File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/57950173b2a9ff626ad64f2a3c078c/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:23:01
                             Started mapping on |	Jun 08 09:29:36
                                    Finished on |	Jun 08 10:05:42
       Mapping speed, Million of reads per hour |	307.92

                          Number of input reads |	185265165
                      Average input read length |	264
                                    UNIQUE READS:
                   Uniquely mapped reads number |	177123088
                        Uniquely mapped reads % |	95.61%
                          Average mapped length |	264.25
                       Number of splices: Total |	201585195
            Number of splices: Annotated (sjdb) |	198739117
                       Number of splices: GT/AG |	199064305
                       Number of splices: GC/AG |	1517805
                       Number of splices: AT/AC |	188813
               Number of splices: Non-canonical |	814272
                      Mismatch rate per base, % |	0.19%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.14
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.74
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	6354857
             % of reads mapped to multiple loci |	3.43%
        Number of reads mapped to too many loci |	285892
             % of reads mapped to too many loci |	0.15%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1337620
                 % of reads unmapped: too short |	0.72%
                Number of reads unmapped: other |	163708
                     % of reads unmapped: other |	0.09%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%