
INFO 2026-06-08 09:17:15 MarkDuplicates Tracking 545284 as yet unmatched pairs. 27451 records in RAM.
INFO 2026-06-08 09:17:17 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 2s. Last read position: chr9:71,745,457
INFO 2026-06-08 09:17:17 MarkDuplicates Tracking 544906 as yet unmatched pairs. 27065 records in RAM.
INFO 2026-06-08 09:17:19 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr9:83,970,794
INFO 2026-06-08 09:17:19 MarkDuplicates Tracking 545311 as yet unmatched pairs. 27468 records in RAM.
INFO 2026-06-08 09:17:21 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr9:92,242,240
INFO 2026-06-08 09:17:21 MarkDuplicates Tracking 542102 as yet unmatched pairs. 24251 records in RAM.
INFO 2026-06-08 09:17:22 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr9:95,478,185
INFO 2026-06-08 09:17:22 MarkDuplicates Tracking 539596 as yet unmatched pairs. 21727 records in RAM.
INFO 2026-06-08 09:17:24 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr9:104,825,766
INFO 2026-06-08 09:17:24 MarkDuplicates Tracking 538294 as yet unmatched pairs. 20419 records in RAM.
INFO 2026-06-08 09:17:26 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr9:110,411,011
INFO 2026-06-08 09:17:26 MarkDuplicates Tracking 536334 as yet unmatched pairs. 18450 records in RAM.
INFO 2026-06-08 09:17:27 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr9:115,084,415
INFO 2026-06-08 09:17:27 MarkDuplicates Tracking 535026 as yet unmatched pairs. 17139 records in RAM.
INFO 2026-06-08 09:17:29 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr9:123,128,249
INFO 2026-06-08 09:17:29 MarkDuplicates Tracking 533368 as yet unmatched pairs. 15470 records in RAM.
INFO 2026-06-08 09:17:31 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr9:127,479,949
INFO 2026-06-08 09:17:31 MarkDuplicates Tracking 531837 as yet unmatched pairs. 13933 records in RAM.
INFO 2026-06-08 09:17:33 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr9:128,151,967
INFO 2026-06-08 09:17:33 MarkDuplicates Tracking 545538 as yet unmatched pairs. 27633 records in RAM.
INFO 2026-06-08 09:17:35 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 2s. Last read position: chr9:128,621,153
INFO 2026-06-08 09:17:35 MarkDuplicates Tracking 529586 as yet unmatched pairs. 11679 records in RAM.
INFO 2026-06-08 09:17:37 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr9:130,374,502
INFO 2026-06-08 09:17:37 MarkDuplicates Tracking 527090 as yet unmatched pairs. 9183 records in RAM.
INFO 2026-06-08 09:17:38 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr9:131,530,511
INFO 2026-06-08 09:17:38 MarkDuplicates Tracking 525628 as yet unmatched pairs. 7713 records in RAM.
INFO 2026-06-08 09:17:40 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr9:133,783,572
INFO 2026-06-08 09:17:40 MarkDuplicates Tracking 524205 as yet unmatched pairs. 6277 records in RAM.
INFO 2026-06-08 09:17:42 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr9:136,500,752
INFO 2026-06-08 09:17:42 MarkDuplicates Tracking 522602 as yet unmatched pairs. 4671 records in RAM.
INFO 2026-06-08 09:17:43 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr9:137,101,555
INFO 2026-06-08 09:17:43 MarkDuplicates Tracking 520512 as yet unmatched pairs. 2577 records in RAM.
INFO 2026-06-08 09:17:46 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 2s. Last read position: chr9:137,614,826
INFO 2026-06-08 09:17:46 MarkDuplicates Tracking 518728 as yet unmatched pairs. 790 records in RAM.
INFO 2026-06-08 09:17:48 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr10:5,748,661
INFO 2026-06-08 09:17:48 MarkDuplicates Tracking 516715 as yet unmatched pairs. 28089 records in RAM.
INFO 2026-06-08 09:17:49 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr10:16,764,501
INFO 2026-06-08 09:17:49 MarkDuplicates Tracking 515501 as yet unmatched pairs. 26867 records in RAM.
INFO 2026-06-08 09:17:51 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr10:28,616,240
INFO 2026-06-08 09:17:51 MarkDuplicates Tracking 514269 as yet unmatched pairs. 25630 records in RAM.
INFO 2026-06-08 09:17:52 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr10:32,901,312
INFO 2026-06-08 09:17:52 MarkDuplicates Tracking 512476 as yet unmatched pairs. 23833 records in RAM.
INFO 2026-06-08 09:17:54 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr10:45,827,146
INFO 2026-06-08 09:17:54 MarkDuplicates Tracking 510969 as yet unmatched pairs. 22320 records in RAM.
INFO 2026-06-08 09:17:56 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr10:59,906,132
INFO 2026-06-08 09:17:56 MarkDuplicates Tracking 511161 as yet unmatched pairs. 22507 records in RAM.
INFO 2026-06-08 09:17:58 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr10:70,153,955
INFO 2026-06-08 09:17:58 MarkDuplicates Tracking 509662 as yet unmatched pairs. 21000 records in RAM.
INFO 2026-06-08 09:17:59 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr10:73,682,724
INFO 2026-06-08 09:17:59 MarkDuplicates Tracking 506958 as yet unmatched pairs. 18283 records in RAM.
INFO 2026-06-08 09:18:02 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 2s. Last read position: chr10:78,037,263
INFO 2026-06-08 09:18:02 MarkDuplicates Tracking 505690 as yet unmatched pairs. 17013 records in RAM.
INFO 2026-06-08 09:18:04 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr10:87,965,953
INFO 2026-06-08 09:18:04 MarkDuplicates Tracking 504339 as yet unmatched pairs. 15648 records in RAM.
INFO 2026-06-08 09:18:05 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr10:95,271,739
INFO 2026-06-08 09:18:05 MarkDuplicates Tracking 503836 as yet unmatched pairs. 15135 records in RAM.
INFO 2026-06-08 09:18:07 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr10:99,930,186
INFO 2026-06-08 09:18:07 MarkDuplicates Tracking 501037 as yet unmatched pairs. 12328 records in RAM.
INFO 2026-06-08 09:18:09 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr10:103,077,168
INFO 2026-06-08 09:18:09 MarkDuplicates Tracking 498780 as yet unmatched pairs. 10064 records in RAM.
INFO 2026-06-08 09:18:10 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr10:110,100,623
INFO 2026-06-08 09:18:10 MarkDuplicates Tracking 497736 as yet unmatched pairs. 9017 records in RAM.
INFO 2026-06-08 09:18:12 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr10:114,437,906
INFO 2026-06-08 09:18:12 MarkDuplicates Tracking 496937 as yet unmatched pairs. 8207 records in RAM.
INFO 2026-06-08 09:18:14 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr10:119,904,088
INFO 2026-06-08 09:18:14 MarkDuplicates Tracking 494215 as yet unmatched pairs. 5484 records in RAM.
INFO 2026-06-08 09:18:15 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr10:122,582,696
INFO 2026-06-08 09:18:15 MarkDuplicates Tracking 498710 as yet unmatched pairs. 9976 records in RAM.
INFO 2026-06-08 09:18:17 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr10:122,599,001
INFO 2026-06-08 09:18:17 MarkDuplicates Tracking 498019 as yet unmatched pairs. 9285 records in RAM.
INFO 2026-06-08 09:18:18 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr10:122,632,868
INFO 2026-06-08 09:18:18 MarkDuplicates Tracking 494315 as yet unmatched pairs. 5581 records in RAM.
INFO 2026-06-08 09:18:20 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr10:128,108,809
INFO 2026-06-08 09:18:20 MarkDuplicates Tracking 489991 as yet unmatched pairs. 1254 records in RAM.
INFO 2026-06-08 09:18:23 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 2s. Last read position: chr11:320,684
INFO 2026-06-08 09:18:23 MarkDuplicates Tracking 490414 as yet unmatched pairs. 80975 records in RAM.
INFO 2026-06-08 09:18:25 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr11:747,484
INFO 2026-06-08 09:18:25 MarkDuplicates Tracking 486770 as yet unmatched pairs. 77330 records in RAM.
INFO 2026-06-08 09:18:27 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 2s. Last read position: chr11:1,082,904
INFO 2026-06-08 09:18:27 MarkDuplicates Tracking 487481 as yet unmatched pairs. 78033 records in RAM.
INFO 2026-06-08 09:18:29 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr11:1,164,259
INFO 2026-06-08 09:18:29 MarkDuplicates Tracking 490355 as yet unmatched pairs. 80906 records in RAM.
INFO 2026-06-08 09:18:30 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr11:1,178,661
INFO 2026-06-08 09:18:30 MarkDuplicates Tracking 493526 as yet unmatched pairs. 84071 records in RAM.
INFO 2026-06-08 09:18:32 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr11:1,183,134
INFO 2026-06-08 09:18:32 MarkDuplicates Tracking 482257 as yet unmatched pairs. 72798 records in RAM.
INFO 2026-06-08 09:18:33 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr11:1,184,176
INFO 2026-06-08 09:18:33 MarkDuplicates Tracking 486036 as yet unmatched pairs. 76577 records in RAM.
INFO 2026-06-08 09:18:35 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr11:1,184,830
INFO 2026-06-08 09:18:35 MarkDuplicates Tracking 478620 as yet unmatched pairs. 69157 records in RAM.
INFO 2026-06-08 09:18:36 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr11:1,188,084
INFO 2026-06-08 09:18:36 MarkDuplicates Tracking 490288 as yet unmatched pairs. 80825 records in RAM.
INFO 2026-06-08 09:18:38 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr11:1,190,155
INFO 2026-06-08 09:18:38 MarkDuplicates Tracking 490405 as yet unmatched pairs. 80938 records in RAM.
INFO 2026-06-08 09:18:39 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr11:1,191,855
INFO 2026-06-08 09:18:39 MarkDuplicates Tracking 477851 as yet unmatched pairs. 68384 records in RAM.
INFO 2026-06-08 09:18:41 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr11:1,195,873
INFO 2026-06-08 09:18:41 MarkDuplicates Tracking 477508 as yet unmatched pairs. 68036 records in RAM.
INFO 2026-06-08 09:18:43 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr11:1,226,850
INFO 2026-06-08 09:18:43 MarkDuplicates Tracking 477387 as yet unmatched pairs. 67910 records in RAM.
INFO 2026-06-08 09:18:45 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr11:1,240,891
INFO 2026-06-08 09:18:45 MarkDuplicates Tracking 474671 as yet unmatched pairs. 65194 records in RAM.
INFO 2026-06-08 09:18:46 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,213
INFO 2026-06-08 09:18:46 MarkDuplicates Tracking 468888 as yet unmatched pairs. 59408 records in RAM.
INFO 2026-06-08 09:18:48 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr11:1,244,048
INFO 2026-06-08 09:18:48 MarkDuplicates Tracking 473966 as yet unmatched pairs. 64486 records in RAM.
INFO 2026-06-08 09:18:49 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr11:1,245,197
INFO 2026-06-08 09:18:49 MarkDuplicates Tracking 468509 as yet unmatched pairs. 59026 records in RAM.
INFO 2026-06-08 09:18:50 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr11:1,246,853
INFO 2026-06-08 09:18:50 MarkDuplicates Tracking 471880 as yet unmatched pairs. 62397 records in RAM.
INFO 2026-06-08 09:18:52 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,831
INFO 2026-06-08 09:18:52 MarkDuplicates Tracking 473575 as yet unmatched pairs. 64091 records in RAM.
INFO 2026-06-08 09:18:54 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr11:1,249,063
INFO 2026-06-08 09:18:54 MarkDuplicates Tracking 468626 as yet unmatched pairs. 59142 records in RAM.
INFO 2026-06-08 09:18:55 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr11:1,250,475
INFO 2026-06-08 09:18:55 MarkDuplicates Tracking 464490 as yet unmatched pairs. 54999 records in RAM.
INFO 2026-06-08 09:18:57 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr11:1,257,601
INFO 2026-06-08 09:18:57 MarkDuplicates Tracking 468184 as yet unmatched pairs. 58693 records in RAM.
INFO 2026-06-08 09:18:59 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr11:2,445,314
INFO 2026-06-08 09:18:59 MarkDuplicates Tracking 460546 as yet unmatched pairs. 51055 records in RAM.
INFO 2026-06-08 09:19:00 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr11:6,480,394
INFO 2026-06-08 09:19:00 MarkDuplicates Tracking 458270 as yet unmatched pairs. 48775 records in RAM.
INFO 2026-06-08 09:19:02 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr11:9,789,239
INFO 2026-06-08 09:19:02 MarkDuplicates Tracking 456815 as yet unmatched pairs. 47315 records in RAM.
INFO 2026-06-08 09:19:04 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr11:14,079,982
INFO 2026-06-08 09:19:04 MarkDuplicates Tracking 457278 as yet unmatched pairs. 47770 records in RAM.
INFO 2026-06-08 09:19:05 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr11:18,269,769
INFO 2026-06-08 09:19:05 MarkDuplicates Tracking 453941 as yet unmatched pairs. 44425 records in RAM.
INFO 2026-06-08 09:19:07 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr11:32,927,156
INFO 2026-06-08 09:19:07 MarkDuplicates Tracking 452555 as yet unmatched pairs. 43037 records in RAM.
INFO 2026-06-08 09:19:09 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr11:35,229,209
INFO 2026-06-08 09:19:09 MarkDuplicates Tracking 453847 as yet unmatched pairs. 44325 records in RAM.
INFO 2026-06-08 09:19:11 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 2s. Last read position: chr11:46,320,448
INFO 2026-06-08 09:19:11 MarkDuplicates Tracking 454033 as yet unmatched pairs. 44501 records in RAM.
INFO 2026-06-08 09:19:13 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr11:47,487,238
INFO 2026-06-08 09:19:13 MarkDuplicates Tracking 448239 as yet unmatched pairs. 38699 records in RAM.
INFO 2026-06-08 09:19:15 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr11:57,801,920
INFO 2026-06-08 09:19:15 MarkDuplicates Tracking 450137 as yet unmatched pairs. 40587 records in RAM.
INFO 2026-06-08 09:19:16 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr11:60,937,249
INFO 2026-06-08 09:19:16 MarkDuplicates Tracking 445078 as yet unmatched pairs. 35528 records in RAM.
INFO 2026-06-08 09:19:18 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr11:62,517,257
INFO 2026-06-08 09:19:18 MarkDuplicates Tracking 446300 as yet unmatched pairs. 36741 records in RAM.
INFO 2026-06-08 09:19:20 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr11:62,523,738
INFO 2026-06-08 09:19:20 MarkDuplicates Tracking 444919 as yet unmatched pairs. 35357 records in RAM.
INFO 2026-06-08 09:19:21 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr11:62,529,645
INFO 2026-06-08 09:19:21 MarkDuplicates Tracking 443763 as yet unmatched pairs. 34179 records in RAM.
INFO 2026-06-08 09:19:23 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr11:62,575,806
INFO 2026-06-08 09:19:23 MarkDuplicates Tracking 439873 as yet unmatched pairs. 30289 records in RAM.
INFO 2026-06-08 09:19:25 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr11:63,750,099
INFO 2026-06-08 09:19:25 MarkDuplicates Tracking 440147 as yet unmatched pairs. 30558 records in RAM.
INFO 2026-06-08 09:19:27 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr11:64,344,980
INFO 2026-06-08 09:19:27 MarkDuplicates Tracking 436274 as yet unmatched pairs. 26683 records in RAM.
INFO 2026-06-08 09:19:29 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 2s. Last read position: chr11:65,132,259
INFO 2026-06-08 09:19:29 MarkDuplicates Tracking 434933 as yet unmatched pairs. 25329 records in RAM.
INFO 2026-06-08 09:19:31 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr11:65,658,718
INFO 2026-06-08 09:19:31 MarkDuplicates Tracking 434896 as yet unmatched pairs. 25273 records in RAM.
INFO 2026-06-08 09:19:32 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr11:66,366,425
INFO 2026-06-08 09:19:32 MarkDuplicates Tracking 431247 as yet unmatched pairs. 21601 records in RAM.
INFO 2026-06-08 09:19:34 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr11:67,353,015
INFO 2026-06-08 09:19:34 MarkDuplicates Tracking 430834 as yet unmatched pairs. 21177 records in RAM.
INFO 2026-06-08 09:19:36 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr11:68,044,262
INFO 2026-06-08 09:19:36 MarkDuplicates Tracking 427732 as yet unmatched pairs. 18072 records in RAM.
INFO 2026-06-08 09:19:37 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr11:70,335,592
INFO 2026-06-08 09:19:37 MarkDuplicates Tracking 425597 as yet unmatched pairs. 15923 records in RAM.
INFO 2026-06-08 09:19:39 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr11:72,710,397
INFO 2026-06-08 09:19:39 MarkDuplicates Tracking 424197 as yet unmatched pairs. 14521 records in RAM.
INFO 2026-06-08 09:19:41 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr11:76,351,290
INFO 2026-06-08 09:19:41 MarkDuplicates Tracking 422324 as yet unmatched pairs. 12646 records in RAM.
INFO 2026-06-08 09:19:42 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr11:85,734,659
INFO 2026-06-08 09:19:42 MarkDuplicates Tracking 421325 as yet unmatched pairs. 11646 records in RAM.
INFO 2026-06-08 09:19:44 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr11:102,865,930
INFO 2026-06-08 09:19:44 MarkDuplicates Tracking 420129 as yet unmatched pairs. 10450 records in RAM.
INFO 2026-06-08 09:19:45 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr11:117,344,193
INFO 2026-06-08 09:19:45 MarkDuplicates Tracking 417734 as yet unmatched pairs. 8035 records in RAM.
INFO 2026-06-08 09:19:47 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr11:119,019,148
INFO 2026-06-08 09:19:47 MarkDuplicates Tracking 417118 as yet unmatched pairs. 7414 records in RAM.
INFO 2026-06-08 09:19:49 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr11:121,532,470
INFO 2026-06-08 09:19:49 MarkDuplicates Tracking 414514 as yet unmatched pairs. 4809 records in RAM.
INFO 2026-06-08 09:19:51 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr11:124,748,698
INFO 2026-06-08 09:19:51 MarkDuplicates Tracking 414505 as yet unmatched pairs. 4800 records in RAM.
INFO 2026-06-08 09:19:53 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr11:129,854,611
INFO 2026-06-08 09:19:53 MarkDuplicates Tracking 413085 as yet unmatched pairs. 3378 records in RAM.
INFO 2026-06-08 09:19:55 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 2s. Last read position: chr12:323,743
INFO 2026-06-08 09:19:55 MarkDuplicates Tracking 410168 as yet unmatched pairs. 48070 records in RAM.
INFO 2026-06-08 09:19:57 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr12:6,225,432
INFO 2026-06-08 09:19:57 MarkDuplicates Tracking 412832 as yet unmatched pairs. 50717 records in RAM.
INFO 2026-06-08 09:19:59 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr12:6,591,526
INFO 2026-06-08 09:19:59 MarkDuplicates Tracking 407288 as yet unmatched pairs. 45172 records in RAM.
INFO 2026-06-08 09:20:00 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr12:7,070,275
INFO 2026-06-08 09:20:00 MarkDuplicates Tracking 405248 as yet unmatched pairs. 43132 records in RAM.
INFO 2026-06-08 09:20:02 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr12:12,823,306
INFO 2026-06-08 09:20:02 MarkDuplicates Tracking 403831 as yet unmatched pairs. 41703 records in RAM.
INFO 2026-06-08 09:20:04 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr12:15,883,577
INFO 2026-06-08 09:20:04 MarkDuplicates Tracking 403226 as yet unmatched pairs. 41096 records in RAM.
INFO 2026-06-08 09:20:05 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr12:29,371,549
INFO 2026-06-08 09:20:05 MarkDuplicates Tracking 400917 as yet unmatched pairs. 38778 records in RAM.
INFO 2026-06-08 09:20:07 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr12:45,851,075
INFO 2026-06-08 09:20:07 MarkDuplicates Tracking 399566 as yet unmatched pairs. 37418 records in RAM.
INFO 2026-06-08 09:20:09 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr12:49,034,192
INFO 2026-06-08 09:20:09 MarkDuplicates Tracking 398474 as yet unmatched pairs. 36318 records in RAM.
INFO 2026-06-08 09:20:10 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr12:49,563,072
INFO 2026-06-08 09:20:10 MarkDuplicates Tracking 397164 as yet unmatched pairs. 35007 records in RAM.
INFO 2026-06-08 09:20:12 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr12:51,240,992
INFO 2026-06-08 09:20:12 MarkDuplicates Tracking 398006 as yet unmatched pairs. 35844 records in RAM.
INFO 2026-06-08 09:20:14 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 2s. Last read position: chr12:52,904,915
INFO 2026-06-08 09:20:14 MarkDuplicates Tracking 393619 as yet unmatched pairs. 31452 records in RAM.
INFO 2026-06-08 09:20:16 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 2s. Last read position: chr12:53,383,026
INFO 2026-06-08 09:20:16 MarkDuplicates Tracking 392488 as yet unmatched pairs. 30317 records in RAM.
INFO 2026-06-08 09:20:18 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr12:54,282,449
INFO 2026-06-08 09:20:18 MarkDuplicates Tracking 393165 as yet unmatched pairs. 30989 records in RAM.
INFO 2026-06-08 09:20:20 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr12:56,087,878
INFO 2026-06-08 09:20:20 MarkDuplicates Tracking 391359 as yet unmatched pairs. 29181 records in RAM.
INFO 2026-06-08 09:20:22 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr12:56,275,115
INFO 2026-06-08 09:20:22 MarkDuplicates Tracking 388745 as yet unmatched pairs. 26566 records in RAM.
INFO 2026-06-08 09:20:23 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr12:56,713,650
INFO 2026-06-08 09:20:23 MarkDuplicates Tracking 394724 as yet unmatched pairs. 32543 records in RAM.
INFO 2026-06-08 09:20:25 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr12:57,166,128
INFO 2026-06-08 09:20:25 MarkDuplicates Tracking 386301 as yet unmatched pairs. 24120 records in RAM.
INFO 2026-06-08 09:20:26 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr12:57,696,320
INFO 2026-06-08 09:20:26 MarkDuplicates Tracking 384259 as yet unmatched pairs. 22077 records in RAM.
INFO 2026-06-08 09:20:28 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr12:66,154,550
INFO 2026-06-08 09:20:28 MarkDuplicates Tracking 382179 as yet unmatched pairs. 19989 records in RAM.
INFO 2026-06-08 09:20:30 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr12:69,587,567
INFO 2026-06-08 09:20:30 MarkDuplicates Tracking 382708 as yet unmatched pairs. 20515 records in RAM.
INFO 2026-06-08 09:20:32 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr12:75,480,869
INFO 2026-06-08 09:20:32 MarkDuplicates Tracking 379324 as yet unmatched pairs. 17122 records in RAM.
INFO 2026-06-08 09:20:33 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr12:93,378,357
INFO 2026-06-08 09:20:33 MarkDuplicates Tracking 379124 as yet unmatched pairs. 16911 records in RAM.
INFO 2026-06-08 09:20:35 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr12:101,402,868
INFO 2026-06-08 09:20:35 MarkDuplicates Tracking 377273 as yet unmatched pairs. 15049 records in RAM.
INFO 2026-06-08 09:20:37 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr12:105,138,003
INFO 2026-06-08 09:20:37 MarkDuplicates Tracking 375433 as yet unmatched pairs. 13206 records in RAM.
INFO 2026-06-08 09:20:38 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr12:110,339,684
INFO 2026-06-08 09:20:38 MarkDuplicates Tracking 374780 as yet unmatched pairs. 12550 records in RAM.
INFO 2026-06-08 09:20:40 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr12:112,270,368
INFO 2026-06-08 09:20:40 MarkDuplicates Tracking 372164 as yet unmatched pairs. 9932 records in RAM.
INFO 2026-06-08 09:20:43 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 2s. Last read position: chr12:116,723,077
INFO 2026-06-08 09:20:43 MarkDuplicates Tracking 370533 as yet unmatched pairs. 8296 records in RAM.
INFO 2026-06-08 09:20:45 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr12:120,212,475
INFO 2026-06-08 09:20:45 MarkDuplicates Tracking 369457 as yet unmatched pairs. 7195 records in RAM.
INFO 2026-06-08 09:20:47 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr12:122,127,296
INFO 2026-06-08 09:20:47 MarkDuplicates Tracking 368448 as yet unmatched pairs. 6177 records in RAM.
INFO 2026-06-08 09:20:48 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr12:123,737,059
INFO 2026-06-08 09:20:48 MarkDuplicates Tracking 365517 as yet unmatched pairs. 3242 records in RAM.
INFO 2026-06-08 09:20:50 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr12:131,941,808
INFO 2026-06-08 09:20:50 MarkDuplicates Tracking 363947 as yet unmatched pairs. 1672 records in RAM.
INFO 2026-06-08 09:20:52 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr13:20,051,583
INFO 2026-06-08 09:20:52 MarkDuplicates Tracking 363013 as yet unmatched pairs. 17108 records in RAM.
INFO 2026-06-08 09:20:53 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr13:27,255,318
INFO 2026-06-08 09:20:53 MarkDuplicates Tracking 363557 as yet unmatched pairs. 17651 records in RAM.
INFO 2026-06-08 09:20:55 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr13:39,042,121
INFO 2026-06-08 09:20:55 MarkDuplicates Tracking 359422 as yet unmatched pairs. 13513 records in RAM.
INFO 2026-06-08 09:20:57 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr13:45,975,791
INFO 2026-06-08 09:20:57 MarkDuplicates Tracking 357732 as yet unmatched pairs. 11822 records in RAM.
INFO 2026-06-08 09:20:58 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr13:52,659,213
INFO 2026-06-08 09:20:58 MarkDuplicates Tracking 356833 as yet unmatched pairs. 10918 records in RAM.
INFO 2026-06-08 09:21:00 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr13:53,041,943
INFO 2026-06-08 09:21:00 MarkDuplicates Tracking 392774 as yet unmatched pairs. 46855 records in RAM.
INFO 2026-06-08 09:21:02 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr13:53,050,110
INFO 2026-06-08 09:21:02 MarkDuplicates Tracking 402226 as yet unmatched pairs. 56305 records in RAM.
INFO 2026-06-08 09:21:04 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr13:53,050,499
INFO 2026-06-08 09:21:04 MarkDuplicates Tracking 395569 as yet unmatched pairs. 49647 records in RAM.
INFO 2026-06-08 09:21:05 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr13:75,560,785
INFO 2026-06-08 09:21:05 MarkDuplicates Tracking 352040 as yet unmatched pairs. 6110 records in RAM.
INFO 2026-06-08 09:21:07 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr13:98,475,250
INFO 2026-06-08 09:21:07 MarkDuplicates Tracking 350682 as yet unmatched pairs. 4751 records in RAM.
INFO 2026-06-08 09:21:10 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 2s. Last read position: chr13:110,201,484
INFO 2026-06-08 09:21:10 MarkDuplicates Tracking 348251 as yet unmatched pairs. 2318 records in RAM.
INFO 2026-06-08 09:21:11 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr13:114,250,562
INFO 2026-06-08 09:21:11 MarkDuplicates Tracking 346339 as yet unmatched pairs. 397 records in RAM.
INFO 2026-06-08 09:21:13 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr14:21,368,268
INFO 2026-06-08 09:21:13 MarkDuplicates Tracking 345142 as yet unmatched pairs. 30346 records in RAM.
INFO 2026-06-08 09:21:15 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr14:23,061,410
INFO 2026-06-08 09:21:15 MarkDuplicates Tracking 343108 as yet unmatched pairs. 28309 records in RAM.
INFO 2026-06-08 09:21:17 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 2s. Last read position: chr14:24,192,953
INFO 2026-06-08 09:21:17 MarkDuplicates Tracking 341724 as yet unmatched pairs. 26925 records in RAM.
INFO 2026-06-08 09:21:19 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr14:32,092,584
INFO 2026-06-08 09:21:19 MarkDuplicates Tracking 340588 as yet unmatched pairs. 25789 records in RAM.
INFO 2026-06-08 09:21:21 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr14:49,583,640
INFO 2026-06-08 09:21:21 MarkDuplicates Tracking 348635 as yet unmatched pairs. 33826 records in RAM.
INFO 2026-06-08 09:21:23 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr14:53,950,809
INFO 2026-06-08 09:21:23 MarkDuplicates Tracking 337123 as yet unmatched pairs. 22305 records in RAM.
INFO 2026-06-08 09:21:24 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr14:58,234,389
INFO 2026-06-08 09:21:24 MarkDuplicates Tracking 335491 as yet unmatched pairs. 20672 records in RAM.
INFO 2026-06-08 09:21:26 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 2s. Last read position: chr14:64,174,990
INFO 2026-06-08 09:21:26 MarkDuplicates Tracking 334528 as yet unmatched pairs. 19708 records in RAM.
INFO 2026-06-08 09:21:28 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr14:68,789,712
INFO 2026-06-08 09:21:28 MarkDuplicates Tracking 333064 as yet unmatched pairs. 18237 records in RAM.
INFO 2026-06-08 09:21:30 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr14:73,277,239
INFO 2026-06-08 09:21:30 MarkDuplicates Tracking 331302 as yet unmatched pairs. 16462 records in RAM.
INFO 2026-06-08 09:21:31 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr14:75,783,362
INFO 2026-06-08 09:21:31 MarkDuplicates Tracking 329428 as yet unmatched pairs. 14579 records in RAM.
INFO 2026-06-08 09:21:33 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr14:91,683,888
INFO 2026-06-08 09:21:33 MarkDuplicates Tracking 327912 as yet unmatched pairs. 13057 records in RAM.
INFO 2026-06-08 09:21:35 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr14:94,727,124
INFO 2026-06-08 09:21:35 MarkDuplicates Tracking 326186 as yet unmatched pairs. 11331 records in RAM.
INFO 2026-06-08 09:21:36 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr14:101,986,709
INFO 2026-06-08 09:21:36 MarkDuplicates Tracking 325215 as yet unmatched pairs. 10359 records in RAM.
INFO 2026-06-08 09:21:38 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr14:102,923,774
INFO 2026-06-08 09:21:38 MarkDuplicates Tracking 324953 as yet unmatched pairs. 10096 records in RAM.
INFO 2026-06-08 09:21:40 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 2s. Last read position: chr14:103,757,744
INFO 2026-06-08 09:21:40 MarkDuplicates Tracking 321141 as yet unmatched pairs. 6282 records in RAM.
INFO 2026-06-08 09:21:42 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr14:104,947,504
INFO 2026-06-08 09:21:42 MarkDuplicates Tracking 319890 as yet unmatched pairs. 5020 records in RAM.
INFO 2026-06-08 09:21:43 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,133
INFO 2026-06-08 09:21:43 MarkDuplicates Tracking 320566 as yet unmatched pairs. 5696 records in RAM.
INFO 2026-06-08 09:21:45 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr14:105,708,606
INFO 2026-06-08 09:21:45 MarkDuplicates Tracking 317362 as yet unmatched pairs. 2491 records in RAM.
INFO 2026-06-08 09:21:46 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr14:106,335,322
INFO 2026-06-08 09:21:46 MarkDuplicates Tracking 315074 as yet unmatched pairs. 203 records in RAM.
INFO 2026-06-08 09:21:48 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr15:30,974,936
INFO 2026-06-08 09:21:48 MarkDuplicates Tracking 314017 as yet unmatched pairs. 29211 records in RAM.
INFO 2026-06-08 09:21:50 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr15:38,349,438
INFO 2026-06-08 09:21:50 MarkDuplicates Tracking 312673 as yet unmatched pairs. 27866 records in RAM.
INFO 2026-06-08 09:21:51 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr15:41,243,692
INFO 2026-06-08 09:21:51 MarkDuplicates Tracking 313417 as yet unmatched pairs. 28607 records in RAM.
INFO 2026-06-08 09:21:53 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr15:43,527,363
INFO 2026-06-08 09:21:53 MarkDuplicates Tracking 309174 as yet unmatched pairs. 24361 records in RAM.
INFO 2026-06-08 09:21:55 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr15:43,793,816
INFO 2026-06-08 09:21:55 MarkDuplicates Tracking 314035 as yet unmatched pairs. 29213 records in RAM.
INFO 2026-06-08 09:21:56 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 1s. Last read position: chr15:45,100,796
INFO 2026-06-08 09:21:56 MarkDuplicates Tracking 308915 as yet unmatched pairs. 24086 records in RAM.
INFO 2026-06-08 09:21:58 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr15:45,688,380
INFO 2026-06-08 09:21:58 MarkDuplicates Tracking 306116 as yet unmatched pairs. 21286 records in RAM.
INFO 2026-06-08 09:21:59 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr15:55,359,714
INFO 2026-06-08 09:21:59 MarkDuplicates Tracking 304071 as yet unmatched pairs. 19233 records in RAM.
INFO 2026-06-08 09:22:01 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 1s. Last read position: chr15:59,618,539
INFO 2026-06-08 09:22:01 MarkDuplicates Tracking 305714 as yet unmatched pairs. 20875 records in RAM.
INFO 2026-06-08 09:22:03 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr15:61,927,174
INFO 2026-06-08 09:22:03 MarkDuplicates Tracking 301371 as yet unmatched pairs. 16530 records in RAM.
INFO 2026-06-08 09:22:04 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 1s. Last read position: chr15:64,160,103
INFO 2026-06-08 09:22:04 MarkDuplicates Tracking 302953 as yet unmatched pairs. 18109 records in RAM.
INFO 2026-06-08 09:22:06 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 1s. Last read position: chr15:66,546,626
INFO 2026-06-08 09:22:06 MarkDuplicates Tracking 297581 as yet unmatched pairs. 12733 records in RAM.
INFO 2026-06-08 09:22:08 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 1s. Last read position: chr15:72,208,657
INFO 2026-06-08 09:22:08 MarkDuplicates Tracking 299929 as yet unmatched pairs. 15081 records in RAM.
INFO 2026-06-08 09:22:09 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 1s. Last read position: chr15:74,837,186
INFO 2026-06-08 09:22:09 MarkDuplicates Tracking 294537 as yet unmatched pairs. 9688 records in RAM.
INFO 2026-06-08 09:22:11 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr15:77,054,200
INFO 2026-06-08 09:22:11 MarkDuplicates Tracking 298812 as yet unmatched pairs. 13963 records in RAM.
INFO 2026-06-08 09:22:14 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 2s. Last read position: chr15:82,220,085
INFO 2026-06-08 09:22:14 MarkDuplicates Tracking 291000 as yet unmatched pairs. 6151 records in RAM.
INFO 2026-06-08 09:22:16 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 2s. Last read position: chr15:88,856,139
INFO 2026-06-08 09:22:16 MarkDuplicates Tracking 289559 as yet unmatched pairs. 4706 records in RAM.
INFO 2026-06-08 09:22:18 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 1s. Last read position: chr15:89,806,200
INFO 2026-06-08 09:22:18 MarkDuplicates Tracking 290391 as yet unmatched pairs. 5527 records in RAM.
INFO 2026-06-08 09:22:19 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 1s. Last read position: chr15:90,484,288
INFO 2026-06-08 09:22:19 MarkDuplicates Tracking 288629 as yet unmatched pairs. 3765 records in RAM.
INFO 2026-06-08 09:22:21 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 1s. Last read position: chr15:101,976,137
INFO 2026-06-08 09:22:21 MarkDuplicates Tracking 285065 as yet unmatched pairs. 194 records in RAM.
INFO 2026-06-08 09:22:23 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 2s. Last read position: chr16:681,208
INFO 2026-06-08 09:22:23 MarkDuplicates Tracking 283717 as yet unmatched pairs. 42215 records in RAM.
INFO 2026-06-08 09:22:25 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 1s. Last read position: chr16:1,788,021
INFO 2026-06-08 09:22:25 MarkDuplicates Tracking 282022 as yet unmatched pairs. 40517 records in RAM.
INFO 2026-06-08 09:22:27 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:57s. Time for last 1,000,000: 1s. Last read position: chr16:2,308,544
INFO 2026-06-08 09:22:27 MarkDuplicates Tracking 279185 as yet unmatched pairs. 37680 records in RAM.
INFO 2026-06-08 09:22:28 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 1s. Last read position: chr16:2,766,933
INFO 2026-06-08 09:22:28 MarkDuplicates Tracking 281182 as yet unmatched pairs. 39673 records in RAM.
INFO 2026-06-08 09:22:30 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:16:00s. Time for last 1,000,000: 1s. Last read position: chr16:3,519,842
INFO 2026-06-08 09:22:30 MarkDuplicates Tracking 275850 as yet unmatched pairs. 34339 records in RAM.
INFO 2026-06-08 09:22:31 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:16:02s. Time for last 1,000,000: 1s. Last read position: chr16:5,081,008
INFO 2026-06-08 09:22:31 MarkDuplicates Tracking 275343 as yet unmatched pairs. 33827 records in RAM.
INFO 2026-06-08 09:22:33 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:16:04s. Time for last 1,000,000: 1s. Last read position: chr16:14,690,597
INFO 2026-06-08 09:22:33 MarkDuplicates Tracking 272908 as yet unmatched pairs. 31388 records in RAM.
INFO 2026-06-08 09:22:35 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:16:05s. Time for last 1,000,000: 1s. Last read position: chr16:15,741,799
INFO 2026-06-08 09:22:35 MarkDuplicates Tracking 271985 as yet unmatched pairs. 30458 records in RAM.
INFO 2026-06-08 09:22:36 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:16:07s. Time for last 1,000,000: 1s. Last read position: chr16:18,382,659
INFO 2026-06-08 09:22:36 MarkDuplicates Tracking 271054 as yet unmatched pairs. 29527 records in RAM.
INFO 2026-06-08 09:22:38 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:16:08s. Time for last 1,000,000: 1s. Last read position: chr16:19,463,350
INFO 2026-06-08 09:22:38 MarkDuplicates Tracking 270549 as yet unmatched pairs. 29020 records in RAM.
INFO 2026-06-08 09:22:40 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:16:10s. Time for last 1,000,000: 1s. Last read position: chr16:21,835,818
INFO 2026-06-08 09:22:40 MarkDuplicates Tracking 270137 as yet unmatched pairs. 28606 records in RAM.
INFO 2026-06-08 09:22:41 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 1s. Last read position: chr16:23,068,569
INFO 2026-06-08 09:22:41 MarkDuplicates Tracking 268169 as yet unmatched pairs. 26638 records in RAM.
INFO 2026-06-08 09:22:44 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 2s. Last read position: chr16:28,380,737
INFO 2026-06-08 09:22:44 MarkDuplicates Tracking 268241 as yet unmatched pairs. 26710 records in RAM.
INFO 2026-06-08 09:22:45 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:16:16s. Time for last 1,000,000: 1s. Last read position: chr16:28,975,214
INFO 2026-06-08 09:22:45 MarkDuplicates Tracking 266152 as yet unmatched pairs. 24621 records in RAM.
INFO 2026-06-08 09:22:47 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:16:17s. Time for last 1,000,000: 1s. Last read position: chr16:29,830,666
INFO 2026-06-08 09:22:47 MarkDuplicates Tracking 266389 as yet unmatched pairs. 24856 records in RAM.
INFO 2026-06-08 09:22:48 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:16:19s. Time for last 1,000,000: 1s. Last read position: chr16:30,069,851
INFO 2026-06-08 09:22:48 MarkDuplicates Tracking 270379 as yet unmatched pairs. 28845 records in RAM.
INFO 2026-06-08 09:22:50 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:16:20s. Time for last 1,000,000: 1s. Last read position: chr16:30,444,599
INFO 2026-06-08 09:22:50 MarkDuplicates Tracking 262315 as yet unmatched pairs. 20781 records in RAM.
INFO 2026-06-08 09:22:51 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:16:22s. Time for last 1,000,000: 1s. Last read position: chr16:31,132,858
INFO 2026-06-08 09:22:51 MarkDuplicates Tracking 261775 as yet unmatched pairs. 20240 records in RAM.
INFO 2026-06-08 09:22:53 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:16:24s. Time for last 1,000,000: 1s. Last read position: chr16:48,361,522
INFO 2026-06-08 09:22:53 MarkDuplicates Tracking 258985 as yet unmatched pairs. 17450 records in RAM.
INFO 2026-06-08 09:22:55 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:16:25s. Time for last 1,000,000: 1s. Last read position: chr16:57,026,298
INFO 2026-06-08 09:22:55 MarkDuplicates Tracking 257198 as yet unmatched pairs. 15655 records in RAM.
INFO 2026-06-08 09:22:56 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:16:27s. Time for last 1,000,000: 1s. Last read position: chr16:58,716,081
INFO 2026-06-08 09:22:56 MarkDuplicates Tracking 256141 as yet unmatched pairs. 14594 records in RAM.
INFO 2026-06-08 09:22:58 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:16:29s. Time for last 1,000,000: 1s. Last read position: chr16:67,438,802
INFO 2026-06-08 09:22:58 MarkDuplicates Tracking 253938 as yet unmatched pairs. 12388 records in RAM.
INFO 2026-06-08 09:23:00 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:16:30s. Time for last 1,000,000: 1s. Last read position: chr16:68,819,320
INFO 2026-06-08 09:23:00 MarkDuplicates Tracking 254398 as yet unmatched pairs. 12841 records in RAM.
INFO 2026-06-08 09:23:01 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:16:32s. Time for last 1,000,000: 1s. Last read position: chr16:70,268,267
INFO 2026-06-08 09:23:01 MarkDuplicates Tracking 251193 as yet unmatched pairs. 9634 records in RAM.
INFO 2026-06-08 09:23:03 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:16:34s. Time for last 1,000,000: 2s. Last read position: chr16:74,391,911
INFO 2026-06-08 09:23:03 MarkDuplicates Tracking 249132 as yet unmatched pairs. 7573 records in RAM.
INFO 2026-06-08 09:23:05 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:16:36s. Time for last 1,000,000: 1s. Last read position: chr16:81,696,560
INFO 2026-06-08 09:23:05 MarkDuplicates Tracking 247527 as yet unmatched pairs. 5968 records in RAM.
INFO 2026-06-08 09:23:07 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:16:38s. Time for last 1,000,000: 1s. Last read position: chr16:87,765,791
INFO 2026-06-08 09:23:07 MarkDuplicates Tracking 245485 as yet unmatched pairs. 3924 records in RAM.
INFO 2026-06-08 09:23:09 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:16:40s. Time for last 1,000,000: 1s. Last read position: chr16:88,858,665
INFO 2026-06-08 09:23:09 MarkDuplicates Tracking 244550 as yet unmatched pairs. 2989 records in RAM.
INFO 2026-06-08 09:23:11 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:16:41s. Time for last 1,000,000: 1s. Last read position: chr16:89,911,145
INFO 2026-06-08 09:23:11 MarkDuplicates Tracking 242231 as yet unmatched pairs. 670 records in RAM.
INFO 2026-06-08 09:23:13 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:16:43s. Time for last 1,000,000: 2s. Last read position: chr17:1,467,294
INFO 2026-06-08 09:23:13 MarkDuplicates Tracking 240834 as yet unmatched pairs. 65901 records in RAM.
INFO 2026-06-08 09:23:15 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 1s. Last read position: chr17:2,343,549
INFO 2026-06-08 09:23:15 MarkDuplicates Tracking 238519 as yet unmatched pairs. 63580 records in RAM.
INFO 2026-06-08 09:23:17 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:16:47s. Time for last 1,000,000: 1s. Last read position: chr17:4,545,287
INFO 2026-06-08 09:23:17 MarkDuplicates Tracking 237091 as yet unmatched pairs. 62152 records in RAM.
INFO 2026-06-08 09:23:18 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:16:49s. Time for last 1,000,000: 1s. Last read position: chr17:5,004,584
INFO 2026-06-08 09:23:18 MarkDuplicates Tracking 236368 as yet unmatched pairs. 61428 records in RAM.
INFO 2026-06-08 09:23:20 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 1s. Last read position: chr17:7,243,889
INFO 2026-06-08 09:23:20 MarkDuplicates Tracking 233655 as yet unmatched pairs. 58715 records in RAM.
INFO 2026-06-08 09:23:21 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:16:52s. Time for last 1,000,000: 1s. Last read position: chr17:7,513,196
INFO 2026-06-08 09:23:21 MarkDuplicates Tracking 232836 as yet unmatched pairs. 57896 records in RAM.
INFO 2026-06-08 09:23:23 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:16:54s. Time for last 1,000,000: 1s. Last read position: chr17:7,905,113
INFO 2026-06-08 09:23:23 MarkDuplicates Tracking 231043 as yet unmatched pairs. 56099 records in RAM.
INFO 2026-06-08 09:23:25 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 1s. Last read position: chr17:16,068,103
INFO 2026-06-08 09:23:25 MarkDuplicates Tracking 230275 as yet unmatched pairs. 55330 records in RAM.
INFO 2026-06-08 09:23:27 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 1s. Last read position: chr17:17,797,822
INFO 2026-06-08 09:23:27 MarkDuplicates Tracking 227643 as yet unmatched pairs. 52697 records in RAM.
INFO 2026-06-08 09:23:29 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 2s. Last read position: chr17:20,416,678
INFO 2026-06-08 09:23:29 MarkDuplicates Tracking 225591 as yet unmatched pairs. 50641 records in RAM.
INFO 2026-06-08 09:23:31 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 1s. Last read position: chr17:28,644,995
INFO 2026-06-08 09:23:31 MarkDuplicates Tracking 224197 as yet unmatched pairs. 49246 records in RAM.
INFO 2026-06-08 09:23:32 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 1s. Last read position: chr17:30,422,784
INFO 2026-06-08 09:23:32 MarkDuplicates Tracking 223456 as yet unmatched pairs. 48505 records in RAM.
INFO 2026-06-08 09:24:40 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 67s. Last read position: chr17:35,001,970
INFO 2026-06-08 09:24:40 MarkDuplicates Tracking 221266 as yet unmatched pairs. 46315 records in RAM.
INFO 2026-06-08 09:25:54 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 74s. Last read position: chr17:37,129,443
INFO 2026-06-08 09:25:54 MarkDuplicates Tracking 220209 as yet unmatched pairs. 45254 records in RAM.
INFO 2026-06-08 09:25:56 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 2s. Last read position: chr17:38,852,691
INFO 2026-06-08 09:25:56 MarkDuplicates Tracking 218728 as yet unmatched pairs. 43772 records in RAM.
INFO 2026-06-08 09:25:58 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr17:39,709,346
INFO 2026-06-08 09:25:58 MarkDuplicates Tracking 220490 as yet unmatched pairs. 45531 records in RAM.
INFO 2026-06-08 09:26:00 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr17:39,727,322
INFO 2026-06-08 09:26:00 MarkDuplicates Tracking 219860 as yet unmatched pairs. 44901 records in RAM.
INFO 2026-06-08 09:26:01 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr17:40,642,462
INFO 2026-06-08 09:26:01 MarkDuplicates Tracking 214126 as yet unmatched pairs. 39161 records in RAM.
INFO 2026-06-08 09:26:03 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr17:41,767,433
INFO 2026-06-08 09:26:03 MarkDuplicates Tracking 213458 as yet unmatched pairs. 38493 records in RAM.
INFO 2026-06-08 09:26:05 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr17:42,582,093
INFO 2026-06-08 09:26:05 MarkDuplicates Tracking 210315 as yet unmatched pairs. 35349 records in RAM.
INFO 2026-06-08 09:26:07 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr17:44,176,847
INFO 2026-06-08 09:26:07 MarkDuplicates Tracking 208402 as yet unmatched pairs. 33433 records in RAM.
INFO 2026-06-08 09:26:08 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr17:45,149,841
INFO 2026-06-08 09:26:08 MarkDuplicates Tracking 206634 as yet unmatched pairs. 31665 records in RAM.
INFO 2026-06-08 09:26:10 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr17:47,669,711
INFO 2026-06-08 09:26:10 MarkDuplicates Tracking 206355 as yet unmatched pairs. 31383 records in RAM.
INFO 2026-06-08 09:26:12 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr17:48,912,971
INFO 2026-06-08 09:26:12 MarkDuplicates Tracking 203853 as yet unmatched pairs. 28881 records in RAM.
INFO 2026-06-08 09:26:13 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,341
INFO 2026-06-08 09:26:13 MarkDuplicates Tracking 209415 as yet unmatched pairs. 34443 records in RAM.
INFO 2026-06-08 09:26:15 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 2s. Last read position: chr17:50,547,726
INFO 2026-06-08 09:26:15 MarkDuplicates Tracking 200915 as yet unmatched pairs. 25943 records in RAM.
INFO 2026-06-08 09:26:17 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr17:56,895,423
INFO 2026-06-08 09:26:17 MarkDuplicates Tracking 199030 as yet unmatched pairs. 24055 records in RAM.
INFO 2026-06-08 09:26:19 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr17:59,648,352
INFO 2026-06-08 09:26:19 MarkDuplicates Tracking 200366 as yet unmatched pairs. 25390 records in RAM.
INFO 2026-06-08 09:26:21 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 2s. Last read position: chr17:59,697,442
INFO 2026-06-08 09:26:21 MarkDuplicates Tracking 196090 as yet unmatched pairs. 21114 records in RAM.
INFO 2026-06-08 09:26:23 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr17:63,831,132
INFO 2026-06-08 09:26:23 MarkDuplicates Tracking 194604 as yet unmatched pairs. 19622 records in RAM.
INFO 2026-06-08 09:26:25 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr17:67,826,116
INFO 2026-06-08 09:26:25 MarkDuplicates Tracking 192613 as yet unmatched pairs. 17631 records in RAM.
INFO 2026-06-08 09:26:26 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr17:74,209,255
INFO 2026-06-08 09:26:26 MarkDuplicates Tracking 191089 as yet unmatched pairs. 16104 records in RAM.
INFO 2026-06-08 09:26:28 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 2s. Last read position: chr17:75,570,188
INFO 2026-06-08 09:26:28 MarkDuplicates Tracking 190433 as yet unmatched pairs. 15448 records in RAM.
INFO 2026-06-08 09:26:30 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr17:75,757,280
INFO 2026-06-08 09:26:30 MarkDuplicates Tracking 189490 as yet unmatched pairs. 14505 records in RAM.
INFO 2026-06-08 09:26:32 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr17:76,265,527
INFO 2026-06-08 09:26:32 MarkDuplicates Tracking 186503 as yet unmatched pairs. 11518 records in RAM.
INFO 2026-06-08 09:26:33 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr17:78,171,888
INFO 2026-06-08 09:26:33 MarkDuplicates Tracking 188588 as yet unmatched pairs. 13601 records in RAM.
INFO 2026-06-08 09:26:35 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr17:80,107,636
INFO 2026-06-08 09:26:35 MarkDuplicates Tracking 182541 as yet unmatched pairs. 7554 records in RAM.
INFO 2026-06-08 09:26:37 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr17:81,510,745
INFO 2026-06-08 09:26:37 MarkDuplicates Tracking 185904 as yet unmatched pairs. 10914 records in RAM.
INFO 2026-06-08 09:26:38 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr17:81,846,429
INFO 2026-06-08 09:26:38 MarkDuplicates Tracking 182685 as yet unmatched pairs. 7694 records in RAM.
INFO 2026-06-08 09:26:40 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr17:82,080,432
INFO 2026-06-08 09:26:40 MarkDuplicates Tracking 177914 as yet unmatched pairs. 2923 records in RAM.
INFO 2026-06-08 09:26:42 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr17:82,900,680
INFO 2026-06-08 09:26:42 MarkDuplicates Tracking 176320 as yet unmatched pairs. 1329 records in RAM.
INFO 2026-06-08 09:26:44 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 2s. Last read position: chr18:9,931,917
INFO 2026-06-08 09:26:44 MarkDuplicates Tracking 175256 as yet unmatched pairs. 10493 records in RAM.
INFO 2026-06-08 09:26:46 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 2s. Last read position: chr18:25,226,730
INFO 2026-06-08 09:26:46 MarkDuplicates Tracking 172214 as yet unmatched pairs. 7447 records in RAM.
INFO 2026-06-08 09:26:49 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 2s. Last read position: chr18:35,692,227
INFO 2026-06-08 09:26:49 MarkDuplicates Tracking 172377 as yet unmatched pairs. 7610 records in RAM.
INFO 2026-06-08 09:26:50 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr18:49,565,331
INFO 2026-06-08 09:26:50 MarkDuplicates Tracking 170009 as yet unmatched pairs. 5241 records in RAM.
INFO 2026-06-08 09:26:52 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr18:57,661,361
INFO 2026-06-08 09:26:52 MarkDuplicates Tracking 168800 as yet unmatched pairs. 4032 records in RAM.
INFO 2026-06-08 09:26:53 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr18:63,390,999
INFO 2026-06-08 09:26:53 MarkDuplicates Tracking 167289 as yet unmatched pairs. 2521 records in RAM.
INFO 2026-06-08 09:26:56 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 2s. Last read position: chr19:572,603
INFO 2026-06-08 09:26:56 MarkDuplicates Tracking 165071 as yet unmatched pairs. 87324 records in RAM.
INFO 2026-06-08 09:26:58 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr19:808,430
INFO 2026-06-08 09:26:58 MarkDuplicates Tracking 164705 as yet unmatched pairs. 86958 records in RAM.
INFO 2026-06-08 09:26:59 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr19:1,272,252
INFO 2026-06-08 09:26:59 MarkDuplicates Tracking 162960 as yet unmatched pairs. 85213 records in RAM.
INFO 2026-06-08 09:27:01 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr19:1,854,656
INFO 2026-06-08 09:27:01 MarkDuplicates Tracking 159524 as yet unmatched pairs. 81777 records in RAM.
INFO 2026-06-08 09:27:03 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 2s. Last read position: chr19:2,438,515
INFO 2026-06-08 09:27:03 MarkDuplicates Tracking 157152 as yet unmatched pairs. 79405 records in RAM.
INFO 2026-06-08 09:27:04 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr19:4,048,197
INFO 2026-06-08 09:27:04 MarkDuplicates Tracking 155771 as yet unmatched pairs. 78023 records in RAM.
INFO 2026-06-08 09:27:06 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 2s. Last read position: chr19:5,595,458
INFO 2026-06-08 09:27:06 MarkDuplicates Tracking 153250 as yet unmatched pairs. 75501 records in RAM.
INFO 2026-06-08 09:27:09 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 2s. Last read position: chr19:6,454,623
INFO 2026-06-08 09:27:09 MarkDuplicates Tracking 151716 as yet unmatched pairs. 73967 records in RAM.
INFO 2026-06-08 09:27:11 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr19:7,922,497
INFO 2026-06-08 09:27:11 MarkDuplicates Tracking 149943 as yet unmatched pairs. 72194 records in RAM.
INFO 2026-06-08 09:27:13 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 2s. Last read position: chr19:10,258,638
INFO 2026-06-08 09:27:13 MarkDuplicates Tracking 148577 as yet unmatched pairs. 70828 records in RAM.
INFO 2026-06-08 09:27:15 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chr19:10,819,979
INFO 2026-06-08 09:27:15 MarkDuplicates Tracking 147368 as yet unmatched pairs. 69618 records in RAM.
INFO 2026-06-08 09:27:16 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chr19:11,447,775
INFO 2026-06-08 09:27:16 MarkDuplicates Tracking 147105 as yet unmatched pairs. 69353 records in RAM.
INFO 2026-06-08 09:27:18 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr19:12,922,859
INFO 2026-06-08 09:27:18 MarkDuplicates Tracking 143284 as yet unmatched pairs. 65532 records in RAM.
INFO 2026-06-08 09:27:20 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chr19:14,106,786
INFO 2026-06-08 09:27:20 MarkDuplicates Tracking 142416 as yet unmatched pairs. 64661 records in RAM.
INFO 2026-06-08 09:27:22 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chr19:15,239,432
INFO 2026-06-08 09:27:22 MarkDuplicates Tracking 139930 as yet unmatched pairs. 62175 records in RAM.
INFO 2026-06-08 09:27:24 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chr19:17,210,800
INFO 2026-06-08 09:27:24 MarkDuplicates Tracking 137930 as yet unmatched pairs. 60175 records in RAM.
INFO 2026-06-08 09:27:26 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chr19:18,110,716
INFO 2026-06-08 09:27:26 MarkDuplicates Tracking 136044 as yet unmatched pairs. 58287 records in RAM.
INFO 2026-06-08 09:27:28 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 2s. Last read position: chr19:18,921,887
INFO 2026-06-08 09:27:28 MarkDuplicates Tracking 133948 as yet unmatched pairs. 56191 records in RAM.
INFO 2026-06-08 09:27:29 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chr19:33,302,142
INFO 2026-06-08 09:27:29 MarkDuplicates Tracking 132287 as yet unmatched pairs. 54530 records in RAM.
INFO 2026-06-08 09:27:31 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chr19:35,166,252
INFO 2026-06-08 09:27:31 MarkDuplicates Tracking 133336 as yet unmatched pairs. 55579 records in RAM.
INFO 2026-06-08 09:27:33 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chr19:36,121,708
INFO 2026-06-08 09:27:33 MarkDuplicates Tracking 129197 as yet unmatched pairs. 51440 records in RAM.
INFO 2026-06-08 09:27:34 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chr19:38,647,822
INFO 2026-06-08 09:27:34 MarkDuplicates Tracking 130162 as yet unmatched pairs. 52405 records in RAM.
INFO 2026-06-08 09:27:36 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: chr19:38,803,868
INFO 2026-06-08 09:27:36 MarkDuplicates Tracking 141410 as yet unmatched pairs. 63653 records in RAM.
INFO 2026-06-08 09:27:38 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chr19:39,433,544
INFO 2026-06-08 09:27:38 MarkDuplicates Tracking 132211 as yet unmatched pairs. 54454 records in RAM.
INFO 2026-06-08 09:27:40 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 2s. Last read position: chr19:39,872,119
INFO 2026-06-08 09:27:40 MarkDuplicates Tracking 132726 as yet unmatched pairs. 54966 records in RAM.
INFO 2026-06-08 09:27:41 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chr19:39,875,536
INFO 2026-06-08 09:27:41 MarkDuplicates Tracking 144151 as yet unmatched pairs. 66391 records in RAM.
INFO 2026-06-08 09:27:43 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 1s. Last read position: chr19:39,877,024
INFO 2026-06-08 09:27:43 MarkDuplicates Tracking 120818 as yet unmatched pairs. 43058 records in RAM.
INFO 2026-06-08 09:27:45 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 1s. Last read position: chr19:39,878,110
INFO 2026-06-08 09:27:45 MarkDuplicates Tracking 150397 as yet unmatched pairs. 72637 records in RAM.
INFO 2026-06-08 09:27:46 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 1s. Last read position: chr19:39,883,385
INFO 2026-06-08 09:27:46 MarkDuplicates Tracking 159169 as yet unmatched pairs. 81409 records in RAM.
INFO 2026-06-08 09:27:49 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 2s. Last read position: chr19:39,886,370
INFO 2026-06-08 09:27:49 MarkDuplicates Tracking 149933 as yet unmatched pairs. 72166 records in RAM.
INFO 2026-06-08 09:27:51 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 2s. Last read position: chr19:39,889,881
INFO 2026-06-08 09:27:51 MarkDuplicates Tracking 153868 as yet unmatched pairs. 76101 records in RAM.
INFO 2026-06-08 09:27:53 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 2s. Last read position: chr19:39,891,880
INFO 2026-06-08 09:27:53 MarkDuplicates Tracking 151274 as yet unmatched pairs. 73507 records in RAM.
INFO 2026-06-08 09:27:55 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:21:25s. Time for last 1,000,000: 1s. Last read position: chr19:39,893,231
INFO 2026-06-08 09:27:55 MarkDuplicates Tracking 138946 as yet unmatched pairs. 61177 records in RAM.
INFO 2026-06-08 09:27:56 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 1s. Last read position: chr19:39,894,291
INFO 2026-06-08 09:27:56 MarkDuplicates Tracking 133576 as yet unmatched pairs. 55807 records in RAM.
INFO 2026-06-08 09:27:58 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 1s. Last read position: chr19:39,902,255
INFO 2026-06-08 09:27:58 MarkDuplicates Tracking 121197 as yet unmatched pairs. 43428 records in RAM.
INFO 2026-06-08 09:27:59 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 1s. Last read position: chr19:39,906,055
INFO 2026-06-08 09:27:59 MarkDuplicates Tracking 123805 as yet unmatched pairs. 46036 records in RAM.
INFO 2026-06-08 09:28:01 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: chr19:39,915,714
INFO 2026-06-08 09:28:01 MarkDuplicates Tracking 123266 as yet unmatched pairs. 45496 records in RAM.
INFO 2026-06-08 09:28:02 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 1s. Last read position: chr19:39,927,228
INFO 2026-06-08 09:28:02 MarkDuplicates Tracking 116969 as yet unmatched pairs. 39196 records in RAM.
INFO 2026-06-08 09:28:04 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:21:34s. Time for last 1,000,000: 1s. Last read position: chr19:40,242,534
INFO 2026-06-08 09:28:04 MarkDuplicates Tracking 104621 as yet unmatched pairs. 26848 records in RAM.
INFO 2026-06-08 09:28:05 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 1s. Last read position: chr19:41,506,165
INFO 2026-06-08 09:28:05 MarkDuplicates Tracking 101332 as yet unmatched pairs. 23559 records in RAM.
INFO 2026-06-08 09:28:07 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 1s. Last read position: chr19:41,717,561
INFO 2026-06-08 09:28:07 MarkDuplicates Tracking 121067 as yet unmatched pairs. 43294 records in RAM.
INFO 2026-06-08 09:28:09 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:21:39s. Time for last 1,000,000: 1s. Last read position: chr19:41,756,819
INFO 2026-06-08 09:28:09 MarkDuplicates Tracking 103493 as yet unmatched pairs. 25717 records in RAM.
INFO 2026-06-08 09:28:11 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:21:41s. Time for last 1,000,000: 1s. Last read position: chr19:42,291,725
INFO 2026-06-08 09:28:11 MarkDuplicates Tracking 97818 as yet unmatched pairs. 20042 records in RAM.
INFO 2026-06-08 09:28:12 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:21:43s. Time for last 1,000,000: 1s. Last read position: chr19:44,846,457
INFO 2026-06-08 09:28:12 MarkDuplicates Tracking 96070 as yet unmatched pairs. 18294 records in RAM.
INFO 2026-06-08 09:28:14 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 1s. Last read position: chr19:45,777,781
INFO 2026-06-08 09:28:14 MarkDuplicates Tracking 93982 as yet unmatched pairs. 16205 records in RAM.
INFO 2026-06-08 09:28:16 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:21:46s. Time for last 1,000,000: 1s. Last read position: chr19:47,680,917
INFO 2026-06-08 09:28:16 MarkDuplicates Tracking 91984 as yet unmatched pairs. 14207 records in RAM.
INFO 2026-06-08 09:28:17 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 1s. Last read position: chr19:48,800,031
INFO 2026-06-08 09:28:17 MarkDuplicates Tracking 90880 as yet unmatched pairs. 13103 records in RAM.
INFO 2026-06-08 09:28:20 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 2s. Last read position: chr19:49,490,554
INFO 2026-06-08 09:28:20 MarkDuplicates Tracking 96747 as yet unmatched pairs. 18970 records in RAM.
INFO 2026-06-08 09:28:21 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:21:52s. Time for last 1,000,000: 1s. Last read position: chr19:49,832,001
INFO 2026-06-08 09:28:21 MarkDuplicates Tracking 87801 as yet unmatched pairs. 10024 records in RAM.
INFO 2026-06-08 09:28:24 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:21:54s. Time for last 1,000,000: 2s. Last read position: chr19:50,475,858
INFO 2026-06-08 09:28:24 MarkDuplicates Tracking 84705 as yet unmatched pairs. 6921 records in RAM.
INFO 2026-06-08 09:28:25 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:21:56s. Time for last 1,000,000: 1s. Last read position: chr19:54,148,328
INFO 2026-06-08 09:28:25 MarkDuplicates Tracking 83649 as yet unmatched pairs. 5865 records in RAM.
INFO 2026-06-08 09:28:27 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 2s. Last read position: chr19:55,202,241
INFO 2026-06-08 09:28:27 MarkDuplicates Tracking 82409 as yet unmatched pairs. 4625 records in RAM.
INFO 2026-06-08 09:28:29 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:21:59s. Time for last 1,000,000: 1s. Last read position: chr19:57,284,631
INFO 2026-06-08 09:28:29 MarkDuplicates Tracking 80185 as yet unmatched pairs. 2401 records in RAM.
INFO 2026-06-08 09:28:31 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:22:01s. Time for last 1,000,000: 1s. Last read position: chr20:297,908
INFO 2026-06-08 09:28:31 MarkDuplicates Tracking 77801 as yet unmatched pairs. 21223 records in RAM.
INFO 2026-06-08 09:28:33 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:22:03s. Time for last 1,000,000: 1s. Last read position: chr20:3,857,737
INFO 2026-06-08 09:28:33 MarkDuplicates Tracking 76698 as yet unmatched pairs. 20120 records in RAM.
INFO 2026-06-08 09:28:34 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:22:05s. Time for last 1,000,000: 1s. Last read position: chr20:16,528,431
INFO 2026-06-08 09:28:34 MarkDuplicates Tracking 74624 as yet unmatched pairs. 18045 records in RAM.
INFO 2026-06-08 09:28:36 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 1s. Last read position: chr20:20,536,672
INFO 2026-06-08 09:28:36 MarkDuplicates Tracking 73423 as yet unmatched pairs. 16844 records in RAM.
INFO 2026-06-08 09:28:38 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:22:08s. Time for last 1,000,000: 1s. Last read position: chr20:25,278,391
INFO 2026-06-08 09:28:38 MarkDuplicates Tracking 79843 as yet unmatched pairs. 23264 records in RAM.
INFO 2026-06-08 09:28:40 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:22:10s. Time for last 1,000,000: 1s. Last read position: chr20:32,846,718
INFO 2026-06-08 09:28:40 MarkDuplicates Tracking 69875 as yet unmatched pairs. 13296 records in RAM.
INFO 2026-06-08 09:28:41 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:22:12s. Time for last 1,000,000: 1s. Last read position: chr20:35,548,812
INFO 2026-06-08 09:28:41 MarkDuplicates Tracking 70477 as yet unmatched pairs. 13897 records in RAM.
INFO 2026-06-08 09:28:43 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:22:13s. Time for last 1,000,000: 1s. Last read position: chr20:37,403,379
INFO 2026-06-08 09:28:43 MarkDuplicates Tracking 66819 as yet unmatched pairs. 10239 records in RAM.
INFO 2026-06-08 09:28:44 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:22:15s. Time for last 1,000,000: 1s. Last read position: chr20:45,174,916
INFO 2026-06-08 09:28:44 MarkDuplicates Tracking 66253 as yet unmatched pairs. 9672 records in RAM.
INFO 2026-06-08 09:28:46 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:22:17s. Time for last 1,000,000: 1s. Last read position: chr20:46,375,669
INFO 2026-06-08 09:28:46 MarkDuplicates Tracking 63706 as yet unmatched pairs. 7125 records in RAM.
INFO 2026-06-08 09:28:48 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:22:18s. Time for last 1,000,000: 1s. Last read position: chr20:50,936,180
INFO 2026-06-08 09:28:48 MarkDuplicates Tracking 62434 as yet unmatched pairs. 5847 records in RAM.
INFO 2026-06-08 09:28:49 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:22:20s. Time for last 1,000,000: 1s. Last read position: chr20:58,909,165
INFO 2026-06-08 09:28:49 MarkDuplicates Tracking 66402 as yet unmatched pairs. 9815 records in RAM.
INFO 2026-06-08 09:28:52 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:22:22s. Time for last 1,000,000: 2s. Last read position: chr20:62,879,584
INFO 2026-06-08 09:28:52 MarkDuplicates Tracking 58830 as yet unmatched pairs. 2243 records in RAM.
INFO 2026-06-08 09:28:54 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:22:24s. Time for last 1,000,000: 2s. Last read position: chr20:64,027,086
INFO 2026-06-08 09:28:54 MarkDuplicates Tracking 56805 as yet unmatched pairs. 218 records in RAM.
INFO 2026-06-08 09:28:56 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:22:26s. Time for last 1,000,000: 1s. Last read position: chr21:14,381,298
INFO 2026-06-08 09:28:56 MarkDuplicates Tracking 55816 as yet unmatched pairs. 9991 records in RAM.
INFO 2026-06-08 09:28:57 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:22:28s. Time for last 1,000,000: 1s. Last read position: chr21:29,042,069
INFO 2026-06-08 09:28:57 MarkDuplicates Tracking 54671 as yet unmatched pairs. 8846 records in RAM.
INFO 2026-06-08 09:28:59 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:22:30s. Time for last 1,000,000: 1s. Last read position: chr21:33,589,789
INFO 2026-06-08 09:28:59 MarkDuplicates Tracking 53140 as yet unmatched pairs. 7315 records in RAM.
INFO 2026-06-08 09:29:01 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:22:31s. Time for last 1,000,000: 1s. Last read position: chr21:39,218,564
INFO 2026-06-08 09:29:01 MarkDuplicates Tracking 51829 as yet unmatched pairs. 6004 records in RAM.
INFO 2026-06-08 09:29:02 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:22:33s. Time for last 1,000,000: 1s. Last read position: chr21:42,312,260
INFO 2026-06-08 09:29:02 MarkDuplicates Tracking 64087 as yet unmatched pairs. 18261 records in RAM.
INFO 2026-06-08 09:29:04 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:22:35s. Time for last 1,000,000: 1s. Last read position: chr21:44,241,315
INFO 2026-06-08 09:29:04 MarkDuplicates Tracking 48035 as yet unmatched pairs. 2209 records in RAM.
INFO 2026-06-08 09:29:06 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:22:36s. Time for last 1,000,000: 1s. Last read position: chr21:46,363,720
INFO 2026-06-08 09:29:06 MarkDuplicates Tracking 46514 as yet unmatched pairs. 688 records in RAM.
INFO 2026-06-08 09:29:08 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:22:39s. Time for last 1,000,000: 2s. Last read position: chr22:20,119,011
INFO 2026-06-08 09:29:08 MarkDuplicates Tracking 45013 as yet unmatched pairs. 22698 records in RAM.
INFO 2026-06-08 09:29:10 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:22:41s. Time for last 1,000,000: 2s. Last read position: chr22:23,182,130
INFO 2026-06-08 09:29:10 MarkDuplicates Tracking 44149 as yet unmatched pairs. 21830 records in RAM.
INFO 2026-06-08 09:29:12 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:22:43s. Time for last 1,000,000: 1s. Last read position: chr22:24,543,057
INFO 2026-06-08 09:29:12 MarkDuplicates Tracking 41548 as yet unmatched pairs. 19229 records in RAM.
INFO 2026-06-08 09:29:14 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:22:44s. Time for last 1,000,000: 1s. Last read position: chr22:29,292,144
INFO 2026-06-08 09:29:14 MarkDuplicates Tracking 46416 as yet unmatched pairs. 24097 records in RAM.
INFO 2026-06-08 09:29:16 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:22:46s. Time for last 1,000,000: 1s. Last read position: chr22:31,201,563
INFO 2026-06-08 09:29:16 MarkDuplicates Tracking 38187 as yet unmatched pairs. 15867 records in RAM.
INFO 2026-06-08 09:29:17 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:22:48s. Time for last 1,000,000: 1s. Last read position: chr22:36,282,697
INFO 2026-06-08 09:29:17 MarkDuplicates Tracking 37411 as yet unmatched pairs. 15091 records in RAM.
INFO 2026-06-08 09:29:19 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:22:49s. Time for last 1,000,000: 1s. Last read position: chr22:36,519,469
INFO 2026-06-08 09:29:19 MarkDuplicates Tracking 35419 as yet unmatched pairs. 13099 records in RAM.
INFO 2026-06-08 09:29:20 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:22:51s. Time for last 1,000,000: 1s. Last read position: chr22:37,874,451
INFO 2026-06-08 09:29:20 MarkDuplicates Tracking 34989 as yet unmatched pairs. 12669 records in RAM.
INFO 2026-06-08 09:29:22 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:22:53s. Time for last 1,000,000: 1s. Last read position: chr22:39,514,141
INFO 2026-06-08 09:29:22 MarkDuplicates Tracking 31112 as yet unmatched pairs. 8792 records in RAM.
INFO 2026-06-08 09:29:24 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:22:55s. Time for last 1,000,000: 2s. Last read position: chr22:41,436,968
INFO 2026-06-08 09:29:24 MarkDuplicates Tracking 31102 as yet unmatched pairs. 8782 records in RAM.
INFO 2026-06-08 09:29:26 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:22:57s. Time for last 1,000,000: 2s. Last read position: chr22:42,835,368
INFO 2026-06-08 09:29:26 MarkDuplicates Tracking 28593 as yet unmatched pairs. 6272 records in RAM.
INFO 2026-06-08 09:29:28 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:22:59s. Time for last 1,000,000: 1s. Last read position: chr22:46,797,505
INFO 2026-06-08 09:29:28 MarkDuplicates Tracking 26438 as yet unmatched pairs. 4117 records in RAM.
INFO 2026-06-08 09:29:30 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:23:00s. Time for last 1,000,000: 1s. Last read position: chr22:50,436,433
INFO 2026-06-08 09:29:30 MarkDuplicates Tracking 24375 as yet unmatched pairs. 2054 records in RAM.
INFO 2026-06-08 09:29:31 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:23:02s. Time for last 1,000,000: 1s. Last read position: chrX:1,403,290
INFO 2026-06-08 09:29:31 MarkDuplicates Tracking 22102 as yet unmatched pairs. 20480 records in RAM.
INFO 2026-06-08 09:29:33 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:23:04s. Time for last 1,000,000: 1s. Last read position: chrX:16,719,694
INFO 2026-06-08 09:29:33 MarkDuplicates Tracking 21294 as yet unmatched pairs. 19672 records in RAM.
INFO 2026-06-08 09:29:35 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:23:05s. Time for last 1,000,000: 1s. Last read position: chrX:24,498,872
INFO 2026-06-08 09:29:35 MarkDuplicates Tracking 19492 as yet unmatched pairs. 17870 records in RAM.
INFO 2026-06-08 09:29:37 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:23:07s. Time for last 1,000,000: 1s. Last read position: chrX:41,553,842
INFO 2026-06-08 09:29:37 MarkDuplicates Tracking 18731 as yet unmatched pairs. 17109 records in RAM.
INFO 2026-06-08 09:29:38 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:23:09s. Time for last 1,000,000: 1s. Last read position: chrX:47,582,446
INFO 2026-06-08 09:29:38 MarkDuplicates Tracking 17296 as yet unmatched pairs. 15674 records in RAM.
INFO 2026-06-08 09:29:40 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:23:10s. Time for last 1,000,000: 1s. Last read position: chrX:49,256,756
INFO 2026-06-08 09:29:40 MarkDuplicates Tracking 14702 as yet unmatched pairs. 13080 records in RAM.
INFO 2026-06-08 09:29:41 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:23:12s. Time for last 1,000,000: 1s. Last read position: chrX:53,629,589
INFO 2026-06-08 09:29:41 MarkDuplicates Tracking 14303 as yet unmatched pairs. 12681 records in RAM.
INFO 2026-06-08 09:29:43 MarkDuplicates Read 641,000,000 records. Elapsed time: 00:23:14s. Time for last 1,000,000: 1s. Last read position: chrX:70,500,470
INFO 2026-06-08 09:29:43 MarkDuplicates Tracking 12588 as yet unmatched pairs. 10966 records in RAM.
INFO 2026-06-08 09:29:45 MarkDuplicates Read 642,000,000 records. Elapsed time: 00:23:16s. Time for last 1,000,000: 1s. Last read position: chrX:72,644,473
INFO 2026-06-08 09:29:45 MarkDuplicates Tracking 10348 as yet unmatched pairs. 8726 records in RAM.
INFO 2026-06-08 09:29:47 MarkDuplicates Read 643,000,000 records. Elapsed time: 00:23:17s. Time for last 1,000,000: 1s. Last read position: chrX:96,916,492
INFO 2026-06-08 09:29:47 MarkDuplicates Tracking 9434 as yet unmatched pairs. 7812 records in RAM.
INFO 2026-06-08 09:29:49 MarkDuplicates Read 644,000,000 records. Elapsed time: 00:23:19s. Time for last 1,000,000: 1s. Last read position: chrX:108,126,117
INFO 2026-06-08 09:29:49 MarkDuplicates Tracking 7834 as yet unmatched pairs. 6212 records in RAM.
INFO 2026-06-08 09:29:51 MarkDuplicates Read 645,000,000 records. Elapsed time: 00:23:22s. Time for last 1,000,000: 2s. Last read position: chrX:124,050,185
INFO 2026-06-08 09:29:51 MarkDuplicates Tracking 6998 as yet unmatched pairs. 5376 records in RAM.
INFO 2026-06-08 09:29:53 MarkDuplicates Read 646,000,000 records. Elapsed time: 00:23:24s. Time for last 1,000,000: 1s. Last read position: chrX:152,945,364
INFO 2026-06-08 09:29:53 MarkDuplicates Tracking 5077 as yet unmatched pairs. 3455 records in RAM.
INFO 2026-06-08 09:29:55 MarkDuplicates Read 647,000,000 records. Elapsed time: 00:23:25s. Time for last 1,000,000: 1s. Last read position: chrX:154,353,300
INFO 2026-06-08 09:29:55 MarkDuplicates Tracking 3647 as yet unmatched pairs. 2025 records in RAM.
INFO 2026-06-08 09:29:56 MarkDuplicates Read 648,000,000 records. Elapsed time: 00:23:27s. Time for last 1,000,000: 1s. Last read position: chrX:156,022,092
INFO 2026-06-08 09:29:56 MarkDuplicates Tracking 1682 as yet unmatched pairs. 60 records in RAM.
INFO 2026-06-08 09:29:58 MarkDuplicates Read 649,000,000 records. Elapsed time: 00:23:28s. Time for last 1,000,000: 1s. Last read position: KI270733.1:169,759
INFO 2026-06-08 09:29:58 MarkDuplicates Tracking 75 as yet unmatched pairs. 71 records in RAM.
INFO 2026-06-08 09:29:58 MarkDuplicates Read 649239311 records. 0 pairs never matched.
INFO 2026-06-08 09:30:51 MarkDuplicates After buildSortedReadEndLists freeMemory: 204143088; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:30:51 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:30:55 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:30:55 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:31:04 OpticalDuplicateFinder Large duplicate set. size = 1175
INFO 2026-06-08 09:31:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,325
INFO 2026-06-08 09:31:28 OpticalDuplicateFinder Large duplicate set. size = 1075
INFO 2026-06-08 09:31:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,392
INFO 2026-06-08 09:31:28 OpticalDuplicateFinder Large duplicate set. size = 1234
INFO 2026-06-08 09:31:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,413
INFO 2026-06-08 09:31:28 OpticalDuplicateFinder Large duplicate set. size = 1069
INFO 2026-06-08 09:31:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,049
INFO 2026-06-08 09:31:28 OpticalDuplicateFinder Large duplicate set. size = 1472
INFO 2026-06-08 09:31:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,053
INFO 2026-06-08 09:31:28 OpticalDuplicateFinder Large duplicate set. size = 1214
INFO 2026-06-08 09:31:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,799
INFO 2026-06-08 09:31:28 OpticalDuplicateFinder Large duplicate set. size = 1130
INFO 2026-06-08 09:31:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,249
INFO 2026-06-08 09:31:29 OpticalDuplicateFinder Large duplicate set. size = 1528
INFO 2026-06-08 09:31:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,637
INFO 2026-06-08 09:31:29 OpticalDuplicateFinder Large duplicate set. size = 1846
INFO 2026-06-08 09:31:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,854
INFO 2026-06-08 09:31:29 OpticalDuplicateFinder Large duplicate set. size = 4711
INFO 2026-06-08 09:31:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,189
INFO 2026-06-08 09:31:29 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,313
INFO 2026-06-08 09:31:29 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,785
INFO 2026-06-08 09:31:29 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,727
INFO 2026-06-08 09:31:29 OpticalDuplicateFinder Large duplicate set. size = 1190
INFO 2026-06-08 09:31:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,819
INFO 2026-06-08 09:31:30 OpticalDuplicateFinder Large duplicate set. size = 1078
INFO 2026-06-08 09:31:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,639
INFO 2026-06-08 09:31:30 OpticalDuplicateFinder Large duplicate set. size = 1006
INFO 2026-06-08 09:31:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,139
INFO 2026-06-08 09:31:30 OpticalDuplicateFinder Large duplicate set. size = 1167
INFO 2026-06-08 09:31:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,192
INFO 2026-06-08 09:31:30 OpticalDuplicateFinder Large duplicate set. size = 3125
INFO 2026-06-08 09:31:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,081
INFO 2026-06-08 09:31:30 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,692
INFO 2026-06-08 09:31:30 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,986
INFO 2026-06-08 09:31:30 OpticalDuplicateFinder Large duplicate set. size = 1095
INFO 2026-06-08 09:31:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,389
INFO 2026-06-08 09:31:30 OpticalDuplicateFinder Large duplicate set. size = 1344
INFO 2026-06-08 09:31:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,523
INFO 2026-06-08 09:31:30 OpticalDuplicateFinder Large duplicate set. size = 1459
INFO 2026-06-08 09:31:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,277
INFO 2026-06-08 09:31:52 OpticalDuplicateFinder Large duplicate set. size = 1471
INFO 2026-06-08 09:31:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,541
INFO 2026-06-08 09:31:52 OpticalDuplicateFinder Large duplicate set. size = 1375
INFO 2026-06-08 09:31:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,480
INFO 2026-06-08 09:32:38 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:32:38 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:33:44 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:33:50 MarkDuplicates After generateDuplicateIndexes freeMemory: 104639840; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 09:33:50 MarkDuplicates Marking 372937925 records as duplicates.
INFO 2026-06-08 09:33:50 MarkDuplicates Found 17663737 optical duplicate clusters.
INFO 2026-06-08 09:33:50 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:34:09 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:18s. Time for last 10,000,000: 18s. Last read position: chr1:23,868,116
INFO 2026-06-08 09:34:27 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:36s. Time for last 10,000,000: 17s. Last read position: chr1:46,189,387
INFO 2026-06-08 09:34:45 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:54s. Time for last 10,000,000: 18s. Last read position: chr1:117,941,126
INFO 2026-06-08 09:35:03 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:12s. Time for last 10,000,000: 17s. Last read position: chr1:155,729,083
INFO 2026-06-08 09:35:20 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:30s. Time for last 10,000,000: 17s. Last read position: chr1:201,387,118
INFO 2026-06-08 09:35:38 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:47s. Time for last 10,000,000: 17s. Last read position: chr1:224,305,087
INFO 2026-06-08 09:35:56 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:05s. Time for last 10,000,000: 18s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:36:14 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:23s. Time for last 10,000,000: 17s. Last read position: chr2:74,425,081
INFO 2026-06-08 09:36:31 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:40s. Time for last 10,000,000: 17s. Last read position: chr2:158,658,172
INFO 2026-06-08 09:36:49 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:58s. Time for last 10,000,000: 17s. Last read position: chr2:223,991,815
INFO 2026-06-08 09:37:07 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:16s. Time for last 10,000,000: 17s. Last read position: chr3:44,659,847
INFO 2026-06-08 09:37:24 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:33s. Time for last 10,000,000: 17s. Last read position: chr3:101,367,847
INFO 2026-06-08 09:37:42 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:51s. Time for last 10,000,000: 17s. Last read position: chr3:184,929,654
INFO 2026-06-08 09:37:59 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:08s. Time for last 10,000,000: 17s. Last read position: chr4:42,524,798
INFO 2026-06-08 09:38:17 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:26s. Time for last 10,000,000: 17s. Last read position: chr4:155,905,080
INFO 2026-06-08 09:38:34 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:43s. Time for last 10,000,000: 17s. Last read position: chr5:83,539,027
INFO 2026-06-08 09:38:52 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:05:01s. Time for last 10,000,000: 17s. Last read position: chr5:150,412,657
INFO 2026-06-08 09:39:09 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:18s. Time for last 10,000,000: 17s. Last read position: chr6:11,191,034
INFO 2026-06-08 09:39:28 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:38s. Time for last 10,000,000: 19s. Last read position: chr6:33,069,137
INFO 2026-06-08 09:39:47 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:56s. Time for last 10,000,000: 18s. Last read position: chr6:109,441,561
INFO 2026-06-08 09:40:04 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:13s. Time for last 10,000,000: 17s. Last read position: chr7:5,528,695
INFO 2026-06-08 09:40:21 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:31s. Time for last 10,000,000: 17s. Last read position: chr7:92,062,404
INFO 2026-06-08 09:40:38 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:47s. Time for last 10,000,000: 16s. Last read position: chr7:100,995,322
INFO 2026-06-08 09:40:55 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:04s. Time for last 10,000,000: 16s. Last read position: chr7:100,999,327
INFO 2026-06-08 09:41:11 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:20s. Time for last 10,000,000: 16s. Last read position: chr7:101,003,690
INFO 2026-06-08 09:41:28 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:37s. Time for last 10,000,000: 16s. Last read position: chr7:150,371,925
INFO 2026-06-08 09:41:46 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:55s. Time for last 10,000,000: 17s. Last read position: chr8:86,486,484
INFO 2026-06-08 09:42:03 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:13s. Time for last 10,000,000: 17s. Last read position: chr8:143,859,787
INFO 2026-06-08 09:42:20 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:29s. Time for last 10,000,000: 16s. Last read position: chr8:144,472,701
INFO 2026-06-08 09:42:38 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:47s. Time for last 10,000,000: 17s. Last read position: chr9:104,825,766
INFO 2026-06-08 09:42:55 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:04s. Time for last 10,000,000: 17s. Last read position: chr9:136,500,752
INFO 2026-06-08 09:43:13 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:22s. Time for last 10,000,000: 17s. Last read position: chr10:73,682,724
INFO 2026-06-08 09:43:30 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:39s. Time for last 10,000,000: 17s. Last read position: chr10:122,599,001
INFO 2026-06-08 09:43:47 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:57s. Time for last 10,000,000: 17s. Last read position: chr11:1,184,830
INFO 2026-06-08 09:44:05 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:14s. Time for last 10,000,000: 17s. Last read position: chr11:1,246,853
INFO 2026-06-08 09:44:22 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:31s. Time for last 10,000,000: 17s. Last read position: chr11:32,927,156
INFO 2026-06-08 09:44:39 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:48s. Time for last 10,000,000: 17s. Last read position: chr11:63,750,099
INFO 2026-06-08 09:44:56 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:05s. Time for last 10,000,000: 17s. Last read position: chr11:85,734,659
INFO 2026-06-08 09:45:14 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:23s. Time for last 10,000,000: 17s. Last read position: chr12:7,070,275
INFO 2026-06-08 09:45:33 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:42s. Time for last 10,000,000: 19s. Last read position: chr12:54,282,449
INFO 2026-06-08 09:45:51 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:12:01s. Time for last 10,000,000: 18s. Last read position: chr12:101,402,868
INFO 2026-06-08 09:46:12 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:21s. Time for last 10,000,000: 20s. Last read position: chr13:27,255,318
INFO 2026-06-08 09:46:30 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:39s. Time for last 10,000,000: 18s. Last read position: chr13:114,250,562
INFO 2026-06-08 09:46:50 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:59s. Time for last 10,000,000: 19s. Last read position: chr14:73,277,239
INFO 2026-06-08 09:47:09 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:18s. Time for last 10,000,000: 18s. Last read position: chr14:106,335,322
INFO 2026-06-08 09:47:27 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:36s. Time for last 10,000,000: 17s. Last read position: chr15:61,927,174
INFO 2026-06-08 09:47:44 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:53s. Time for last 10,000,000: 17s. Last read position: chr15:101,976,137
INFO 2026-06-08 09:48:01 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:14:10s. Time for last 10,000,000: 17s. Last read position: chr16:19,463,350
INFO 2026-06-08 09:48:18 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:27s. Time for last 10,000,000: 17s. Last read position: chr16:57,026,298
INFO 2026-06-08 09:48:36 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:45s. Time for last 10,000,000: 17s. Last read position: chr17:1,467,294
INFO 2026-06-08 09:48:53 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:15:02s. Time for last 10,000,000: 17s. Last read position: chr17:28,644,995
INFO 2026-06-08 09:49:10 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:15:19s. Time for last 10,000,000: 17s. Last read position: chr17:44,176,847
INFO 2026-06-08 09:49:29 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:38s. Time for last 10,000,000: 18s. Last read position: chr17:67,826,116
INFO 2026-06-08 09:49:49 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:58s. Time for last 10,000,000: 19s. Last read position: chr17:82,900,680
INFO 2026-06-08 09:50:06 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:16:15s. Time for last 10,000,000: 17s. Last read position: chr19:1,854,656
INFO 2026-06-08 09:50:23 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:32s. Time for last 10,000,000: 17s. Last read position: chr19:14,106,786
INFO 2026-06-08 09:50:41 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:50s. Time for last 10,000,000: 17s. Last read position: chr19:39,433,544
INFO 2026-06-08 09:51:03 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:17:12s. Time for last 10,000,000: 22s. Last read position: chr19:39,894,291
INFO 2026-06-08 09:51:27 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:17:36s. Time for last 10,000,000: 23s. Last read position: chr19:44,846,457
INFO 2026-06-08 09:51:50 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:59s. Time for last 10,000,000: 23s. Last read position: chr20:297,908
INFO 2026-06-08 09:52:13 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:18:22s. Time for last 10,000,000: 22s. Last read position: chr20:50,936,180
INFO 2026-06-08 09:52:34 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:18:43s. Time for last 10,000,000: 20s. Last read position: chr21:46,363,720
INFO 2026-06-08 09:52:56 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:19:05s. Time for last 10,000,000: 22s. Last read position: chr22:41,436,968
INFO 2026-06-08 09:53:14 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:19:23s. Time for last 10,000,000: 17s. Last read position: chrX:53,629,589
INFO 2026-06-08 09:53:33 MarkDuplicates Written 650,000,000 records. Elapsed time: 00:19:42s. Time for last 10,000,000: 19s. Last read position: */*
INFO 2026-06-08 09:53:39 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:53:39 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:53:39 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:53:39 MarkDuplicates Before output close freeMemory: 203970816; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:53:39 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:53:39 MarkDuplicates After output close freeMemory: 104179992; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:53:39 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 47.20 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory