Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/95ec88a9ce11301a20d4ffcb5030a5/659_ciZ-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/055d16d900aa4f5d756bd4631fe78f/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/055d16d900aa4f5d756bd4631fe78f/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_ciZ-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_ciZ-T1-TRNA-1_B23WHTKLT4_1.md.bam --METRICS_FILE 659_ciZ-T1-TRNA-1_B23WHTKLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:40:14.675 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:40:14 GMT 2026] MarkDuplicates --INPUT 659_ciZ-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_ciZ-T1-TRNA-1_B23WHTKLT4_1.md.bam --METRICS_FILE 659_ciZ-T1-TRNA-1_B23WHTKLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:40:14 GMT 2026] Executing as ?@nf-81055d16d900aa4f5d756bd4631fe78f-7071a-8lg5l on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:40:14 MarkDuplicates Start of doWork freeMemory: 105826664; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:40:14 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:40:14 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:40:18 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,320,490
INFO 2026-06-08 08:40:18 MarkDuplicates Tracking 1817 as yet unmatched pairs. 203 records in RAM.
INFO 2026-06-08 08:40:20 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 1s. Last read position: chr1:1,793,266
INFO 2026-06-08 08:40:20 MarkDuplicates Tracking 3670 as yet unmatched pairs. 474 records in RAM.
INFO 2026-06-08 08:40:22 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 2s. Last read position: chr1:6,418,852
INFO 2026-06-08 08:40:22 MarkDuplicates Tracking 4824 as yet unmatched pairs. 10 records in RAM.
INFO 2026-06-08 08:40:24 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:9,262,095
INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 6544 as yet unmatched pairs. 301 records in RAM.
INFO 2026-06-08 08:40:26 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:11,674,788
INFO 2026-06-08 08:40:26 MarkDuplicates Tracking 7683 as yet unmatched pairs. 63 records in RAM.
INFO 2026-06-08 08:40:28 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:15,725,451
INFO 2026-06-08 08:40:28 MarkDuplicates Tracking 9233 as yet unmatched pairs. 60 records in RAM.
INFO 2026-06-08 08:40:29 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:17,084,627
INFO 2026-06-08 08:40:29 MarkDuplicates Tracking 10607 as yet unmatched pairs. 174 records in RAM.
INFO 2026-06-08 08:40:32 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:19,357,440
INFO 2026-06-08 08:40:32 MarkDuplicates Tracking 12375 as yet unmatched pairs. 477 records in RAM.
INFO 2026-06-08 08:40:33 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:21,823,208
INFO 2026-06-08 08:40:33 MarkDuplicates Tracking 13344 as yet unmatched pairs. 252 records in RAM.
INFO 2026-06-08 08:40:35 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:21,876,649
INFO 2026-06-08 08:40:35 MarkDuplicates Tracking 14999 as yet unmatched pairs. 323 records in RAM.
INFO 2026-06-08 08:40:37 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:23,318,679
INFO 2026-06-08 08:40:37 MarkDuplicates Tracking 16444 as yet unmatched pairs. 390 records in RAM.
INFO 2026-06-08 08:40:39 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 2s. Last read position: chr1:25,498,335
INFO 2026-06-08 08:40:39 MarkDuplicates Tracking 17311 as yet unmatched pairs. 162 records in RAM.
INFO 2026-06-08 08:40:41 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:26,863,929
INFO 2026-06-08 08:40:41 MarkDuplicates Tracking 18504 as yet unmatched pairs. 69 records in RAM.
INFO 2026-06-08 08:40:43 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 2s. Last read position: chr1:28,480,519
INFO 2026-06-08 08:40:43 MarkDuplicates Tracking 20168 as yet unmatched pairs. 143 records in RAM.
INFO 2026-06-08 08:40:45 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:31,584,777
INFO 2026-06-08 08:40:45 MarkDuplicates Tracking 22115 as yet unmatched pairs. 629 records in RAM.
INFO 2026-06-08 08:40:46 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:32,376,479
INFO 2026-06-08 08:40:46 MarkDuplicates Tracking 22902 as yet unmatched pairs. 68 records in RAM.
INFO 2026-06-08 08:40:49 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 2s. Last read position: chr1:33,334,194
INFO 2026-06-08 08:40:49 MarkDuplicates Tracking 24474 as yet unmatched pairs. 210 records in RAM.
INFO 2026-06-08 08:40:51 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:37,483,474
INFO 2026-06-08 08:40:51 MarkDuplicates Tracking 26082 as yet unmatched pairs. 284 records in RAM.
INFO 2026-06-08 08:40:53 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:39,479,867
INFO 2026-06-08 08:40:53 MarkDuplicates Tracking 27471 as yet unmatched pairs. 563 records in RAM.
INFO 2026-06-08 08:40:55 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 2s. Last read position: chr1:42,696,910
INFO 2026-06-08 08:40:55 MarkDuplicates Tracking 28967 as yet unmatched pairs. 681 records in RAM.
INFO 2026-06-08 08:40:56 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:43,620,880
INFO 2026-06-08 08:40:56 MarkDuplicates Tracking 29883 as yet unmatched pairs. 79 records in RAM.
INFO 2026-06-08 08:40:58 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:45,515,792
INFO 2026-06-08 08:40:58 MarkDuplicates Tracking 33545 as yet unmatched pairs. 2465 records in RAM.
INFO 2026-06-08 08:40:59 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:47,183,830
INFO 2026-06-08 08:40:59 MarkDuplicates Tracking 32699 as yet unmatched pairs. 407 records in RAM.
INFO 2026-06-08 08:41:01 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:53,246,911
INFO 2026-06-08 08:41:01 MarkDuplicates Tracking 33903 as yet unmatched pairs. 8 records in RAM.
INFO 2026-06-08 08:41:03 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:59,821,912
INFO 2026-06-08 08:41:03 MarkDuplicates Tracking 35596 as yet unmatched pairs. 197 records in RAM.
INFO 2026-06-08 08:41:04 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:68,126,247
INFO 2026-06-08 08:41:04 MarkDuplicates Tracking 36797 as yet unmatched pairs. 136 records in RAM.
INFO 2026-06-08 08:41:07 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 2s. Last read position: chr1:85,582,180
INFO 2026-06-08 08:41:07 MarkDuplicates Tracking 38131 as yet unmatched pairs. 179 records in RAM.
INFO 2026-06-08 08:41:09 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:92,836,378
INFO 2026-06-08 08:41:09 MarkDuplicates Tracking 40266 as yet unmatched pairs. 1043 records in RAM.
INFO 2026-06-08 08:41:11 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 2s. Last read position: chr1:101,239,497
INFO 2026-06-08 08:41:11 MarkDuplicates Tracking 40458 as yet unmatched pairs. 71 records in RAM.
INFO 2026-06-08 08:41:12 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:110,017,975
INFO 2026-06-08 08:41:12 MarkDuplicates Tracking 41640 as yet unmatched pairs. 139 records in RAM.
INFO 2026-06-08 08:41:14 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:112,914,044
INFO 2026-06-08 08:41:14 MarkDuplicates Tracking 43069 as yet unmatched pairs. 275 records in RAM.
INFO 2026-06-08 08:41:15 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:114,739,707
INFO 2026-06-08 08:41:15 MarkDuplicates Tracking 44911 as yet unmatched pairs. 974 records in RAM.
INFO 2026-06-08 08:41:17 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:117,442,235
INFO 2026-06-08 08:41:17 MarkDuplicates Tracking 45435 as yet unmatched pairs. 114 records in RAM.
INFO 2026-06-08 08:41:19 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:119,925,493
INFO 2026-06-08 08:41:19 MarkDuplicates Tracking 46712 as yet unmatched pairs. 235 records in RAM.
INFO 2026-06-08 08:41:20 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:145,925,863
INFO 2026-06-08 08:41:20 MarkDuplicates Tracking 47505 as yet unmatched pairs. 144 records in RAM.
INFO 2026-06-08 08:41:21 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:148,550,373
INFO 2026-06-08 08:41:21 MarkDuplicates Tracking 48636 as yet unmatched pairs. 332 records in RAM.
INFO 2026-06-08 08:41:22 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:149,852,704
INFO 2026-06-08 08:41:22 MarkDuplicates Tracking 49100 as yet unmatched pairs. 99 records in RAM.
INFO 2026-06-08 08:41:24 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:150,579,209
INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 50599 as yet unmatched pairs. 503 records in RAM.
INFO 2026-06-08 08:41:25 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:151,406,150
INFO 2026-06-08 08:41:25 MarkDuplicates Tracking 51704 as yet unmatched pairs. 249 records in RAM.
INFO 2026-06-08 08:41:26 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:153,940,938
INFO 2026-06-08 08:41:26 MarkDuplicates Tracking 52811 as yet unmatched pairs. 154 records in RAM.
INFO 2026-06-08 08:41:28 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:154,259,975
INFO 2026-06-08 08:41:28 MarkDuplicates Tracking 54026 as yet unmatched pairs. 63 records in RAM.
INFO 2026-06-08 08:41:29 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:155,169,442
INFO 2026-06-08 08:41:29 MarkDuplicates Tracking 55633 as yet unmatched pairs. 345 records in RAM.
INFO 2026-06-08 08:41:31 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:155,672,655
INFO 2026-06-08 08:41:31 MarkDuplicates Tracking 56585 as yet unmatched pairs. 199 records in RAM.
INFO 2026-06-08 08:41:32 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:156,136,391
INFO 2026-06-08 08:41:32 MarkDuplicates Tracking 59703 as yet unmatched pairs. 1806 records in RAM.
INFO 2026-06-08 08:41:34 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:156,723,319
INFO 2026-06-08 08:41:34 MarkDuplicates Tracking 59404 as yet unmatched pairs. 76 records in RAM.
INFO 2026-06-08 08:41:36 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 2s. Last read position: chr1:160,325,577
INFO 2026-06-08 08:41:36 MarkDuplicates Tracking 60984 as yet unmatched pairs. 304 records in RAM.
INFO 2026-06-08 08:41:38 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:162,518,153
INFO 2026-06-08 08:41:38 MarkDuplicates Tracking 62362 as yet unmatched pairs. 285 records in RAM.
INFO 2026-06-08 08:41:39 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:169,127,287
INFO 2026-06-08 08:41:39 MarkDuplicates Tracking 64831 as yet unmatched pairs. 1457 records in RAM.
INFO 2026-06-08 08:41:42 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 2s. Last read position: chr1:171,557,971
INFO 2026-06-08 08:41:42 MarkDuplicates Tracking 64795 as yet unmatched pairs. 222 records in RAM.
INFO 2026-06-08 08:41:44 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:180,175,344
INFO 2026-06-08 08:41:44 MarkDuplicates Tracking 66547 as yet unmatched pairs. 602 records in RAM.
INFO 2026-06-08 08:41:45 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:183,633,105
INFO 2026-06-08 08:41:45 MarkDuplicates Tracking 67391 as yet unmatched pairs. 84 records in RAM.
INFO 2026-06-08 08:41:47 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 2s. Last read position: chr1:192,811,117
INFO 2026-06-08 08:41:47 MarkDuplicates Tracking 68589 as yet unmatched pairs. 51 records in RAM.
INFO 2026-06-08 08:41:49 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:201,490,238
INFO 2026-06-08 08:41:49 MarkDuplicates Tracking 70585 as yet unmatched pairs. 704 records in RAM.
INFO 2026-06-08 08:41:50 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:203,700,895
INFO 2026-06-08 08:41:50 MarkDuplicates Tracking 71228 as yet unmatched pairs. 11 records in RAM.
INFO 2026-06-08 08:41:52 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:205,718,023
INFO 2026-06-08 08:41:52 MarkDuplicates Tracking 72505 as yet unmatched pairs. 4 records in RAM.
INFO 2026-06-08 08:41:53 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:206,931,700
INFO 2026-06-08 08:41:53 MarkDuplicates Tracking 74542 as yet unmatched pairs. 928 records in RAM.
INFO 2026-06-08 08:41:55 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:207,785,615
INFO 2026-06-08 08:41:55 MarkDuplicates Tracking 75791 as yet unmatched pairs. 731 records in RAM.
INFO 2026-06-08 08:41:56 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:214,646,139
INFO 2026-06-08 08:41:56 MarkDuplicates Tracking 76540 as yet unmatched pairs. 65 records in RAM.
INFO 2026-06-08 08:41:58 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:223,752,913
INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 77686 as yet unmatched pairs. 73 records in RAM.
INFO 2026-06-08 08:41:59 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:226,402,367
INFO 2026-06-08 08:41:59 MarkDuplicates Tracking 78877 as yet unmatched pairs. 106 records in RAM.
INFO 2026-06-08 08:42:00 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:229,594,731
INFO 2026-06-08 08:42:00 MarkDuplicates Tracking 80238 as yet unmatched pairs. 55 records in RAM.
INFO 2026-06-08 08:42:02 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:234,665,154
INFO 2026-06-08 08:42:02 MarkDuplicates Tracking 81692 as yet unmatched pairs. 0 records in RAM.
INFO 2026-06-08 08:42:03 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:244,859,353
INFO 2026-06-08 08:42:03 MarkDuplicates Tracking 83703 as yet unmatched pairs. 736 records in RAM.
INFO 2026-06-08 08:42:06 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 2s. Last read position: chr2:8,731,079
INFO 2026-06-08 08:42:06 MarkDuplicates Tracking 84284 as yet unmatched pairs. 84152 records in RAM.
INFO 2026-06-08 08:42:07 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr2:15,534,574
INFO 2026-06-08 08:42:07 MarkDuplicates Tracking 85509 as yet unmatched pairs. 85376 records in RAM.
INFO 2026-06-08 08:42:08 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr2:24,693,266
INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 86797 as yet unmatched pairs. 86663 records in RAM.
INFO 2026-06-08 08:42:10 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr2:27,132,043
INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 88133 as yet unmatched pairs. 87999 records in RAM.
INFO 2026-06-08 08:42:12 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:28,783,930
INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 90759 as yet unmatched pairs. 90625 records in RAM.
INFO 2026-06-08 08:42:13 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,256
INFO 2026-06-08 08:42:13 MarkDuplicates Tracking 128083 as yet unmatched pairs. 87804 records in RAM.
INFO 2026-06-08 08:42:15 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:42:15 MarkDuplicates Tracking 567199 as yet unmatched pairs. 65400 records in RAM.
INFO 2026-06-08 08:42:17 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 710722 as yet unmatched pairs. 57959 records in RAM.
INFO 2026-06-08 08:42:19 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:38,482,187
INFO 2026-06-08 08:42:19 MarkDuplicates Tracking 750983 as yet unmatched pairs. 55095 records in RAM.
INFO 2026-06-08 08:42:20 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:43,225,161
INFO 2026-06-08 08:42:20 MarkDuplicates Tracking 750033 as yet unmatched pairs. 54145 records in RAM.
INFO 2026-06-08 08:42:22 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 2s. Last read position: chr2:47,161,760
INFO 2026-06-08 08:42:22 MarkDuplicates Tracking 748904 as yet unmatched pairs. 53016 records in RAM.
INFO 2026-06-08 08:42:24 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:54,626,075
INFO 2026-06-08 08:42:24 MarkDuplicates Tracking 747126 as yet unmatched pairs. 51237 records in RAM.
INFO 2026-06-08 08:42:26 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:54,664,513
INFO 2026-06-08 08:42:26 MarkDuplicates Tracking 745242 as yet unmatched pairs. 49353 records in RAM.
INFO 2026-06-08 08:42:28 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:61,190,638
INFO 2026-06-08 08:42:28 MarkDuplicates Tracking 743782 as yet unmatched pairs. 47891 records in RAM.
INFO 2026-06-08 08:42:29 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:65,268,624
INFO 2026-06-08 08:42:29 MarkDuplicates Tracking 743189 as yet unmatched pairs. 47298 records in RAM.
INFO 2026-06-08 08:42:31 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:71,189,929
INFO 2026-06-08 08:42:31 MarkDuplicates Tracking 741220 as yet unmatched pairs. 45326 records in RAM.
INFO 2026-06-08 08:42:33 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 2s. Last read position: chr2:74,369,437
INFO 2026-06-08 08:42:33 MarkDuplicates Tracking 740034 as yet unmatched pairs. 44140 records in RAM.
INFO 2026-06-08 08:42:35 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:85,351,684
INFO 2026-06-08 08:42:35 MarkDuplicates Tracking 738870 as yet unmatched pairs. 42969 records in RAM.
INFO 2026-06-08 08:42:36 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:88,557,759
INFO 2026-06-08 08:42:36 MarkDuplicates Tracking 737641 as yet unmatched pairs. 41740 records in RAM.
INFO 2026-06-08 08:42:38 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:96,860,866
INFO 2026-06-08 08:42:38 MarkDuplicates Tracking 736480 as yet unmatched pairs. 40579 records in RAM.
INFO 2026-06-08 08:42:40 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:101,037,572
INFO 2026-06-08 08:42:40 MarkDuplicates Tracking 735026 as yet unmatched pairs. 39124 records in RAM.
INFO 2026-06-08 08:42:41 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:108,751,897
INFO 2026-06-08 08:42:41 MarkDuplicates Tracking 734224 as yet unmatched pairs. 38322 records in RAM.
INFO 2026-06-08 08:42:43 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:110,097,553
INFO 2026-06-08 08:42:43 MarkDuplicates Tracking 732937 as yet unmatched pairs. 37034 records in RAM.
INFO 2026-06-08 08:42:44 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:113,217,958
INFO 2026-06-08 08:42:44 MarkDuplicates Tracking 732064 as yet unmatched pairs. 36161 records in RAM.
INFO 2026-06-08 08:42:45 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:127,609,584
INFO 2026-06-08 08:42:45 MarkDuplicates Tracking 730956 as yet unmatched pairs. 35049 records in RAM.
INFO 2026-06-08 08:42:47 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:135,133,960
INFO 2026-06-08 08:42:47 MarkDuplicates Tracking 729526 as yet unmatched pairs. 33614 records in RAM.
INFO 2026-06-08 08:42:48 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:152,735,035
INFO 2026-06-08 08:42:48 MarkDuplicates Tracking 728430 as yet unmatched pairs. 32512 records in RAM.
INFO 2026-06-08 08:42:50 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:162,359,080
INFO 2026-06-08 08:42:50 MarkDuplicates Tracking 727203 as yet unmatched pairs. 31283 records in RAM.
INFO 2026-06-08 08:42:52 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:171,725,918
INFO 2026-06-08 08:42:52 MarkDuplicates Tracking 726100 as yet unmatched pairs. 30180 records in RAM.
INFO 2026-06-08 08:42:53 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:174,141,984
INFO 2026-06-08 08:42:53 MarkDuplicates Tracking 724669 as yet unmatched pairs. 28737 records in RAM.
INFO 2026-06-08 08:42:54 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:178,503,767
INFO 2026-06-08 08:42:54 MarkDuplicates Tracking 723415 as yet unmatched pairs. 27483 records in RAM.
INFO 2026-06-08 08:42:56 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:182,928,890
INFO 2026-06-08 08:42:56 MarkDuplicates Tracking 722809 as yet unmatched pairs. 26868 records in RAM.
INFO 2026-06-08 08:42:58 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:188,992,887
INFO 2026-06-08 08:42:58 MarkDuplicates Tracking 721517 as yet unmatched pairs. 25572 records in RAM.
INFO 2026-06-08 08:42:59 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:189,563,770
INFO 2026-06-08 08:42:59 MarkDuplicates Tracking 722529 as yet unmatched pairs. 26582 records in RAM.
INFO 2026-06-08 08:43:01 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:190,983,673
INFO 2026-06-08 08:43:01 MarkDuplicates Tracking 718591 as yet unmatched pairs. 22644 records in RAM.
INFO 2026-06-08 08:43:02 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:197,494,192
INFO 2026-06-08 08:43:02 MarkDuplicates Tracking 717796 as yet unmatched pairs. 21849 records in RAM.
INFO 2026-06-08 08:43:04 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:201,205,893
INFO 2026-06-08 08:43:04 MarkDuplicates Tracking 715676 as yet unmatched pairs. 19725 records in RAM.
INFO 2026-06-08 08:43:05 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:206,004,524
INFO 2026-06-08 08:43:05 MarkDuplicates Tracking 714784 as yet unmatched pairs. 18832 records in RAM.
INFO 2026-06-08 08:43:07 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:208,248,369
INFO 2026-06-08 08:43:07 MarkDuplicates Tracking 713813 as yet unmatched pairs. 17860 records in RAM.
INFO 2026-06-08 08:43:08 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:215,404,593
INFO 2026-06-08 08:43:08 MarkDuplicates Tracking 712610 as yet unmatched pairs. 16656 records in RAM.
INFO 2026-06-08 08:43:09 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:216,501,345
INFO 2026-06-08 08:43:09 MarkDuplicates Tracking 710862 as yet unmatched pairs. 14908 records in RAM.
INFO 2026-06-08 08:43:11 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:218,276,067
INFO 2026-06-08 08:43:11 MarkDuplicates Tracking 711595 as yet unmatched pairs. 15641 records in RAM.
INFO 2026-06-08 08:43:12 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:219,055,621
INFO 2026-06-08 08:43:12 MarkDuplicates Tracking 708465 as yet unmatched pairs. 12509 records in RAM.
INFO 2026-06-08 08:43:14 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:219,420,928
INFO 2026-06-08 08:43:14 MarkDuplicates Tracking 707488 as yet unmatched pairs. 11532 records in RAM.
INFO 2026-06-08 08:43:16 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 2s. Last read position: chr2:224,497,778
INFO 2026-06-08 08:43:16 MarkDuplicates Tracking 705480 as yet unmatched pairs. 9518 records in RAM.
INFO 2026-06-08 08:43:18 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:230,450,214
INFO 2026-06-08 08:43:18 MarkDuplicates Tracking 704258 as yet unmatched pairs. 8295 records in RAM.
INFO 2026-06-08 08:43:19 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:231,463,210
INFO 2026-06-08 08:43:19 MarkDuplicates Tracking 703559 as yet unmatched pairs. 7595 records in RAM.
INFO 2026-06-08 08:43:21 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:233,837,563
INFO 2026-06-08 08:43:21 MarkDuplicates Tracking 701236 as yet unmatched pairs. 5272 records in RAM.
INFO 2026-06-08 08:43:22 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:237,546,608
INFO 2026-06-08 08:43:22 MarkDuplicates Tracking 700247 as yet unmatched pairs. 4282 records in RAM.
INFO 2026-06-08 08:43:24 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:240,590,883
INFO 2026-06-08 08:43:24 MarkDuplicates Tracking 698416 as yet unmatched pairs. 2451 records in RAM.
INFO 2026-06-08 08:43:26 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 2s. Last read position: chr2:241,343,006
INFO 2026-06-08 08:43:26 MarkDuplicates Tracking 697135 as yet unmatched pairs. 1170 records in RAM.
INFO 2026-06-08 08:43:28 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 2s. Last read position: chr3:9,757,139
INFO 2026-06-08 08:43:28 MarkDuplicates Tracking 695303 as yet unmatched pairs. 38628 records in RAM.
INFO 2026-06-08 08:43:30 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr3:12,839,444
INFO 2026-06-08 08:43:30 MarkDuplicates Tracking 695552 as yet unmatched pairs. 38877 records in RAM.
INFO 2026-06-08 08:43:31 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr3:23,807,262
INFO 2026-06-08 08:43:31 MarkDuplicates Tracking 692251 as yet unmatched pairs. 35575 records in RAM.
INFO 2026-06-08 08:43:33 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:33,836,172
INFO 2026-06-08 08:43:33 MarkDuplicates Tracking 691275 as yet unmatched pairs. 34599 records in RAM.
INFO 2026-06-08 08:43:34 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr3:39,410,816
INFO 2026-06-08 08:43:34 MarkDuplicates Tracking 691230 as yet unmatched pairs. 34554 records in RAM.
INFO 2026-06-08 08:43:36 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:42,194,815
INFO 2026-06-08 08:43:36 MarkDuplicates Tracking 688571 as yet unmatched pairs. 31887 records in RAM.
INFO 2026-06-08 08:43:37 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr3:46,992,481
INFO 2026-06-08 08:43:37 MarkDuplicates Tracking 687708 as yet unmatched pairs. 31024 records in RAM.
INFO 2026-06-08 08:43:39 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:47,852,928
INFO 2026-06-08 08:43:39 MarkDuplicates Tracking 686111 as yet unmatched pairs. 29427 records in RAM.
INFO 2026-06-08 08:43:40 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:48,599,634
INFO 2026-06-08 08:43:40 MarkDuplicates Tracking 684717 as yet unmatched pairs. 28033 records in RAM.
INFO 2026-06-08 08:43:42 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr3:49,122,054
INFO 2026-06-08 08:43:42 MarkDuplicates Tracking 682787 as yet unmatched pairs. 26103 records in RAM.
INFO 2026-06-08 08:43:44 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:49,813,802
INFO 2026-06-08 08:43:44 MarkDuplicates Tracking 681148 as yet unmatched pairs. 24464 records in RAM.
INFO 2026-06-08 08:43:45 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:51,933,505
INFO 2026-06-08 08:43:45 MarkDuplicates Tracking 679723 as yet unmatched pairs. 23037 records in RAM.
INFO 2026-06-08 08:43:46 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:52,516,217
INFO 2026-06-08 08:43:46 MarkDuplicates Tracking 678395 as yet unmatched pairs. 21707 records in RAM.
INFO 2026-06-08 08:43:48 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:57,556,735
INFO 2026-06-08 08:43:48 MarkDuplicates Tracking 676718 as yet unmatched pairs. 20013 records in RAM.
INFO 2026-06-08 08:43:50 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr3:58,170,574
INFO 2026-06-08 08:43:50 MarkDuplicates Tracking 675809 as yet unmatched pairs. 19104 records in RAM.
INFO 2026-06-08 08:43:51 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:72,929,137
INFO 2026-06-08 08:43:51 MarkDuplicates Tracking 673941 as yet unmatched pairs. 17233 records in RAM.
INFO 2026-06-08 08:43:53 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:101,576,547
INFO 2026-06-08 08:43:53 MarkDuplicates Tracking 672855 as yet unmatched pairs. 16146 records in RAM.
INFO 2026-06-08 08:43:54 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:113,789,730
INFO 2026-06-08 08:43:54 MarkDuplicates Tracking 671504 as yet unmatched pairs. 14793 records in RAM.
INFO 2026-06-08 08:43:57 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 2s. Last read position: chr3:122,700,737
INFO 2026-06-08 08:43:57 MarkDuplicates Tracking 670407 as yet unmatched pairs. 13691 records in RAM.
INFO 2026-06-08 08:43:59 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:126,103,671
INFO 2026-06-08 08:43:59 MarkDuplicates Tracking 668897 as yet unmatched pairs. 12180 records in RAM.
INFO 2026-06-08 08:44:00 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:129,272,340
INFO 2026-06-08 08:44:00 MarkDuplicates Tracking 667411 as yet unmatched pairs. 10691 records in RAM.
INFO 2026-06-08 08:44:02 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr3:136,357,784
INFO 2026-06-08 08:44:02 MarkDuplicates Tracking 666098 as yet unmatched pairs. 9377 records in RAM.
INFO 2026-06-08 08:44:03 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:146,517,098
INFO 2026-06-08 08:44:03 MarkDuplicates Tracking 665359 as yet unmatched pairs. 8635 records in RAM.
INFO 2026-06-08 08:44:04 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:158,537,164
INFO 2026-06-08 08:44:04 MarkDuplicates Tracking 663742 as yet unmatched pairs. 7017 records in RAM.
INFO 2026-06-08 08:44:06 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 2s. Last read position: chr3:171,692,403
INFO 2026-06-08 08:44:06 MarkDuplicates Tracking 662578 as yet unmatched pairs. 5853 records in RAM.
INFO 2026-06-08 08:44:09 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 2s. Last read position: chr3:183,982,826
INFO 2026-06-08 08:44:09 MarkDuplicates Tracking 661530 as yet unmatched pairs. 4804 records in RAM.
INFO 2026-06-08 08:44:11 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:185,417,593
INFO 2026-06-08 08:44:11 MarkDuplicates Tracking 660184 as yet unmatched pairs. 3458 records in RAM.
INFO 2026-06-08 08:44:12 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:189,994,270
INFO 2026-06-08 08:44:12 MarkDuplicates Tracking 659143 as yet unmatched pairs. 2417 records in RAM.
INFO 2026-06-08 08:44:14 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:195,782,845
INFO 2026-06-08 08:44:14 MarkDuplicates Tracking 658990 as yet unmatched pairs. 2263 records in RAM.
INFO 2026-06-08 08:44:15 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:197,675,187
INFO 2026-06-08 08:44:15 MarkDuplicates Tracking 657064 as yet unmatched pairs. 336 records in RAM.
INFO 2026-06-08 08:44:17 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr4:1,241,506
INFO 2026-06-08 08:44:17 MarkDuplicates Tracking 655553 as yet unmatched pairs. 23167 records in RAM.
INFO 2026-06-08 08:44:18 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr4:2,931,375
INFO 2026-06-08 08:44:18 MarkDuplicates Tracking 654455 as yet unmatched pairs. 22069 records in RAM.
INFO 2026-06-08 08:44:20 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr4:6,862,231
INFO 2026-06-08 08:44:20 MarkDuplicates Tracking 652547 as yet unmatched pairs. 20161 records in RAM.
INFO 2026-06-08 08:44:21 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr4:15,980,455
INFO 2026-06-08 08:44:21 MarkDuplicates Tracking 651507 as yet unmatched pairs. 19121 records in RAM.
INFO 2026-06-08 08:44:23 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr4:30,722,998
INFO 2026-06-08 08:44:23 MarkDuplicates Tracking 649859 as yet unmatched pairs. 17469 records in RAM.
INFO 2026-06-08 08:44:24 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr4:39,904,084
INFO 2026-06-08 08:44:24 MarkDuplicates Tracking 648759 as yet unmatched pairs. 16368 records in RAM.
INFO 2026-06-08 08:44:26 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr4:51,913,324
INFO 2026-06-08 08:44:26 MarkDuplicates Tracking 647295 as yet unmatched pairs. 14903 records in RAM.
INFO 2026-06-08 08:44:27 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr4:61,733,092
INFO 2026-06-08 08:44:27 MarkDuplicates Tracking 645847 as yet unmatched pairs. 13455 records in RAM.
INFO 2026-06-08 08:44:29 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr4:75,914,947
INFO 2026-06-08 08:44:29 MarkDuplicates Tracking 644614 as yet unmatched pairs. 12221 records in RAM.
INFO 2026-06-08 08:44:30 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr4:79,983,886
INFO 2026-06-08 08:44:30 MarkDuplicates Tracking 644175 as yet unmatched pairs. 11782 records in RAM.
INFO 2026-06-08 08:44:32 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr4:87,337,353
INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 642660 as yet unmatched pairs. 10265 records in RAM.
INFO 2026-06-08 08:44:33 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr4:102,606,686
INFO 2026-06-08 08:44:33 MarkDuplicates Tracking 640871 as yet unmatched pairs. 8476 records in RAM.
INFO 2026-06-08 08:44:35 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr4:113,902,928
INFO 2026-06-08 08:44:35 MarkDuplicates Tracking 639497 as yet unmatched pairs. 7102 records in RAM.
INFO 2026-06-08 08:44:36 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr4:122,743,000
INFO 2026-06-08 08:44:36 MarkDuplicates Tracking 638064 as yet unmatched pairs. 5669 records in RAM.
INFO 2026-06-08 08:44:38 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr4:143,540,399
INFO 2026-06-08 08:44:38 MarkDuplicates Tracking 636938 as yet unmatched pairs. 4542 records in RAM.
INFO 2026-06-08 08:44:39 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr4:151,174,670
INFO 2026-06-08 08:44:39 MarkDuplicates Tracking 636345 as yet unmatched pairs. 3948 records in RAM.
INFO 2026-06-08 08:44:41 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr4:168,457,988
INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 634642 as yet unmatched pairs. 2244 records in RAM.
INFO 2026-06-08 08:44:42 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr4:185,651,782
INFO 2026-06-08 08:44:42 MarkDuplicates Tracking 633457 as yet unmatched pairs. 1056 records in RAM.
INFO 2026-06-08 08:44:44 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr5:612,365
INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 631899 as yet unmatched pairs. 33287 records in RAM.
INFO 2026-06-08 08:44:45 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr5:10,748,175
INFO 2026-06-08 08:44:45 MarkDuplicates Tracking 630676 as yet unmatched pairs. 32061 records in RAM.
INFO 2026-06-08 08:44:48 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 2s. Last read position: chr5:17,354,159
INFO 2026-06-08 08:44:48 MarkDuplicates Tracking 629506 as yet unmatched pairs. 30884 records in RAM.
INFO 2026-06-08 08:44:49 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr5:37,931,497
INFO 2026-06-08 08:44:49 MarkDuplicates Tracking 628159 as yet unmatched pairs. 29533 records in RAM.
INFO 2026-06-08 08:44:51 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr5:43,702,710
INFO 2026-06-08 08:44:51 MarkDuplicates Tracking 627257 as yet unmatched pairs. 28631 records in RAM.
INFO 2026-06-08 08:44:52 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr5:65,451,475
INFO 2026-06-08 08:44:52 MarkDuplicates Tracking 625857 as yet unmatched pairs. 27229 records in RAM.
INFO 2026-06-08 08:44:54 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr5:71,079,825
INFO 2026-06-08 08:44:54 MarkDuplicates Tracking 624957 as yet unmatched pairs. 26329 records in RAM.
INFO 2026-06-08 08:44:56 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr5:76,658,466
INFO 2026-06-08 08:44:56 MarkDuplicates Tracking 623595 as yet unmatched pairs. 24964 records in RAM.
INFO 2026-06-08 08:44:58 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr5:83,490,305
INFO 2026-06-08 08:44:58 MarkDuplicates Tracking 622279 as yet unmatched pairs. 23646 records in RAM.
INFO 2026-06-08 08:44:59 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr5:96,767,966
INFO 2026-06-08 08:44:59 MarkDuplicates Tracking 621407 as yet unmatched pairs. 22772 records in RAM.
INFO 2026-06-08 08:45:01 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr5:116,447,328
INFO 2026-06-08 08:45:01 MarkDuplicates Tracking 619759 as yet unmatched pairs. 21123 records in RAM.
INFO 2026-06-08 08:45:02 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr5:132,271,872
INFO 2026-06-08 08:45:02 MarkDuplicates Tracking 618440 as yet unmatched pairs. 19802 records in RAM.
INFO 2026-06-08 08:45:04 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr5:135,353,019
INFO 2026-06-08 08:45:04 MarkDuplicates Tracking 617403 as yet unmatched pairs. 18765 records in RAM.
INFO 2026-06-08 08:45:05 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr5:138,561,729
INFO 2026-06-08 08:45:05 MarkDuplicates Tracking 616108 as yet unmatched pairs. 17469 records in RAM.
INFO 2026-06-08 08:45:07 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr5:140,641,584
INFO 2026-06-08 08:45:07 MarkDuplicates Tracking 614367 as yet unmatched pairs. 15707 records in RAM.
INFO 2026-06-08 08:45:09 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr5:141,865,325
INFO 2026-06-08 08:45:09 MarkDuplicates Tracking 613570 as yet unmatched pairs. 14883 records in RAM.
INFO 2026-06-08 08:45:10 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:150,050,377
INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 612229 as yet unmatched pairs. 13539 records in RAM.
INFO 2026-06-08 08:45:12 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,597
INFO 2026-06-08 08:45:12 MarkDuplicates Tracking 615816 as yet unmatched pairs. 17109 records in RAM.
INFO 2026-06-08 08:45:13 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr5:150,407,303
INFO 2026-06-08 08:45:13 MarkDuplicates Tracking 609761 as yet unmatched pairs. 11053 records in RAM.
INFO 2026-06-08 08:45:15 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:151,803,901
INFO 2026-06-08 08:45:15 MarkDuplicates Tracking 608458 as yet unmatched pairs. 9750 records in RAM.
INFO 2026-06-08 08:45:17 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:168,469,104
INFO 2026-06-08 08:45:17 MarkDuplicates Tracking 606831 as yet unmatched pairs. 8120 records in RAM.
INFO 2026-06-08 08:45:18 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr5:171,392,925
INFO 2026-06-08 08:45:18 MarkDuplicates Tracking 609270 as yet unmatched pairs. 10559 records in RAM.
INFO 2026-06-08 08:45:20 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr5:176,530,133
INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 604652 as yet unmatched pairs. 5941 records in RAM.
INFO 2026-06-08 08:45:21 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr5:178,056,007
INFO 2026-06-08 08:45:21 MarkDuplicates Tracking 603192 as yet unmatched pairs. 4475 records in RAM.
INFO 2026-06-08 08:45:23 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr5:179,801,590
INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 602491 as yet unmatched pairs. 3774 records in RAM.
INFO 2026-06-08 08:45:24 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr5:179,833,745
INFO 2026-06-08 08:45:24 MarkDuplicates Tracking 603421 as yet unmatched pairs. 4704 records in RAM.
INFO 2026-06-08 08:45:26 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:181,238,170
INFO 2026-06-08 08:45:26 MarkDuplicates Tracking 602169 as yet unmatched pairs. 3451 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr6:3,323,967
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 597773 as yet unmatched pairs. 42002 records in RAM.
INFO 2026-06-08 08:45:31 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 3s. Last read position: chr6:7,584,125
INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 596727 as yet unmatched pairs. 40955 records in RAM.
INFO 2026-06-08 08:45:33 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 2s. Last read position: chr6:17,764,628
INFO 2026-06-08 08:45:33 MarkDuplicates Tracking 595498 as yet unmatched pairs. 39724 records in RAM.
INFO 2026-06-08 08:45:35 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr6:26,124,421
INFO 2026-06-08 08:45:35 MarkDuplicates Tracking 594193 as yet unmatched pairs. 38417 records in RAM.
INFO 2026-06-08 08:45:36 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr6:27,808,454
INFO 2026-06-08 08:45:36 MarkDuplicates Tracking 592962 as yet unmatched pairs. 37186 records in RAM.
INFO 2026-06-08 08:45:38 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr6:29,942,845
INFO 2026-06-08 08:45:38 MarkDuplicates Tracking 592765 as yet unmatched pairs. 36989 records in RAM.
INFO 2026-06-08 08:45:39 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr6:30,670,825
INFO 2026-06-08 08:45:39 MarkDuplicates Tracking 589746 as yet unmatched pairs. 33970 records in RAM.
INFO 2026-06-08 08:45:41 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr6:31,270,339
INFO 2026-06-08 08:45:41 MarkDuplicates Tracking 588799 as yet unmatched pairs. 33022 records in RAM.
INFO 2026-06-08 08:45:42 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr6:31,635,685
INFO 2026-06-08 08:45:42 MarkDuplicates Tracking 587224 as yet unmatched pairs. 31447 records in RAM.
INFO 2026-06-08 08:45:44 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr6:31,781,734
INFO 2026-06-08 08:45:44 MarkDuplicates Tracking 585646 as yet unmatched pairs. 29869 records in RAM.
INFO 2026-06-08 08:45:45 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:31,896,784
INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 584339 as yet unmatched pairs. 28561 records in RAM.
INFO 2026-06-08 08:45:47 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr6:32,127,131
INFO 2026-06-08 08:45:47 MarkDuplicates Tracking 583433 as yet unmatched pairs. 27655 records in RAM.
INFO 2026-06-08 08:45:48 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr6:32,974,502
INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 581946 as yet unmatched pairs. 26168 records in RAM.
INFO 2026-06-08 08:45:49 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr6:33,313,254
INFO 2026-06-08 08:45:49 MarkDuplicates Tracking 581565 as yet unmatched pairs. 25786 records in RAM.
INFO 2026-06-08 08:45:51 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:34,240,867
INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 579171 as yet unmatched pairs. 23390 records in RAM.
INFO 2026-06-08 08:45:53 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr6:36,517,807
INFO 2026-06-08 08:45:53 MarkDuplicates Tracking 577498 as yet unmatched pairs. 21717 records in RAM.
INFO 2026-06-08 08:45:54 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:42,232,845
INFO 2026-06-08 08:45:54 MarkDuplicates Tracking 576194 as yet unmatched pairs. 20413 records in RAM.
INFO 2026-06-08 08:45:56 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:43,520,953
INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 574633 as yet unmatched pairs. 18851 records in RAM.
INFO 2026-06-08 08:45:59 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 3s. Last read position: chr6:47,253,267
INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 573550 as yet unmatched pairs. 17766 records in RAM.
INFO 2026-06-08 08:46:01 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:56,515,557
INFO 2026-06-08 08:46:01 MarkDuplicates Tracking 572156 as yet unmatched pairs. 16372 records in RAM.
INFO 2026-06-08 08:46:02 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr6:70,566,944
INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 570700 as yet unmatched pairs. 14916 records in RAM.
INFO 2026-06-08 08:46:04 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr6:80,065,462
INFO 2026-06-08 08:46:04 MarkDuplicates Tracking 569448 as yet unmatched pairs. 13660 records in RAM.
INFO 2026-06-08 08:46:05 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:89,081,309
INFO 2026-06-08 08:46:05 MarkDuplicates Tracking 569024 as yet unmatched pairs. 13236 records in RAM.
INFO 2026-06-08 08:46:07 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr6:106,971,430
INFO 2026-06-08 08:46:07 MarkDuplicates Tracking 568831 as yet unmatched pairs. 13042 records in RAM.
INFO 2026-06-08 08:46:08 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr6:111,719,843
INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 565624 as yet unmatched pairs. 9835 records in RAM.
INFO 2026-06-08 08:46:09 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr6:128,397,592
INFO 2026-06-08 08:46:09 MarkDuplicates Tracking 564453 as yet unmatched pairs. 8664 records in RAM.
INFO 2026-06-08 08:46:11 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr6:136,389,457
INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 563131 as yet unmatched pairs. 7341 records in RAM.
INFO 2026-06-08 08:46:12 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr6:143,765,454
INFO 2026-06-08 08:46:12 MarkDuplicates Tracking 562057 as yet unmatched pairs. 6267 records in RAM.
INFO 2026-06-08 08:46:14 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:151,351,190
INFO 2026-06-08 08:46:14 MarkDuplicates Tracking 560544 as yet unmatched pairs. 4753 records in RAM.
INFO 2026-06-08 08:46:15 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:158,589,748
INFO 2026-06-08 08:46:15 MarkDuplicates Tracking 559798 as yet unmatched pairs. 4007 records in RAM.
INFO 2026-06-08 08:46:17 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:159,225,618
INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 557952 as yet unmatched pairs. 2160 records in RAM.
INFO 2026-06-08 08:46:18 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr6:167,911,285
INFO 2026-06-08 08:46:18 MarkDuplicates Tracking 556784 as yet unmatched pairs. 990 records in RAM.
INFO 2026-06-08 08:46:20 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr7:1,155,494
INFO 2026-06-08 08:46:20 MarkDuplicates Tracking 555163 as yet unmatched pairs. 40444 records in RAM.
INFO 2026-06-08 08:46:22 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr7:2,938,716
INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 553426 as yet unmatched pairs. 38707 records in RAM.
INFO 2026-06-08 08:46:23 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr7:5,501,246
INFO 2026-06-08 08:46:23 MarkDuplicates Tracking 551660 as yet unmatched pairs. 36939 records in RAM.
INFO 2026-06-08 08:46:25 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,519
INFO 2026-06-08 08:46:25 MarkDuplicates Tracking 555405 as yet unmatched pairs. 40684 records in RAM.
INFO 2026-06-08 08:46:27 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr7:6,026,796
INFO 2026-06-08 08:46:27 MarkDuplicates Tracking 549325 as yet unmatched pairs. 34603 records in RAM.
INFO 2026-06-08 08:46:29 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 2s. Last read position: chr7:16,792,882
INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 551082 as yet unmatched pairs. 36358 records in RAM.
INFO 2026-06-08 08:46:31 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr7:26,152,954
INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 546787 as yet unmatched pairs. 32062 records in RAM.
INFO 2026-06-08 08:46:32 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr7:33,000,212
INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 545441 as yet unmatched pairs. 30716 records in RAM.
INFO 2026-06-08 08:46:34 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr7:44,104,901
INFO 2026-06-08 08:46:34 MarkDuplicates Tracking 544045 as yet unmatched pairs. 29317 records in RAM.
INFO 2026-06-08 08:46:35 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr7:47,297,151
INFO 2026-06-08 08:46:35 MarkDuplicates Tracking 542575 as yet unmatched pairs. 27847 records in RAM.
INFO 2026-06-08 08:46:37 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr7:64,348,955
INFO 2026-06-08 08:46:37 MarkDuplicates Tracking 541175 as yet unmatched pairs. 26447 records in RAM.
INFO 2026-06-08 08:46:38 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr7:73,298,213
INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 540301 as yet unmatched pairs. 25572 records in RAM.
INFO 2026-06-08 08:46:40 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:74,748,058
INFO 2026-06-08 08:46:40 MarkDuplicates Tracking 538894 as yet unmatched pairs. 24165 records in RAM.
INFO 2026-06-08 08:46:41 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:76,302,783
INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 538742 as yet unmatched pairs. 24012 records in RAM.
INFO 2026-06-08 08:46:42 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:87,934,447
INFO 2026-06-08 08:46:42 MarkDuplicates Tracking 536651 as yet unmatched pairs. 21921 records in RAM.
INFO 2026-06-08 08:46:44 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr7:94,401,566
INFO 2026-06-08 08:46:44 MarkDuplicates Tracking 536290 as yet unmatched pairs. 21560 records in RAM.
INFO 2026-06-08 08:46:46 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr7:98,193,374
INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 534243 as yet unmatched pairs. 19513 records in RAM.
INFO 2026-06-08 08:46:47 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr7:99,648,208
INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 532745 as yet unmatched pairs. 18015 records in RAM.
INFO 2026-06-08 08:46:49 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:100,613,574
INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 531157 as yet unmatched pairs. 16426 records in RAM.
INFO 2026-06-08 08:46:50 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr7:100,956,485
INFO 2026-06-08 08:46:50 MarkDuplicates Tracking 530281 as yet unmatched pairs. 15549 records in RAM.
INFO 2026-06-08 08:46:51 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,107
INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 529306 as yet unmatched pairs. 14569 records in RAM.
INFO 2026-06-08 08:46:53 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,158
INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 529290 as yet unmatched pairs. 14553 records in RAM.
INFO 2026-06-08 08:46:54 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr7:101,040,096
INFO 2026-06-08 08:46:54 MarkDuplicates Tracking 528331 as yet unmatched pairs. 13594 records in RAM.
INFO 2026-06-08 08:46:57 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 3s. Last read position: chr7:102,568,032
INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 527280 as yet unmatched pairs. 12542 records in RAM.
INFO 2026-06-08 08:46:59 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:107,236,535
INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 526060 as yet unmatched pairs. 11322 records in RAM.
INFO 2026-06-08 08:47:01 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:116,758,499
INFO 2026-06-08 08:47:01 MarkDuplicates Tracking 525550 as yet unmatched pairs. 10810 records in RAM.
INFO 2026-06-08 08:47:02 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:127,721,291
INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 524516 as yet unmatched pairs. 9775 records in RAM.
INFO 2026-06-08 08:48:03 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 61s. Last read position: chr7:129,839,237
INFO 2026-06-08 08:48:03 MarkDuplicates Tracking 523077 as yet unmatched pairs. 8336 records in RAM.
INFO 2026-06-08 08:48:05 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr7:138,460,715
INFO 2026-06-08 08:48:05 MarkDuplicates Tracking 521620 as yet unmatched pairs. 6874 records in RAM.
INFO 2026-06-08 08:48:06 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 1s. Last read position: chr7:142,157,950
INFO 2026-06-08 08:48:06 MarkDuplicates Tracking 520499 as yet unmatched pairs. 5753 records in RAM.
INFO 2026-06-08 08:48:08 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr7:144,269,149
INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 519215 as yet unmatched pairs. 4468 records in RAM.
INFO 2026-06-08 08:48:09 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr7:150,371,795
INFO 2026-06-08 08:48:09 MarkDuplicates Tracking 518306 as yet unmatched pairs. 3558 records in RAM.
INFO 2026-06-08 08:48:12 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 2s. Last read position: chr7:151,215,651
INFO 2026-06-08 08:48:12 MarkDuplicates Tracking 516715 as yet unmatched pairs. 1967 records in RAM.
INFO 2026-06-08 08:48:13 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr7:158,167,192
INFO 2026-06-08 08:48:13 MarkDuplicates Tracking 515432 as yet unmatched pairs. 684 records in RAM.
INFO 2026-06-08 08:48:15 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr8:11,845,137
INFO 2026-06-08 08:48:15 MarkDuplicates Tracking 515059 as yet unmatched pairs. 36517 records in RAM.
INFO 2026-06-08 08:48:17 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr8:18,804,878
INFO 2026-06-08 08:48:17 MarkDuplicates Tracking 512421 as yet unmatched pairs. 33879 records in RAM.
INFO 2026-06-08 08:48:18 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr8:22,617,754
INFO 2026-06-08 08:48:18 MarkDuplicates Tracking 511565 as yet unmatched pairs. 33023 records in RAM.
INFO 2026-06-08 08:48:20 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr8:27,454,536
INFO 2026-06-08 08:48:20 MarkDuplicates Tracking 509743 as yet unmatched pairs. 31200 records in RAM.
INFO 2026-06-08 08:48:21 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr8:30,786,278
INFO 2026-06-08 08:48:21 MarkDuplicates Tracking 508930 as yet unmatched pairs. 30387 records in RAM.
INFO 2026-06-08 08:48:22 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 1s. Last read position: chr8:38,238,141
INFO 2026-06-08 08:48:22 MarkDuplicates Tracking 506737 as yet unmatched pairs. 28194 records in RAM.
INFO 2026-06-08 08:48:24 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr8:38,997,099
INFO 2026-06-08 08:48:24 MarkDuplicates Tracking 506283 as yet unmatched pairs. 27739 records in RAM.
INFO 2026-06-08 08:48:25 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr8:47,737,850
INFO 2026-06-08 08:48:25 MarkDuplicates Tracking 503926 as yet unmatched pairs. 25381 records in RAM.
INFO 2026-06-08 08:48:27 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr8:54,147,598
INFO 2026-06-08 08:48:27 MarkDuplicates Tracking 502535 as yet unmatched pairs. 23990 records in RAM.
INFO 2026-06-08 08:48:29 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr8:61,644,615
INFO 2026-06-08 08:48:29 MarkDuplicates Tracking 501870 as yet unmatched pairs. 23325 records in RAM.
INFO 2026-06-08 08:48:30 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr8:70,574,976
INFO 2026-06-08 08:48:30 MarkDuplicates Tracking 500390 as yet unmatched pairs. 21845 records in RAM.
INFO 2026-06-08 08:48:32 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr8:82,291,618
INFO 2026-06-08 08:48:32 MarkDuplicates Tracking 499037 as yet unmatched pairs. 20492 records in RAM.
INFO 2026-06-08 08:48:34 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 2s. Last read position: chr8:94,668,041
INFO 2026-06-08 08:48:34 MarkDuplicates Tracking 497923 as yet unmatched pairs. 19377 records in RAM.
INFO 2026-06-08 08:48:36 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr8:100,259,156
INFO 2026-06-08 08:48:36 MarkDuplicates Tracking 496745 as yet unmatched pairs. 18199 records in RAM.
INFO 2026-06-08 08:48:38 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr8:100,718,237
INFO 2026-06-08 08:48:38 MarkDuplicates Tracking 497746 as yet unmatched pairs. 19200 records in RAM.
INFO 2026-06-08 08:48:39 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr8:103,329,703
INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 493910 as yet unmatched pairs. 15364 records in RAM.
INFO 2026-06-08 08:48:41 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr8:119,208,551
INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 495857 as yet unmatched pairs. 17308 records in RAM.
INFO 2026-06-08 08:48:42 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr8:127,736,146
INFO 2026-06-08 08:48:42 MarkDuplicates Tracking 491146 as yet unmatched pairs. 12595 records in RAM.
INFO 2026-06-08 08:48:44 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr8:141,427,757
INFO 2026-06-08 08:48:44 MarkDuplicates Tracking 489782 as yet unmatched pairs. 11231 records in RAM.
INFO 2026-06-08 08:48:45 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr8:143,726,386
INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 488450 as yet unmatched pairs. 9897 records in RAM.
INFO 2026-06-08 08:48:46 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,591
INFO 2026-06-08 08:48:46 MarkDuplicates Tracking 487388 as yet unmatched pairs. 8835 records in RAM.
INFO 2026-06-08 08:48:48 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr8:143,870,009
INFO 2026-06-08 08:48:48 MarkDuplicates Tracking 486753 as yet unmatched pairs. 8200 records in RAM.
INFO 2026-06-08 08:48:49 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr8:143,921,169
INFO 2026-06-08 08:48:49 MarkDuplicates Tracking 485236 as yet unmatched pairs. 6682 records in RAM.
INFO 2026-06-08 08:48:50 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr8:143,934,361
INFO 2026-06-08 08:48:50 MarkDuplicates Tracking 482934 as yet unmatched pairs. 4380 records in RAM.
INFO 2026-06-08 08:48:52 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr8:144,264,479
INFO 2026-06-08 08:48:52 MarkDuplicates Tracking 481073 as yet unmatched pairs. 2519 records in RAM.
INFO 2026-06-08 08:48:54 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr8:144,527,562
INFO 2026-06-08 08:48:54 MarkDuplicates Tracking 479292 as yet unmatched pairs. 737 records in RAM.
INFO 2026-06-08 08:48:55 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr9:5,920,861
INFO 2026-06-08 08:48:55 MarkDuplicates Tracking 478077 as yet unmatched pairs. 29733 records in RAM.
INFO 2026-06-08 08:48:57 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr9:21,333,788
INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 476800 as yet unmatched pairs. 28449 records in RAM.
INFO 2026-06-08 08:48:59 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr9:34,709,534
INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 475552 as yet unmatched pairs. 27197 records in RAM.
INFO 2026-06-08 08:49:00 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr9:35,751,173
INFO 2026-06-08 08:49:00 MarkDuplicates Tracking 473883 as yet unmatched pairs. 25527 records in RAM.
INFO 2026-06-08 08:49:01 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr9:69,251,165
INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 473289 as yet unmatched pairs. 24929 records in RAM.
INFO 2026-06-08 08:49:03 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr9:77,922,227
INFO 2026-06-08 08:49:03 MarkDuplicates Tracking 471635 as yet unmatched pairs. 23275 records in RAM.
INFO 2026-06-08 08:49:04 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr9:89,002,054
INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 470107 as yet unmatched pairs. 21740 records in RAM.
INFO 2026-06-08 08:49:07 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 2s. Last read position: chr9:93,556,390
INFO 2026-06-08 08:49:07 MarkDuplicates Tracking 469544 as yet unmatched pairs. 21177 records in RAM.
INFO 2026-06-08 08:49:09 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr9:98,823,297
INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 467365 as yet unmatched pairs. 18998 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr9:107,487,358
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 466562 as yet unmatched pairs. 18194 records in RAM.
INFO 2026-06-08 08:49:12 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr9:112,252,698
INFO 2026-06-08 08:49:12 MarkDuplicates Tracking 464890 as yet unmatched pairs. 16521 records in RAM.
INFO 2026-06-08 08:49:14 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr9:120,714,080
INFO 2026-06-08 08:49:14 MarkDuplicates Tracking 463245 as yet unmatched pairs. 14875 records in RAM.
INFO 2026-06-08 08:49:15 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr9:123,010,384
INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 461873 as yet unmatched pairs. 13502 records in RAM.
INFO 2026-06-08 08:49:17 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr9:127,449,696
INFO 2026-06-08 08:49:17 MarkDuplicates Tracking 462653 as yet unmatched pairs. 14280 records in RAM.
INFO 2026-06-08 08:49:18 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr9:128,178,387
INFO 2026-06-08 08:49:18 MarkDuplicates Tracking 459263 as yet unmatched pairs. 10890 records in RAM.
INFO 2026-06-08 08:49:20 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr9:128,691,887
INFO 2026-06-08 08:49:20 MarkDuplicates Tracking 459523 as yet unmatched pairs. 11150 records in RAM.
INFO 2026-06-08 08:49:21 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr9:130,432,489
INFO 2026-06-08 08:49:21 MarkDuplicates Tracking 456094 as yet unmatched pairs. 7716 records in RAM.
INFO 2026-06-08 08:49:23 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr9:131,860,596
INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 454704 as yet unmatched pairs. 6325 records in RAM.
INFO 2026-06-08 08:49:24 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr9:134,045,302
INFO 2026-06-08 08:49:24 MarkDuplicates Tracking 453680 as yet unmatched pairs. 5300 records in RAM.
INFO 2026-06-08 08:49:26 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr9:136,475,631
INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 452024 as yet unmatched pairs. 3644 records in RAM.
INFO 2026-06-08 08:49:28 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr9:137,015,480
INFO 2026-06-08 08:49:28 MarkDuplicates Tracking 450369 as yet unmatched pairs. 1988 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr9:137,605,713
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 448971 as yet unmatched pairs. 589 records in RAM.
INFO 2026-06-08 08:49:31 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr10:5,393,738
INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 447554 as yet unmatched pairs. 32209 records in RAM.
INFO 2026-06-08 08:49:32 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr10:11,955,280
INFO 2026-06-08 08:49:32 MarkDuplicates Tracking 446425 as yet unmatched pairs. 31079 records in RAM.
INFO 2026-06-08 08:49:34 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr10:22,318,996
INFO 2026-06-08 08:49:34 MarkDuplicates Tracking 445230 as yet unmatched pairs. 29884 records in RAM.
INFO 2026-06-08 08:49:35 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr10:27,210,920
INFO 2026-06-08 08:49:35 MarkDuplicates Tracking 443942 as yet unmatched pairs. 28596 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr10:32,017,258
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 444651 as yet unmatched pairs. 29304 records in RAM.
INFO 2026-06-08 08:49:38 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr10:32,039,422
INFO 2026-06-08 08:49:38 MarkDuplicates Tracking 443631 as yet unmatched pairs. 28284 records in RAM.
INFO 2026-06-08 08:49:40 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr10:35,516,593
INFO 2026-06-08 08:49:40 MarkDuplicates Tracking 440652 as yet unmatched pairs. 25303 records in RAM.
INFO 2026-06-08 08:49:41 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr10:46,010,344
INFO 2026-06-08 08:49:41 MarkDuplicates Tracking 439779 as yet unmatched pairs. 24429 records in RAM.
INFO 2026-06-08 08:49:43 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr10:58,196,070
INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 438385 as yet unmatched pairs. 23035 records in RAM.
INFO 2026-06-08 08:49:45 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr10:68,339,121
INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 437114 as yet unmatched pairs. 21760 records in RAM.
INFO 2026-06-08 08:49:47 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr10:70,884,033
INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 436333 as yet unmatched pairs. 20979 records in RAM.
INFO 2026-06-08 08:49:50 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 2s. Last read position: chr10:73,792,384
INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 434754 as yet unmatched pairs. 19398 records in RAM.
INFO 2026-06-08 08:49:51 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr10:78,035,393
INFO 2026-06-08 08:49:51 MarkDuplicates Tracking 435012 as yet unmatched pairs. 19656 records in RAM.
INFO 2026-06-08 08:49:53 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr10:80,176,117
INFO 2026-06-08 08:49:53 MarkDuplicates Tracking 432392 as yet unmatched pairs. 17035 records in RAM.
INFO 2026-06-08 08:49:54 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr10:87,933,231
INFO 2026-06-08 08:49:54 MarkDuplicates Tracking 431228 as yet unmatched pairs. 15871 records in RAM.
INFO 2026-06-08 08:49:56 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr10:93,389,029
INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 429671 as yet unmatched pairs. 14313 records in RAM.
INFO 2026-06-08 08:49:57 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr10:96,527,212
INFO 2026-06-08 08:49:57 MarkDuplicates Tracking 430037 as yet unmatched pairs. 14679 records in RAM.
INFO 2026-06-08 08:49:59 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr10:99,397,498
INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 426962 as yet unmatched pairs. 11604 records in RAM.
INFO 2026-06-08 08:50:00 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr10:102,001,971
INFO 2026-06-08 08:50:00 MarkDuplicates Tracking 425482 as yet unmatched pairs. 10122 records in RAM.
INFO 2026-06-08 08:50:02 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr10:103,246,230
INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 423610 as yet unmatched pairs. 8249 records in RAM.
INFO 2026-06-08 08:50:03 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr10:104,057,029
INFO 2026-06-08 08:50:03 MarkDuplicates Tracking 422691 as yet unmatched pairs. 7329 records in RAM.
INFO 2026-06-08 08:50:06 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 2s. Last read position: chr10:112,417,856
INFO 2026-06-08 08:50:06 MarkDuplicates Tracking 422061 as yet unmatched pairs. 6696 records in RAM.
INFO 2026-06-08 08:50:07 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr10:117,285,172
INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 420438 as yet unmatched pairs. 5073 records in RAM.
INFO 2026-06-08 08:50:09 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr10:120,873,856
INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 418570 as yet unmatched pairs. 3205 records in RAM.
INFO 2026-06-08 08:50:10 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr10:124,831,421
INFO 2026-06-08 08:50:10 MarkDuplicates Tracking 417236 as yet unmatched pairs. 1867 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr10:133,281,358
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 415930 as yet unmatched pairs. 561 records in RAM.
INFO 2026-06-08 08:50:14 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 2s. Last read position: chr11:396,897
INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 414652 as yet unmatched pairs. 62665 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr11:722,404
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 412937 as yet unmatched pairs. 60950 records in RAM.
INFO 2026-06-08 08:50:17 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr11:1,075,827
INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 412682 as yet unmatched pairs. 60694 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr11:1,090,868
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 410429 as yet unmatched pairs. 58441 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr11:1,183,225
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 408425 as yet unmatched pairs. 56437 records in RAM.
INFO 2026-06-08 08:50:22 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr11:1,187,628
INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 407976 as yet unmatched pairs. 55986 records in RAM.
INFO 2026-06-08 08:50:23 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr11:1,191,777
INFO 2026-06-08 08:50:23 MarkDuplicates Tracking 408224 as yet unmatched pairs. 56233 records in RAM.
INFO 2026-06-08 08:50:25 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr11:1,242,807
INFO 2026-06-08 08:50:25 MarkDuplicates Tracking 404930 as yet unmatched pairs. 52939 records in RAM.
INFO 2026-06-08 08:50:26 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,780
INFO 2026-06-08 08:50:26 MarkDuplicates Tracking 405225 as yet unmatched pairs. 53232 records in RAM.
INFO 2026-06-08 08:50:28 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 2s. Last read position: chr11:1,753,637
INFO 2026-06-08 08:50:28 MarkDuplicates Tracking 404565 as yet unmatched pairs. 52572 records in RAM.
INFO 2026-06-08 08:50:30 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr11:3,029,066
INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 402214 as yet unmatched pairs. 50221 records in RAM.
INFO 2026-06-08 08:50:32 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr11:6,618,775
INFO 2026-06-08 08:50:32 MarkDuplicates Tracking 400897 as yet unmatched pairs. 48904 records in RAM.
INFO 2026-06-08 08:50:33 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr11:9,585,258
INFO 2026-06-08 08:50:33 MarkDuplicates Tracking 399120 as yet unmatched pairs. 47127 records in RAM.
INFO 2026-06-08 08:50:35 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr11:12,281,063
INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 397840 as yet unmatched pairs. 45847 records in RAM.
INFO 2026-06-08 08:50:36 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr11:17,526,383
INFO 2026-06-08 08:50:36 MarkDuplicates Tracking 396783 as yet unmatched pairs. 44789 records in RAM.
INFO 2026-06-08 08:50:38 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr11:32,593,899
INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 396051 as yet unmatched pairs. 44057 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr11:35,214,850
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 394326 as yet unmatched pairs. 42332 records in RAM.
INFO 2026-06-08 08:50:42 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr11:46,312,854
INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 393945 as yet unmatched pairs. 41951 records in RAM.
INFO 2026-06-08 08:50:44 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 2s. Last read position: chr11:47,332,612
INFO 2026-06-08 08:50:44 MarkDuplicates Tracking 391285 as yet unmatched pairs. 39291 records in RAM.
INFO 2026-06-08 08:50:46 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr11:57,611,822
INFO 2026-06-08 08:50:46 MarkDuplicates Tracking 389784 as yet unmatched pairs. 37788 records in RAM.
INFO 2026-06-08 08:50:47 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:59,806,737
INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 388416 as yet unmatched pairs. 36420 records in RAM.
INFO 2026-06-08 08:50:49 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr11:61,965,401
INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 391262 as yet unmatched pairs. 39263 records in RAM.
INFO 2026-06-08 08:50:50 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:62,522,360
INFO 2026-06-08 08:50:50 MarkDuplicates Tracking 386841 as yet unmatched pairs. 34842 records in RAM.
INFO 2026-06-08 08:50:52 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr11:62,528,785
INFO 2026-06-08 08:50:52 MarkDuplicates Tracking 385794 as yet unmatched pairs. 33795 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:62,571,078
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 384152 as yet unmatched pairs. 32153 records in RAM.
INFO 2026-06-08 08:50:55 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr11:62,856,337
INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 382224 as yet unmatched pairs. 30225 records in RAM.
INFO 2026-06-08 08:50:56 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:64,246,491
INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 380883 as yet unmatched pairs. 28884 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:64,906,161
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 378918 as yet unmatched pairs. 26918 records in RAM.
INFO 2026-06-08 08:50:59 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:65,525,230
INFO 2026-06-08 08:50:59 MarkDuplicates Tracking 377403 as yet unmatched pairs. 25403 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 3s. Last read position: chr11:65,654,804
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 376728 as yet unmatched pairs. 24727 records in RAM.
INFO 2026-06-08 08:51:04 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr11:66,268,671
INFO 2026-06-08 08:51:04 MarkDuplicates Tracking 374348 as yet unmatched pairs. 22342 records in RAM.
INFO 2026-06-08 08:51:06 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr11:66,858,431
INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 372936 as yet unmatched pairs. 20929 records in RAM.
INFO 2026-06-08 08:51:07 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr11:67,438,767
INFO 2026-06-08 08:51:07 MarkDuplicates Tracking 371232 as yet unmatched pairs. 19223 records in RAM.
INFO 2026-06-08 08:51:09 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:68,042,957
INFO 2026-06-08 08:51:09 MarkDuplicates Tracking 369633 as yet unmatched pairs. 17624 records in RAM.
INFO 2026-06-08 08:51:10 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:68,438,637
INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 368180 as yet unmatched pairs. 16171 records in RAM.
INFO 2026-06-08 08:51:12 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr11:69,648,111
INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 368430 as yet unmatched pairs. 16421 records in RAM.
INFO 2026-06-08 08:51:13 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:72,012,914
INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 365115 as yet unmatched pairs. 13106 records in RAM.
INFO 2026-06-08 08:51:15 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr11:73,362,728
INFO 2026-06-08 08:51:15 MarkDuplicates Tracking 363289 as yet unmatched pairs. 11279 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:76,458,262
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 361834 as yet unmatched pairs. 9823 records in RAM.
INFO 2026-06-08 08:51:18 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:78,079,638
INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 360873 as yet unmatched pairs. 8862 records in RAM.
INFO 2026-06-08 08:51:19 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr11:86,808,574
INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 359165 as yet unmatched pairs. 7154 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:102,398,755
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 358094 as yet unmatched pairs. 6081 records in RAM.
INFO 2026-06-08 08:51:22 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:116,875,259
INFO 2026-06-08 08:51:22 MarkDuplicates Tracking 356673 as yet unmatched pairs. 4660 records in RAM.
INFO 2026-06-08 08:51:24 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:118,768,296
INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 355604 as yet unmatched pairs. 3591 records in RAM.
INFO 2026-06-08 08:51:26 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:123,058,654
INFO 2026-06-08 08:51:26 MarkDuplicates Tracking 354689 as yet unmatched pairs. 2676 records in RAM.
INFO 2026-06-08 08:51:27 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr11:129,436,821
INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 352645 as yet unmatched pairs. 632 records in RAM.
INFO 2026-06-08 08:51:30 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 2s. Last read position: chr12:884,874
INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 351824 as yet unmatched pairs. 44273 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr12:6,327,771
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 350493 as yet unmatched pairs. 42941 records in RAM.
INFO 2026-06-08 08:51:33 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr12:6,750,225
INFO 2026-06-08 08:51:33 MarkDuplicates Tracking 348914 as yet unmatched pairs. 41362 records in RAM.
INFO 2026-06-08 08:51:35 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr12:7,099,949
INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 347526 as yet unmatched pairs. 39974 records in RAM.
INFO 2026-06-08 08:51:36 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr12:11,171,405
INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 346249 as yet unmatched pairs. 38696 records in RAM.
INFO 2026-06-08 08:51:38 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr12:14,788,987
INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 345068 as yet unmatched pairs. 37515 records in RAM.
INFO 2026-06-08 08:51:40 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr12:25,245,307
INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 343668 as yet unmatched pairs. 36115 records in RAM.
INFO 2026-06-08 08:51:41 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr12:39,369,854
INFO 2026-06-08 08:51:41 MarkDuplicates Tracking 342361 as yet unmatched pairs. 34808 records in RAM.
INFO 2026-06-08 08:51:43 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr12:48,144,107
INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 341014 as yet unmatched pairs. 33460 records in RAM.
INFO 2026-06-08 08:51:44 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,260
INFO 2026-06-08 08:51:44 MarkDuplicates Tracking 340848 as yet unmatched pairs. 33293 records in RAM.
INFO 2026-06-08 08:51:45 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr12:49,759,260
INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 341246 as yet unmatched pairs. 33691 records in RAM.
INFO 2026-06-08 08:51:47 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr12:51,976,510
INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 337701 as yet unmatched pairs. 30120 records in RAM.
INFO 2026-06-08 08:51:49 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr12:52,949,403
INFO 2026-06-08 08:51:49 MarkDuplicates Tracking 336676 as yet unmatched pairs. 29095 records in RAM.
INFO 2026-06-08 08:51:50 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr12:53,443,472
INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 335437 as yet unmatched pairs. 27856 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr12:54,280,822
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 335120 as yet unmatched pairs. 27539 records in RAM.
INFO 2026-06-08 08:51:54 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 2s. Last read position: chr12:55,902,339
INFO 2026-06-08 08:51:54 MarkDuplicates Tracking 332653 as yet unmatched pairs. 25072 records in RAM.
INFO 2026-06-08 08:51:56 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 2s. Last read position: chr12:56,160,545
INFO 2026-06-08 08:51:56 MarkDuplicates Tracking 335255 as yet unmatched pairs. 27673 records in RAM.
INFO 2026-06-08 08:51:58 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr12:56,642,782
INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 330508 as yet unmatched pairs. 22926 records in RAM.
INFO 2026-06-08 08:51:59 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr12:57,096,932
INFO 2026-06-08 08:51:59 MarkDuplicates Tracking 330092 as yet unmatched pairs. 22510 records in RAM.
INFO 2026-06-08 08:52:01 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr12:57,194,391
INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 327861 as yet unmatched pairs. 20279 records in RAM.
INFO 2026-06-08 08:52:02 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr12:57,715,956
INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 326538 as yet unmatched pairs. 18956 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr12:66,145,845
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 326399 as yet unmatched pairs. 18817 records in RAM.
INFO 2026-06-08 08:52:05 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr12:71,125,211
INFO 2026-06-08 08:52:05 MarkDuplicates Tracking 326878 as yet unmatched pairs. 19296 records in RAM.
INFO 2026-06-08 08:52:07 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr12:79,934,753
INFO 2026-06-08 08:52:07 MarkDuplicates Tracking 323017 as yet unmatched pairs. 15433 records in RAM.
INFO 2026-06-08 08:52:08 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr12:95,210,904
INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 321816 as yet unmatched pairs. 14232 records in RAM.
INFO 2026-06-08 08:52:10 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr12:103,930,549
INFO 2026-06-08 08:52:10 MarkDuplicates Tracking 320686 as yet unmatched pairs. 13102 records in RAM.
INFO 2026-06-08 08:52:11 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr12:108,562,617
INFO 2026-06-08 08:52:11 MarkDuplicates Tracking 319224 as yet unmatched pairs. 11639 records in RAM.
INFO 2026-06-08 08:52:13 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:111,362,909
INFO 2026-06-08 08:52:13 MarkDuplicates Tracking 318901 as yet unmatched pairs. 11315 records in RAM.
INFO 2026-06-08 08:52:14 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr12:112,908,646
INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 316998 as yet unmatched pairs. 9411 records in RAM.
INFO 2026-06-08 08:52:16 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr12:118,016,787
INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 315099 as yet unmatched pairs. 7512 records in RAM.
INFO 2026-06-08 08:52:17 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr12:120,222,600
INFO 2026-06-08 08:52:17 MarkDuplicates Tracking 313836 as yet unmatched pairs. 6249 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr12:122,133,415
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 313418 as yet unmatched pairs. 5831 records in RAM.
INFO 2026-06-08 08:52:21 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 2s. Last read position: chr12:124,012,466
INFO 2026-06-08 08:52:21 MarkDuplicates Tracking 311007 as yet unmatched pairs. 3419 records in RAM.
INFO 2026-06-08 08:52:22 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr12:130,875,629
INFO 2026-06-08 08:52:22 MarkDuplicates Tracking 309993 as yet unmatched pairs. 2403 records in RAM.
INFO 2026-06-08 08:52:25 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 2s. Last read position: chr12:132,796,640
INFO 2026-06-08 08:52:25 MarkDuplicates Tracking 307875 as yet unmatched pairs. 284 records in RAM.
INFO 2026-06-08 08:52:27 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr13:24,426,535
INFO 2026-06-08 08:52:27 MarkDuplicates Tracking 307025 as yet unmatched pairs. 9082 records in RAM.
INFO 2026-06-08 08:52:29 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr13:32,239,259
INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 305721 as yet unmatched pairs. 7778 records in RAM.
INFO 2026-06-08 08:52:30 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr13:44,574,530
INFO 2026-06-08 08:52:30 MarkDuplicates Tracking 304525 as yet unmatched pairs. 6582 records in RAM.
INFO 2026-06-08 08:52:32 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr13:49,549,528
INFO 2026-06-08 08:52:32 MarkDuplicates Tracking 303360 as yet unmatched pairs. 5417 records in RAM.
INFO 2026-06-08 08:52:33 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr13:75,834,320
INFO 2026-06-08 08:52:33 MarkDuplicates Tracking 302136 as yet unmatched pairs. 4193 records in RAM.
INFO 2026-06-08 08:52:35 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr13:99,529,530
INFO 2026-06-08 08:52:35 MarkDuplicates Tracking 300915 as yet unmatched pairs. 2970 records in RAM.
INFO 2026-06-08 08:52:37 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr13:110,503,891
INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 299493 as yet unmatched pairs. 1548 records in RAM.
INFO 2026-06-08 08:52:38 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr14:20,368,477
INFO 2026-06-08 08:52:38 MarkDuplicates Tracking 298119 as yet unmatched pairs. 22609 records in RAM.
INFO 2026-06-08 08:52:40 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr14:22,845,740
INFO 2026-06-08 08:52:40 MarkDuplicates Tracking 296586 as yet unmatched pairs. 21076 records in RAM.
INFO 2026-06-08 08:52:42 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr14:24,166,128
INFO 2026-06-08 08:52:42 MarkDuplicates Tracking 295539 as yet unmatched pairs. 20029 records in RAM.
INFO 2026-06-08 08:52:43 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr14:34,774,357
INFO 2026-06-08 08:52:43 MarkDuplicates Tracking 293866 as yet unmatched pairs. 18356 records in RAM.
INFO 2026-06-08 08:52:45 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr14:50,118,447
INFO 2026-06-08 08:52:45 MarkDuplicates Tracking 292742 as yet unmatched pairs. 17232 records in RAM.
INFO 2026-06-08 08:52:46 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr14:57,391,393
INFO 2026-06-08 08:52:46 MarkDuplicates Tracking 291435 as yet unmatched pairs. 15925 records in RAM.
INFO 2026-06-08 08:52:48 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr14:64,729,016
INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 290140 as yet unmatched pairs. 14630 records in RAM.
INFO 2026-06-08 08:52:49 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr14:69,770,504
INFO 2026-06-08 08:52:49 MarkDuplicates Tracking 288966 as yet unmatched pairs. 13455 records in RAM.
INFO 2026-06-08 08:52:51 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr14:74,892,950
INFO 2026-06-08 08:52:51 MarkDuplicates Tracking 287685 as yet unmatched pairs. 12168 records in RAM.
INFO 2026-06-08 08:52:52 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr14:90,401,261
INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 287662 as yet unmatched pairs. 12141 records in RAM.
INFO 2026-06-08 08:52:54 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 2s. Last read position: chr14:95,213,222
INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 285009 as yet unmatched pairs. 9488 records in RAM.
INFO 2026-06-08 08:52:56 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 2s. Last read position: chr14:102,041,571
INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 283866 as yet unmatched pairs. 8338 records in RAM.
INFO 2026-06-08 08:52:58 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr14:104,701,607
INFO 2026-06-08 08:52:58 MarkDuplicates Tracking 282581 as yet unmatched pairs. 7048 records in RAM.
INFO 2026-06-08 08:52:59 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr14:104,947,018
INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 280991 as yet unmatched pairs. 5458 records in RAM.
INFO 2026-06-08 08:53:01 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr14:105,587,612
INFO 2026-06-08 08:53:01 MarkDuplicates Tracking 285533 as yet unmatched pairs. 9977 records in RAM.
INFO 2026-06-08 08:53:02 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,143
INFO 2026-06-08 08:53:02 MarkDuplicates Tracking 284714 as yet unmatched pairs. 9158 records in RAM.
INFO 2026-06-08 08:53:04 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr14:105,708,568
INFO 2026-06-08 08:53:04 MarkDuplicates Tracking 277547 as yet unmatched pairs. 1991 records in RAM.
INFO 2026-06-08 08:53:05 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr14:105,855,754
INFO 2026-06-08 08:53:05 MarkDuplicates Tracking 277004 as yet unmatched pairs. 1448 records in RAM.
INFO 2026-06-08 08:53:07 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr15:28,321,434
INFO 2026-06-08 08:53:07 MarkDuplicates Tracking 274669 as yet unmatched pairs. 23827 records in RAM.
INFO 2026-06-08 08:53:08 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr15:34,146,832
INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 273617 as yet unmatched pairs. 22775 records in RAM.
INFO 2026-06-08 08:53:10 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr15:40,351,057
INFO 2026-06-08 08:53:10 MarkDuplicates Tracking 273709 as yet unmatched pairs. 22867 records in RAM.
INFO 2026-06-08 08:53:11 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr15:41,764,925
INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 270941 as yet unmatched pairs. 20097 records in RAM.
INFO 2026-06-08 08:53:13 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr15:43,598,244
INFO 2026-06-08 08:53:13 MarkDuplicates Tracking 269970 as yet unmatched pairs. 19126 records in RAM.
INFO 2026-06-08 08:53:14 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr15:44,651,599
INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 268617 as yet unmatched pairs. 17773 records in RAM.
INFO 2026-06-08 08:53:15 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr15:50,643,370
INFO 2026-06-08 08:53:15 MarkDuplicates Tracking 267321 as yet unmatched pairs. 16477 records in RAM.
INFO 2026-06-08 08:53:17 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr15:57,243,472
INFO 2026-06-08 08:53:17 MarkDuplicates Tracking 266614 as yet unmatched pairs. 15769 records in RAM.
INFO 2026-06-08 08:53:18 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr15:60,382,384
INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 265809 as yet unmatched pairs. 14964 records in RAM.
INFO 2026-06-08 08:53:20 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr15:64,072,976
INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 263869 as yet unmatched pairs. 13023 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr15:66,500,143
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 264844 as yet unmatched pairs. 13998 records in RAM.
INFO 2026-06-08 08:53:23 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr15:70,666,767
INFO 2026-06-08 08:53:23 MarkDuplicates Tracking 260750 as yet unmatched pairs. 9904 records in RAM.
INFO 2026-06-08 08:53:25 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr15:74,033,286
INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 259817 as yet unmatched pairs. 8970 records in RAM.
INFO 2026-06-08 08:53:26 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr15:75,479,902
INFO 2026-06-08 08:53:26 MarkDuplicates Tracking 257962 as yet unmatched pairs. 7115 records in RAM.
INFO 2026-06-08 08:53:27 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr15:78,894,819
INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 257179 as yet unmatched pairs. 6332 records in RAM.
INFO 2026-06-08 08:53:29 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr15:84,687,624
INFO 2026-06-08 08:53:29 MarkDuplicates Tracking 256633 as yet unmatched pairs. 5786 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr15:89,652,782
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 254385 as yet unmatched pairs. 3538 records in RAM.
INFO 2026-06-08 08:53:32 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr15:90,891,583
INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 252727 as yet unmatched pairs. 1880 records in RAM.
INFO 2026-06-08 08:53:34 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr15:100,973,934
INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 251303 as yet unmatched pairs. 454 records in RAM.
INFO 2026-06-08 08:53:35 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr16:670,234
INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 249581 as yet unmatched pairs. 44475 records in RAM.
INFO 2026-06-08 08:53:37 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr16:1,827,515
INFO 2026-06-08 08:53:37 MarkDuplicates Tracking 247904 as yet unmatched pairs. 42797 records in RAM.
INFO 2026-06-08 08:53:38 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr16:2,519,264
INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 246465 as yet unmatched pairs. 41358 records in RAM.
INFO 2026-06-08 08:53:40 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr16:3,027,973
INFO 2026-06-08 08:53:40 MarkDuplicates Tracking 244847 as yet unmatched pairs. 39740 records in RAM.
INFO 2026-06-08 08:53:42 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr16:8,894,787
INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 243375 as yet unmatched pairs. 38268 records in RAM.
INFO 2026-06-08 08:53:43 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr16:14,765,046
INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 242307 as yet unmatched pairs. 37200 records in RAM.
INFO 2026-06-08 08:53:44 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr16:15,031,888
INFO 2026-06-08 08:53:44 MarkDuplicates Tracking 241545 as yet unmatched pairs. 36438 records in RAM.
INFO 2026-06-08 08:53:46 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr16:15,721,589
INFO 2026-06-08 08:53:46 MarkDuplicates Tracking 241343 as yet unmatched pairs. 36236 records in RAM.
INFO 2026-06-08 08:53:48 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 2s. Last read position: chr16:15,949,664
INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 239118 as yet unmatched pairs. 34011 records in RAM.
INFO 2026-06-08 08:53:49 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr16:16,340,351
INFO 2026-06-08 08:53:49 MarkDuplicates Tracking 238709 as yet unmatched pairs. 33602 records in RAM.
INFO 2026-06-08 08:53:50 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr16:18,351,207
INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 238649 as yet unmatched pairs. 33542 records in RAM.
INFO 2026-06-08 08:53:51 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr16:18,783,004
INFO 2026-06-08 08:53:51 MarkDuplicates Tracking 241154 as yet unmatched pairs. 36047 records in RAM.
INFO 2026-06-08 08:53:53 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr16:19,115,628
INFO 2026-06-08 08:53:53 MarkDuplicates Tracking 236757 as yet unmatched pairs. 31650 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr16:21,405,230
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 235892 as yet unmatched pairs. 30784 records in RAM.
INFO 2026-06-08 08:53:56 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr16:21,838,544
INFO 2026-06-08 08:53:56 MarkDuplicates Tracking 234877 as yet unmatched pairs. 29769 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr16:22,480,872
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 234219 as yet unmatched pairs. 29111 records in RAM.
INFO 2026-06-08 08:53:58 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr16:23,581,144
INFO 2026-06-08 08:53:58 MarkDuplicates Tracking 234375 as yet unmatched pairs. 29267 records in RAM.
INFO 2026-06-08 08:54:00 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr16:27,677,889
INFO 2026-06-08 08:54:00 MarkDuplicates Tracking 232439 as yet unmatched pairs. 27331 records in RAM.
INFO 2026-06-08 08:54:01 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr16:28,538,025
INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 231501 as yet unmatched pairs. 26393 records in RAM.
INFO 2026-06-08 08:54:03 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr16:28,835,555
INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 230753 as yet unmatched pairs. 25643 records in RAM.
INFO 2026-06-08 08:54:04 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr16:29,454,019
INFO 2026-06-08 08:54:04 MarkDuplicates Tracking 231308 as yet unmatched pairs. 26198 records in RAM.
INFO 2026-06-08 08:54:06 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr16:29,806,880
INFO 2026-06-08 08:54:06 MarkDuplicates Tracking 229179 as yet unmatched pairs. 24069 records in RAM.
INFO 2026-06-08 08:54:07 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr16:29,895,264
INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 227319 as yet unmatched pairs. 22207 records in RAM.
INFO 2026-06-08 08:54:08 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr16:30,070,148
INFO 2026-06-08 08:54:08 MarkDuplicates Tracking 228494 as yet unmatched pairs. 23382 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr16:30,225,558
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 224772 as yet unmatched pairs. 19660 records in RAM.
INFO 2026-06-08 08:54:12 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr16:30,724,189
INFO 2026-06-08 08:54:12 MarkDuplicates Tracking 223740 as yet unmatched pairs. 18628 records in RAM.
INFO 2026-06-08 08:54:13 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr16:31,275,584
INFO 2026-06-08 08:54:13 MarkDuplicates Tracking 222120 as yet unmatched pairs. 17008 records in RAM.
INFO 2026-06-08 08:54:14 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr16:51,646,345
INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 221071 as yet unmatched pairs. 15959 records in RAM.
INFO 2026-06-08 08:54:16 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr16:56,682,548
INFO 2026-06-08 08:54:16 MarkDuplicates Tracking 220474 as yet unmatched pairs. 15362 records in RAM.
INFO 2026-06-08 08:54:18 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr16:58,523,402
INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 218211 as yet unmatched pairs. 13099 records in RAM.
INFO 2026-06-08 08:54:19 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr16:67,200,622
INFO 2026-06-08 08:54:19 MarkDuplicates Tracking 216533 as yet unmatched pairs. 11421 records in RAM.
INFO 2026-06-08 08:54:20 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr16:68,233,853
INFO 2026-06-08 08:54:20 MarkDuplicates Tracking 215246 as yet unmatched pairs. 10133 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:69,718,379
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 214558 as yet unmatched pairs. 9445 records in RAM.
INFO 2026-06-08 08:54:24 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:71,681,751
INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 212414 as yet unmatched pairs. 7301 records in RAM.
INFO 2026-06-08 08:54:26 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr16:75,242,715
INFO 2026-06-08 08:54:26 MarkDuplicates Tracking 211543 as yet unmatched pairs. 6430 records in RAM.
INFO 2026-06-08 08:54:27 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr16:84,977,107
INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 210265 as yet unmatched pairs. 5151 records in RAM.
INFO 2026-06-08 08:54:29 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:88,646,146
INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 210091 as yet unmatched pairs. 4972 records in RAM.
INFO 2026-06-08 08:54:30 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:89,561,034
INFO 2026-06-08 08:54:30 MarkDuplicates Tracking 208286 as yet unmatched pairs. 3166 records in RAM.
INFO 2026-06-08 08:54:32 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr17:979,550
INFO 2026-06-08 08:54:32 MarkDuplicates Tracking 204867 as yet unmatched pairs. 59707 records in RAM.
INFO 2026-06-08 08:54:33 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr17:1,733,673
INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 203406 as yet unmatched pairs. 58246 records in RAM.
INFO 2026-06-08 08:54:35 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr17:4,545,615
INFO 2026-06-08 08:54:35 MarkDuplicates Tracking 202087 as yet unmatched pairs. 56926 records in RAM.
INFO 2026-06-08 08:54:37 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr17:5,408,849
INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 200499 as yet unmatched pairs. 55338 records in RAM.
INFO 2026-06-08 08:54:38 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr17:7,390,662
INFO 2026-06-08 08:54:38 MarkDuplicates Tracking 199111 as yet unmatched pairs. 53950 records in RAM.
INFO 2026-06-08 08:54:39 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr17:7,851,343
INFO 2026-06-08 08:54:39 MarkDuplicates Tracking 197888 as yet unmatched pairs. 52727 records in RAM.
INFO 2026-06-08 08:54:41 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr17:15,651,263
INFO 2026-06-08 08:54:41 MarkDuplicates Tracking 196726 as yet unmatched pairs. 51565 records in RAM.
INFO 2026-06-08 08:56:43 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:16:26s. Time for last 1,000,000: 121s. Last read position: chr17:18,184,755
INFO 2026-06-08 08:56:43 MarkDuplicates Tracking 195382 as yet unmatched pairs. 50221 records in RAM.
INFO 2026-06-08 08:56:45 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:16:29s. Time for last 1,000,000: 2s. Last read position: chr17:27,645,865
INFO 2026-06-08 08:56:45 MarkDuplicates Tracking 194210 as yet unmatched pairs. 49049 records in RAM.
INFO 2026-06-08 08:56:46 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:16:30s. Time for last 1,000,000: 1s. Last read position: chr17:28,759,063
INFO 2026-06-08 08:56:46 MarkDuplicates Tracking 192632 as yet unmatched pairs. 47471 records in RAM.
INFO 2026-06-08 08:56:48 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:16:32s. Time for last 1,000,000: 1s. Last read position: chr17:30,956,348
INFO 2026-06-08 08:56:48 MarkDuplicates Tracking 191143 as yet unmatched pairs. 45982 records in RAM.
INFO 2026-06-08 08:56:49 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:16:33s. Time for last 1,000,000: 1s. Last read position: chr17:35,265,686
INFO 2026-06-08 08:56:49 MarkDuplicates Tracking 189967 as yet unmatched pairs. 44805 records in RAM.
INFO 2026-06-08 08:56:51 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:16:34s. Time for last 1,000,000: 1s. Last read position: chr17:37,632,284
INFO 2026-06-08 08:56:51 MarkDuplicates Tracking 188765 as yet unmatched pairs. 43602 records in RAM.
INFO 2026-06-08 08:56:52 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:16:36s. Time for last 1,000,000: 1s. Last read position: chr17:38,850,439
INFO 2026-06-08 08:56:52 MarkDuplicates Tracking 191934 as yet unmatched pairs. 46771 records in RAM.
INFO 2026-06-08 08:56:54 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:16:37s. Time for last 1,000,000: 1s. Last read position: chr17:39,700,290
INFO 2026-06-08 08:56:54 MarkDuplicates Tracking 187783 as yet unmatched pairs. 42620 records in RAM.
INFO 2026-06-08 08:56:55 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:16:39s. Time for last 1,000,000: 1s. Last read position: chr17:39,726,963
INFO 2026-06-08 08:56:55 MarkDuplicates Tracking 186234 as yet unmatched pairs. 41071 records in RAM.
INFO 2026-06-08 08:56:57 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:16:40s. Time for last 1,000,000: 1s. Last read position: chr17:40,479,679
INFO 2026-06-08 08:56:57 MarkDuplicates Tracking 183873 as yet unmatched pairs. 38710 records in RAM.
INFO 2026-06-08 08:56:58 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:16:42s. Time for last 1,000,000: 1s. Last read position: chr17:41,763,123
INFO 2026-06-08 08:56:58 MarkDuplicates Tracking 182302 as yet unmatched pairs. 37139 records in RAM.
INFO 2026-06-08 08:57:00 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:16:43s. Time for last 1,000,000: 1s. Last read position: chr17:42,554,414
INFO 2026-06-08 08:57:00 MarkDuplicates Tracking 180181 as yet unmatched pairs. 35018 records in RAM.
INFO 2026-06-08 08:57:01 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 1s. Last read position: chr17:43,528,478
INFO 2026-06-08 08:57:01 MarkDuplicates Tracking 178856 as yet unmatched pairs. 33693 records in RAM.
INFO 2026-06-08 08:57:03 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:16:47s. Time for last 1,000,000: 2s. Last read position: chr17:44,667,749
INFO 2026-06-08 08:57:03 MarkDuplicates Tracking 177136 as yet unmatched pairs. 31973 records in RAM.
INFO 2026-06-08 08:57:05 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:16:49s. Time for last 1,000,000: 1s. Last read position: chr17:46,513,052
INFO 2026-06-08 08:57:05 MarkDuplicates Tracking 175833 as yet unmatched pairs. 30666 records in RAM.
INFO 2026-06-08 08:57:07 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 1s. Last read position: chr17:48,841,779
INFO 2026-06-08 08:57:07 MarkDuplicates Tracking 174837 as yet unmatched pairs. 29670 records in RAM.
INFO 2026-06-08 08:57:09 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:16:53s. Time for last 1,000,000: 2s. Last read position: chr17:50,186,849
INFO 2026-06-08 08:57:09 MarkDuplicates Tracking 175169 as yet unmatched pairs. 30002 records in RAM.
INFO 2026-06-08 08:57:12 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,498
INFO 2026-06-08 08:57:12 MarkDuplicates Tracking 175923 as yet unmatched pairs. 30756 records in RAM.
INFO 2026-06-08 08:57:13 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,038
INFO 2026-06-08 08:57:13 MarkDuplicates Tracking 175311 as yet unmatched pairs. 30144 records in RAM.
INFO 2026-06-08 08:57:15 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:16:58s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,345
INFO 2026-06-08 08:57:15 MarkDuplicates Tracking 173241 as yet unmatched pairs. 28074 records in RAM.
INFO 2026-06-08 08:57:16 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:00s. Time for last 1,000,000: 1s. Last read position: chr17:50,634,941
INFO 2026-06-08 08:57:16 MarkDuplicates Tracking 169978 as yet unmatched pairs. 24811 records in RAM.
INFO 2026-06-08 08:57:18 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:02s. Time for last 1,000,000: 1s. Last read position: chr17:51,168,238
INFO 2026-06-08 08:57:18 MarkDuplicates Tracking 167741 as yet unmatched pairs. 22574 records in RAM.
INFO 2026-06-08 08:57:19 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 1s. Last read position: chr17:59,210,838
INFO 2026-06-08 08:57:19 MarkDuplicates Tracking 164757 as yet unmatched pairs. 19590 records in RAM.
INFO 2026-06-08 08:57:21 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:04s. Time for last 1,000,000: 1s. Last read position: chr17:59,683,699
INFO 2026-06-08 08:57:21 MarkDuplicates Tracking 165163 as yet unmatched pairs. 19996 records in RAM.
INFO 2026-06-08 08:57:22 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:06s. Time for last 1,000,000: 1s. Last read position: chr17:63,579,914
INFO 2026-06-08 08:57:22 MarkDuplicates Tracking 162399 as yet unmatched pairs. 17231 records in RAM.
INFO 2026-06-08 08:57:24 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:07s. Time for last 1,000,000: 1s. Last read position: chr17:66,302,980
INFO 2026-06-08 08:57:24 MarkDuplicates Tracking 161168 as yet unmatched pairs. 16000 records in RAM.
INFO 2026-06-08 08:57:25 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 1s. Last read position: chr17:73,031,584
INFO 2026-06-08 08:57:25 MarkDuplicates Tracking 159955 as yet unmatched pairs. 14786 records in RAM.
INFO 2026-06-08 08:57:26 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:10s. Time for last 1,000,000: 1s. Last read position: chr17:75,321,766
INFO 2026-06-08 08:57:26 MarkDuplicates Tracking 158184 as yet unmatched pairs. 13015 records in RAM.
INFO 2026-06-08 08:57:28 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 1s. Last read position: chr17:75,729,389
INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 157486 as yet unmatched pairs. 12317 records in RAM.
INFO 2026-06-08 08:57:29 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:13s. Time for last 1,000,000: 1s. Last read position: chr17:75,847,805
INFO 2026-06-08 08:57:29 MarkDuplicates Tracking 155666 as yet unmatched pairs. 10497 records in RAM.
INFO 2026-06-08 08:57:31 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:15s. Time for last 1,000,000: 1s. Last read position: chr17:76,627,154
INFO 2026-06-08 08:57:31 MarkDuplicates Tracking 153831 as yet unmatched pairs. 8662 records in RAM.
INFO 2026-06-08 08:57:33 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 2s. Last read position: chr17:78,708,221
INFO 2026-06-08 08:57:33 MarkDuplicates Tracking 152341 as yet unmatched pairs. 7165 records in RAM.
INFO 2026-06-08 08:57:35 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 2s. Last read position: chr17:80,332,159
INFO 2026-06-08 08:57:35 MarkDuplicates Tracking 150898 as yet unmatched pairs. 5722 records in RAM.
INFO 2026-06-08 08:57:37 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:17:21s. Time for last 1,000,000: 1s. Last read position: chr17:81,511,213
INFO 2026-06-08 08:57:37 MarkDuplicates Tracking 150470 as yet unmatched pairs. 5292 records in RAM.
INFO 2026-06-08 08:57:38 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: chr17:81,860,327
INFO 2026-06-08 08:57:38 MarkDuplicates Tracking 148423 as yet unmatched pairs. 3245 records in RAM.
INFO 2026-06-08 08:57:40 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:17:23s. Time for last 1,000,000: 1s. Last read position: chr17:82,188,261
INFO 2026-06-08 08:57:40 MarkDuplicates Tracking 146171 as yet unmatched pairs. 993 records in RAM.
INFO 2026-06-08 08:57:41 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:17:25s. Time for last 1,000,000: 1s. Last read position: chr18:3,457,474
INFO 2026-06-08 08:57:41 MarkDuplicates Tracking 144806 as yet unmatched pairs. 6763 records in RAM.
INFO 2026-06-08 08:57:43 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 1s. Last read position: chr18:13,438,307
INFO 2026-06-08 08:57:43 MarkDuplicates Tracking 143606 as yet unmatched pairs. 5560 records in RAM.
INFO 2026-06-08 08:57:44 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:17:28s. Time for last 1,000,000: 1s. Last read position: chr18:31,542,718
INFO 2026-06-08 08:57:44 MarkDuplicates Tracking 142387 as yet unmatched pairs. 4341 records in RAM.
INFO 2026-06-08 08:57:45 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr18:49,488,514
INFO 2026-06-08 08:57:45 MarkDuplicates Tracking 142012 as yet unmatched pairs. 3966 records in RAM.
INFO 2026-06-08 08:57:47 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:17:30s. Time for last 1,000,000: 1s. Last read position: chr18:58,919,496
INFO 2026-06-08 08:57:47 MarkDuplicates Tracking 139630 as yet unmatched pairs. 1584 records in RAM.
INFO 2026-06-08 08:57:48 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 1s. Last read position: chr18:79,718,009
INFO 2026-06-08 08:57:48 MarkDuplicates Tracking 138313 as yet unmatched pairs. 267 records in RAM.
INFO 2026-06-08 08:57:50 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 1s. Last read position: chr19:885,815
INFO 2026-06-08 08:57:50 MarkDuplicates Tracking 136924 as yet unmatched pairs. 60482 records in RAM.
INFO 2026-06-08 08:57:51 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr19:1,438,414
INFO 2026-06-08 08:57:51 MarkDuplicates Tracking 135248 as yet unmatched pairs. 58806 records in RAM.
INFO 2026-06-08 08:57:53 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr19:2,233,794
INFO 2026-06-08 08:57:53 MarkDuplicates Tracking 133521 as yet unmatched pairs. 57079 records in RAM.
INFO 2026-06-08 08:57:54 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr19:3,964,979
INFO 2026-06-08 08:57:54 MarkDuplicates Tracking 131735 as yet unmatched pairs. 55293 records in RAM.
INFO 2026-06-08 08:57:56 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 1s. Last read position: chr19:5,667,822
INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 130200 as yet unmatched pairs. 53756 records in RAM.
INFO 2026-06-08 08:57:58 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 2s. Last read position: chr19:6,707,257
INFO 2026-06-08 08:57:58 MarkDuplicates Tracking 128872 as yet unmatched pairs. 52428 records in RAM.
INFO 2026-06-08 08:58:00 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 2s. Last read position: chr19:7,973,864
INFO 2026-06-08 08:58:00 MarkDuplicates Tracking 127039 as yet unmatched pairs. 50595 records in RAM.
INFO 2026-06-08 08:58:02 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr19:10,467,457
INFO 2026-06-08 08:58:02 MarkDuplicates Tracking 125639 as yet unmatched pairs. 49195 records in RAM.
INFO 2026-06-08 08:58:03 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr19:11,243,100
INFO 2026-06-08 08:58:03 MarkDuplicates Tracking 124246 as yet unmatched pairs. 47802 records in RAM.
INFO 2026-06-08 08:58:05 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chr19:12,792,962
INFO 2026-06-08 08:58:05 MarkDuplicates Tracking 122859 as yet unmatched pairs. 46415 records in RAM.
INFO 2026-06-08 08:58:06 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chr19:14,450,387
INFO 2026-06-08 08:58:06 MarkDuplicates Tracking 121242 as yet unmatched pairs. 44796 records in RAM.
INFO 2026-06-08 08:58:08 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 1s. Last read position: chr19:15,265,584
INFO 2026-06-08 08:58:08 MarkDuplicates Tracking 119779 as yet unmatched pairs. 43333 records in RAM.
INFO 2026-06-08 08:58:09 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chr19:17,511,850
INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 118167 as yet unmatched pairs. 41721 records in RAM.
INFO 2026-06-08 08:58:10 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr19:18,434,880
INFO 2026-06-08 08:58:10 MarkDuplicates Tracking 116431 as yet unmatched pairs. 39985 records in RAM.
INFO 2026-06-08 08:58:12 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 1s. Last read position: chr19:23,597,610
INFO 2026-06-08 08:58:12 MarkDuplicates Tracking 114832 as yet unmatched pairs. 38386 records in RAM.
INFO 2026-06-08 08:58:13 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chr19:34,958,016
INFO 2026-06-08 08:58:13 MarkDuplicates Tracking 113546 as yet unmatched pairs. 37100 records in RAM.
INFO 2026-06-08 08:58:15 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr19:35,633,810
INFO 2026-06-08 08:58:15 MarkDuplicates Tracking 112358 as yet unmatched pairs. 35912 records in RAM.
INFO 2026-06-08 08:58:16 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr19:38,164,649
INFO 2026-06-08 08:58:16 MarkDuplicates Tracking 110580 as yet unmatched pairs. 34134 records in RAM.
INFO 2026-06-08 08:58:18 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr19:38,724,430
INFO 2026-06-08 08:58:18 MarkDuplicates Tracking 109606 as yet unmatched pairs. 33160 records in RAM.
INFO 2026-06-08 08:58:19 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr19:38,838,947
INFO 2026-06-08 08:58:19 MarkDuplicates Tracking 108441 as yet unmatched pairs. 31995 records in RAM.
INFO 2026-06-08 08:58:21 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 1s. Last read position: chr19:39,435,855
INFO 2026-06-08 08:58:21 MarkDuplicates Tracking 106338 as yet unmatched pairs. 29892 records in RAM.
INFO 2026-06-08 08:58:23 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 2s. Last read position: chr19:39,876,858
INFO 2026-06-08 08:58:23 MarkDuplicates Tracking 104985 as yet unmatched pairs. 28539 records in RAM.
INFO 2026-06-08 08:58:24 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr19:39,889,480
INFO 2026-06-08 08:58:24 MarkDuplicates Tracking 106491 as yet unmatched pairs. 30045 records in RAM.
INFO 2026-06-08 08:58:26 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr19:39,894,148
INFO 2026-06-08 08:58:26 MarkDuplicates Tracking 105176 as yet unmatched pairs. 28730 records in RAM.
INFO 2026-06-08 08:58:27 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr19:39,915,778
INFO 2026-06-08 08:58:27 MarkDuplicates Tracking 102747 as yet unmatched pairs. 26301 records in RAM.
INFO 2026-06-08 08:58:29 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr19:40,441,562
INFO 2026-06-08 08:58:29 MarkDuplicates Tracking 100250 as yet unmatched pairs. 23804 records in RAM.
INFO 2026-06-08 08:58:30 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr19:41,422,210
INFO 2026-06-08 08:58:30 MarkDuplicates Tracking 98674 as yet unmatched pairs. 22228 records in RAM.
INFO 2026-06-08 08:58:32 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr19:41,761,335
INFO 2026-06-08 08:58:32 MarkDuplicates Tracking 101307 as yet unmatched pairs. 24861 records in RAM.
INFO 2026-06-08 08:58:33 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr19:42,273,879
INFO 2026-06-08 08:58:33 MarkDuplicates Tracking 96508 as yet unmatched pairs. 20062 records in RAM.
INFO 2026-06-08 08:58:34 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr19:43,776,494
INFO 2026-06-08 08:58:34 MarkDuplicates Tracking 95095 as yet unmatched pairs. 18642 records in RAM.
INFO 2026-06-08 08:58:36 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr19:45,409,380
INFO 2026-06-08 08:58:36 MarkDuplicates Tracking 93061 as yet unmatched pairs. 16608 records in RAM.
INFO 2026-06-08 08:58:37 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr19:46,722,903
INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 91516 as yet unmatched pairs. 15062 records in RAM.
INFO 2026-06-08 08:58:39 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr19:47,756,551
INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 90133 as yet unmatched pairs. 13679 records in RAM.
INFO 2026-06-08 08:58:40 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr19:48,905,798
INFO 2026-06-08 08:58:40 MarkDuplicates Tracking 88600 as yet unmatched pairs. 12146 records in RAM.
INFO 2026-06-08 08:58:42 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr19:49,496,458
INFO 2026-06-08 08:58:42 MarkDuplicates Tracking 87661 as yet unmatched pairs. 11207 records in RAM.
INFO 2026-06-08 08:58:43 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr19:49,664,723
INFO 2026-06-08 08:58:43 MarkDuplicates Tracking 85366 as yet unmatched pairs. 8912 records in RAM.
INFO 2026-06-08 08:58:45 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr19:50,278,113
INFO 2026-06-08 08:58:45 MarkDuplicates Tracking 83669 as yet unmatched pairs. 7215 records in RAM.
INFO 2026-06-08 08:58:47 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr19:52,767,058
INFO 2026-06-08 08:58:47 MarkDuplicates Tracking 82092 as yet unmatched pairs. 5638 records in RAM.
INFO 2026-06-08 08:58:48 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr19:54,457,831
INFO 2026-06-08 08:58:48 MarkDuplicates Tracking 80810 as yet unmatched pairs. 4356 records in RAM.
INFO 2026-06-08 08:58:50 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr19:55,453,262
INFO 2026-06-08 08:58:50 MarkDuplicates Tracking 79364 as yet unmatched pairs. 2910 records in RAM.
INFO 2026-06-08 08:58:51 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr19:57,873,330
INFO 2026-06-08 08:58:51 MarkDuplicates Tracking 77601 as yet unmatched pairs. 1146 records in RAM.
INFO 2026-06-08 08:58:52 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr20:499,915
INFO 2026-06-08 08:58:52 MarkDuplicates Tracking 76418 as yet unmatched pairs. 20362 records in RAM.
INFO 2026-06-08 08:58:54 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr20:3,785,946
INFO 2026-06-08 08:58:54 MarkDuplicates Tracking 75149 as yet unmatched pairs. 19093 records in RAM.
INFO 2026-06-08 08:58:55 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr20:16,367,307
INFO 2026-06-08 08:58:55 MarkDuplicates Tracking 73416 as yet unmatched pairs. 17357 records in RAM.
INFO 2026-06-08 08:58:57 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr20:20,512,608
INFO 2026-06-08 08:58:57 MarkDuplicates Tracking 72295 as yet unmatched pairs. 16236 records in RAM.
INFO 2026-06-08 08:58:58 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr20:25,280,351
INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 71296 as yet unmatched pairs. 15237 records in RAM.
INFO 2026-06-08 08:59:00 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr20:33,387,396
INFO 2026-06-08 08:59:00 MarkDuplicates Tracking 69300 as yet unmatched pairs. 13241 records in RAM.
INFO 2026-06-08 08:59:01 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr20:35,502,874
INFO 2026-06-08 08:59:01 MarkDuplicates Tracking 68116 as yet unmatched pairs. 12057 records in RAM.
INFO 2026-06-08 08:59:02 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr20:37,179,165
INFO 2026-06-08 08:59:02 MarkDuplicates Tracking 66851 as yet unmatched pairs. 10792 records in RAM.
INFO 2026-06-08 08:59:04 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr20:44,159,775
INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 65367 as yet unmatched pairs. 9308 records in RAM.
INFO 2026-06-08 08:59:05 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr20:45,899,685
INFO 2026-06-08 08:59:05 MarkDuplicates Tracking 64127 as yet unmatched pairs. 8067 records in RAM.
INFO 2026-06-08 08:59:07 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr20:49,905,671
INFO 2026-06-08 08:59:07 MarkDuplicates Tracking 62765 as yet unmatched pairs. 6705 records in RAM.
INFO 2026-06-08 08:59:09 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 2s. Last read position: chr20:57,488,725
INFO 2026-06-08 08:59:09 MarkDuplicates Tracking 61221 as yet unmatched pairs. 5160 records in RAM.
INFO 2026-06-08 08:59:10 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr20:62,143,237
INFO 2026-06-08 08:59:10 MarkDuplicates Tracking 59847 as yet unmatched pairs. 3786 records in RAM.
INFO 2026-06-08 08:59:12 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr20:62,813,172
INFO 2026-06-08 08:59:12 MarkDuplicates Tracking 58487 as yet unmatched pairs. 2426 records in RAM.
INFO 2026-06-08 08:59:13 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr20:63,735,239
INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 56676 as yet unmatched pairs. 615 records in RAM.
INFO 2026-06-08 08:59:14 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,862
INFO 2026-06-08 08:59:14 MarkDuplicates Tracking 55716 as yet unmatched pairs. 8672 records in RAM.
INFO 2026-06-08 08:59:16 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,399
INFO 2026-06-08 08:59:16 MarkDuplicates Tracking 54680 as yet unmatched pairs. 7634 records in RAM.
INFO 2026-06-08 08:59:17 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr21:25,725,232
INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 53737 as yet unmatched pairs. 6691 records in RAM.
INFO 2026-06-08 08:59:18 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr21:33,551,980
INFO 2026-06-08 08:59:18 MarkDuplicates Tracking 52913 as yet unmatched pairs. 5867 records in RAM.
INFO 2026-06-08 08:59:19 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr21:39,393,251
INFO 2026-06-08 08:59:19 MarkDuplicates Tracking 51034 as yet unmatched pairs. 3988 records in RAM.
INFO 2026-06-08 08:59:21 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr21:44,266,027
INFO 2026-06-08 08:59:21 MarkDuplicates Tracking 49911 as yet unmatched pairs. 2865 records in RAM.
INFO 2026-06-08 08:59:22 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr21:46,116,036
INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 48181 as yet unmatched pairs. 1135 records in RAM.
INFO 2026-06-08 08:59:24 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr22:18,922,287
INFO 2026-06-08 08:59:24 MarkDuplicates Tracking 46575 as yet unmatched pairs. 21555 records in RAM.
INFO 2026-06-08 08:59:25 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr22:20,933,884
INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 45158 as yet unmatched pairs. 20138 records in RAM.
INFO 2026-06-08 08:59:26 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr22:23,692,662
INFO 2026-06-08 08:59:26 MarkDuplicates Tracking 43982 as yet unmatched pairs. 18962 records in RAM.
INFO 2026-06-08 08:59:28 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr22:26,491,466
INFO 2026-06-08 08:59:28 MarkDuplicates Tracking 42001 as yet unmatched pairs. 16981 records in RAM.
INFO 2026-06-08 08:59:29 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr22:29,341,649
INFO 2026-06-08 08:59:29 MarkDuplicates Tracking 40682 as yet unmatched pairs. 15662 records in RAM.
INFO 2026-06-08 08:59:31 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr22:31,604,390
INFO 2026-06-08 08:59:31 MarkDuplicates Tracking 39174 as yet unmatched pairs. 14154 records in RAM.
INFO 2026-06-08 08:59:33 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr22:36,288,924
INFO 2026-06-08 08:59:33 MarkDuplicates Tracking 38158 as yet unmatched pairs. 13138 records in RAM.
INFO 2026-06-08 08:59:34 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr22:37,029,215
INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 36432 as yet unmatched pairs. 11412 records in RAM.
INFO 2026-06-08 08:59:36 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr22:37,877,675
INFO 2026-06-08 08:59:36 MarkDuplicates Tracking 35280 as yet unmatched pairs. 10260 records in RAM.
INFO 2026-06-08 08:59:37 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr22:39,224,490
INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 33508 as yet unmatched pairs. 8488 records in RAM.
INFO 2026-06-08 08:59:39 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr22:41,141,116
INFO 2026-06-08 08:59:39 MarkDuplicates Tracking 32244 as yet unmatched pairs. 7224 records in RAM.
INFO 2026-06-08 08:59:40 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr22:41,904,928
INFO 2026-06-08 08:59:40 MarkDuplicates Tracking 30695 as yet unmatched pairs. 5675 records in RAM.
INFO 2026-06-08 08:59:41 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr22:45,344,562
INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 29272 as yet unmatched pairs. 4252 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr22:50,246,954
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 27531 as yet unmatched pairs. 2510 records in RAM.
INFO 2026-06-08 08:59:44 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr22:50,506,395
INFO 2026-06-08 08:59:44 MarkDuplicates Tracking 26740 as yet unmatched pairs. 1719 records in RAM.
INFO 2026-06-08 08:59:46 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chrX:2,958,350
INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 24154 as yet unmatched pairs. 19188 records in RAM.
INFO 2026-06-08 08:59:47 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chrX:19,546,040
INFO 2026-06-08 08:59:47 MarkDuplicates Tracking 23144 as yet unmatched pairs. 18176 records in RAM.
INFO 2026-06-08 08:59:48 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chrX:38,805,397
INFO 2026-06-08 08:59:48 MarkDuplicates Tracking 21741 as yet unmatched pairs. 16773 records in RAM.
INFO 2026-06-08 08:59:50 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chrX:46,499,815
INFO 2026-06-08 08:59:50 MarkDuplicates Tracking 20384 as yet unmatched pairs. 15415 records in RAM.
INFO 2026-06-08 08:59:52 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chrX:48,814,992
INFO 2026-06-08 08:59:52 MarkDuplicates Tracking 19332 as yet unmatched pairs. 14363 records in RAM.
INFO 2026-06-08 08:59:53 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chrX:53,217,830
INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 17778 as yet unmatched pairs. 12809 records in RAM.
INFO 2026-06-08 08:59:54 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chrX:57,592,823
INFO 2026-06-08 08:59:54 MarkDuplicates Tracking 16432 as yet unmatched pairs. 11463 records in RAM.
INFO 2026-06-08 08:59:56 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chrX:71,248,501
INFO 2026-06-08 08:59:56 MarkDuplicates Tracking 15101 as yet unmatched pairs. 10132 records in RAM.
INFO 2026-06-08 08:59:57 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chrX:77,683,292
INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 14698 as yet unmatched pairs. 9729 records in RAM.
INFO 2026-06-08 08:59:59 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chrX:101,412,703
INFO 2026-06-08 08:59:59 MarkDuplicates Tracking 13000 as yet unmatched pairs. 8031 records in RAM.
INFO 2026-06-08 09:00:00 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chrX:119,468,599
INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 12252 as yet unmatched pairs. 7283 records in RAM.
INFO 2026-06-08 09:00:02 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chrX:130,496,087
INFO 2026-06-08 09:00:02 MarkDuplicates Tracking 10518 as yet unmatched pairs. 5549 records in RAM.
INFO 2026-06-08 09:00:03 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chrX:153,702,020
INFO 2026-06-08 09:00:03 MarkDuplicates Tracking 9328 as yet unmatched pairs. 4359 records in RAM.
INFO 2026-06-08 09:00:04 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chrX:154,352,336
INFO 2026-06-08 09:00:04 MarkDuplicates Tracking 8551 as yet unmatched pairs. 3582 records in RAM.
INFO 2026-06-08 09:00:06 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chrX:154,367,686
INFO 2026-06-08 09:00:06 MarkDuplicates Tracking 7346 as yet unmatched pairs. 2377 records in RAM.
INFO 2026-06-08 09:00:07 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chrX:155,116,138
INFO 2026-06-08 09:00:07 MarkDuplicates Tracking 5142 as yet unmatched pairs. 173 records in RAM.
INFO 2026-06-08 09:00:08 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,764
INFO 2026-06-08 09:00:08 MarkDuplicates Tracking 3277 as yet unmatched pairs. 82 records in RAM.
INFO 2026-06-08 09:00:09 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,028
INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 2640 as yet unmatched pairs. 2614 records in RAM.
INFO 2026-06-08 09:00:10 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,322
INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 44 as yet unmatched pairs. 18 records in RAM.
INFO 2026-06-08 09:00:11 MarkDuplicates Read 638336832 records. 0 pairs never matched.
INFO 2026-06-08 09:00:59 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141368; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:00:59 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:01:04 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:01:04 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:01:32 OpticalDuplicateFinder Large duplicate set. size = 1189
INFO 2026-06-08 09:01:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,318
INFO 2026-06-08 09:01:39 OpticalDuplicateFinder Large duplicate set. size = 1285
INFO 2026-06-08 09:01:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,102
INFO 2026-06-08 09:01:45 OpticalDuplicateFinder Large duplicate set. size = 1044
INFO 2026-06-08 09:01:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,253
INFO 2026-06-08 09:02:09 OpticalDuplicateFinder Large duplicate set. size = 1051
INFO 2026-06-08 09:02:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,327
INFO 2026-06-08 09:02:09 OpticalDuplicateFinder Large duplicate set. size = 1038
INFO 2026-06-08 09:02:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,589
INFO 2026-06-08 09:02:32 OpticalDuplicateFinder Large duplicate set. size = 1106
INFO 2026-06-08 09:02:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,012
INFO 2026-06-08 09:02:52 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:02:52 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:03:55 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:04:06 MarkDuplicates After generateDuplicateIndexes freeMemory: 204004360; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:04:06 MarkDuplicates Marking 504521854 records as duplicates.
INFO 2026-06-08 09:04:06 MarkDuplicates Found 10671472 optical duplicate clusters.
INFO 2026-06-08 09:04:06 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:04:21 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:14s. Time for last 10,000,000: 14s. Last read position: chr1:21,876,649
INFO 2026-06-08 09:04:36 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:29s. Time for last 10,000,000: 14s. Last read position: chr1:42,696,910
INFO 2026-06-08 09:04:51 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:44s. Time for last 10,000,000: 14s. Last read position: chr1:110,017,975
INFO 2026-06-08 09:05:05 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:00:58s. Time for last 10,000,000: 14s. Last read position: chr1:153,940,938
INFO 2026-06-08 09:05:20 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:13s. Time for last 10,000,000: 14s. Last read position: chr1:180,175,344
INFO 2026-06-08 09:05:35 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:28s. Time for last 10,000,000: 14s. Last read position: chr1:226,402,367
INFO 2026-06-08 09:05:49 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:42s. Time for last 10,000,000: 14s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:06:04 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:01:57s. Time for last 10,000,000: 14s. Last read position: chr2:74,369,437
INFO 2026-06-08 09:06:18 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:11s. Time for last 10,000,000: 14s. Last read position: chr2:152,735,035
INFO 2026-06-08 09:06:33 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:26s. Time for last 10,000,000: 14s. Last read position: chr2:201,205,893
INFO 2026-06-08 09:06:47 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:40s. Time for last 10,000,000: 14s. Last read position: chr2:231,463,210
INFO 2026-06-08 09:07:02 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:02:55s. Time for last 10,000,000: 14s. Last read position: chr3:42,194,815
INFO 2026-06-08 09:07:17 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:10s. Time for last 10,000,000: 14s. Last read position: chr3:72,929,137
INFO 2026-06-08 09:07:31 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:24s. Time for last 10,000,000: 14s. Last read position: chr3:183,982,826
INFO 2026-06-08 09:07:46 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:39s. Time for last 10,000,000: 14s. Last read position: chr4:39,904,084
INFO 2026-06-08 09:08:01 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:03:54s. Time for last 10,000,000: 14s. Last read position: chr4:151,174,670
INFO 2026-06-08 09:08:15 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:08s. Time for last 10,000,000: 14s. Last read position: chr5:76,658,466
INFO 2026-06-08 09:08:30 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:23s. Time for last 10,000,000: 14s. Last read position: chr5:150,402,597
INFO 2026-06-08 09:08:44 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:04:37s. Time for last 10,000,000: 14s. Last read position: chr6:3,323,967
INFO 2026-06-08 09:08:58 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:04:52s. Time for last 10,000,000: 14s. Last read position: chr6:31,896,784
INFO 2026-06-08 09:09:13 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:06s. Time for last 10,000,000: 14s. Last read position: chr6:70,566,944
INFO 2026-06-08 09:09:27 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:20s. Time for last 10,000,000: 14s. Last read position: chr6:159,225,618
INFO 2026-06-08 09:09:42 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:05:35s. Time for last 10,000,000: 14s. Last read position: chr7:44,104,901
INFO 2026-06-08 09:09:56 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:05:49s. Time for last 10,000,000: 14s. Last read position: chr7:100,613,574
INFO 2026-06-08 09:10:10 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:04s. Time for last 10,000,000: 14s. Last read position: chr7:138,460,715
INFO 2026-06-08 09:10:25 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:18s. Time for last 10,000,000: 14s. Last read position: chr8:30,786,278
INFO 2026-06-08 09:10:40 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:06:33s. Time for last 10,000,000: 14s. Last read position: chr8:100,718,237
INFO 2026-06-08 09:10:54 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:06:47s. Time for last 10,000,000: 14s. Last read position: chr8:144,264,479
INFO 2026-06-08 09:11:09 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:02s. Time for last 10,000,000: 14s. Last read position: chr9:98,823,297
INFO 2026-06-08 09:11:23 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:16s. Time for last 10,000,000: 14s. Last read position: chr9:134,045,302
INFO 2026-06-08 09:11:38 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:07:31s. Time for last 10,000,000: 14s. Last read position: chr10:35,516,593
INFO 2026-06-08 09:11:53 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:07:46s. Time for last 10,000,000: 14s. Last read position: chr10:96,527,212
INFO 2026-06-08 09:12:07 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:00s. Time for last 10,000,000: 14s. Last read position: chr11:396,897
INFO 2026-06-08 09:12:22 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:08:15s. Time for last 10,000,000: 14s. Last read position: chr11:3,029,066
INFO 2026-06-08 09:12:36 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:08:30s. Time for last 10,000,000: 14s. Last read position: chr11:59,806,737
INFO 2026-06-08 09:12:51 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:08:44s. Time for last 10,000,000: 14s. Last read position: chr11:66,268,671
INFO 2026-06-08 09:13:05 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:08:59s. Time for last 10,000,000: 14s. Last read position: chr11:86,808,574
INFO 2026-06-08 09:13:20 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:09:13s. Time for last 10,000,000: 14s. Last read position: chr12:11,171,405
INFO 2026-06-08 09:13:35 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:09:28s. Time for last 10,000,000: 14s. Last read position: chr12:54,280,822
INFO 2026-06-08 09:13:49 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:09:42s. Time for last 10,000,000: 14s. Last read position: chr12:95,210,904
INFO 2026-06-08 09:14:04 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:09:57s. Time for last 10,000,000: 14s. Last read position: chr12:132,796,640
INFO 2026-06-08 09:14:18 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:10:11s. Time for last 10,000,000: 14s. Last read position: chr14:24,166,128
INFO 2026-06-08 09:14:33 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:10:26s. Time for last 10,000,000: 14s. Last read position: chr14:104,701,607
INFO 2026-06-08 09:14:47 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:10:40s. Time for last 10,000,000: 14s. Last read position: chr15:43,598,244
INFO 2026-06-08 09:15:02 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:10:55s. Time for last 10,000,000: 14s. Last read position: chr15:78,894,819
INFO 2026-06-08 09:15:17 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:11:10s. Time for last 10,000,000: 14s. Last read position: chr16:14,765,046
INFO 2026-06-08 09:15:32 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:11:25s. Time for last 10,000,000: 14s. Last read position: chr16:22,480,872
INFO 2026-06-08 09:15:46 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:11:39s. Time for last 10,000,000: 14s. Last read position: chr16:30,724,189
INFO 2026-06-08 09:16:01 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:11:54s. Time for last 10,000,000: 14s. Last read position: chr16:84,977,107
INFO 2026-06-08 09:16:15 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:12:08s. Time for last 10,000,000: 14s. Last read position: chr17:18,184,755
INFO 2026-06-08 09:16:29 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:12:23s. Time for last 10,000,000: 14s. Last read position: chr17:41,763,123
INFO 2026-06-08 09:16:45 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:12:38s. Time for last 10,000,000: 15s. Last read position: chr17:50,634,941
INFO 2026-06-08 09:17:02 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:12:55s. Time for last 10,000,000: 16s. Last read position: chr17:76,627,154
INFO 2026-06-08 09:17:18 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:13:11s. Time for last 10,000,000: 16s. Last read position: chr18:58,919,496
INFO 2026-06-08 09:17:34 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:13:27s. Time for last 10,000,000: 15s. Last read position: chr19:11,243,100
INFO 2026-06-08 09:17:50 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:13:43s. Time for last 10,000,000: 16s. Last read position: chr19:38,724,430
INFO 2026-06-08 09:18:05 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:13:59s. Time for last 10,000,000: 15s. Last read position: chr19:42,273,879
INFO 2026-06-08 09:18:20 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:14:13s. Time for last 10,000,000: 14s. Last read position: chr19:54,457,831
INFO 2026-06-08 09:18:35 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:14:28s. Time for last 10,000,000: 14s. Last read position: chr20:37,179,165
INFO 2026-06-08 09:18:49 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:14:42s. Time for last 10,000,000: 14s. Last read position: chr21:25,725,232
INFO 2026-06-08 09:19:03 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:14:57s. Time for last 10,000,000: 14s. Last read position: chr22:31,604,390
INFO 2026-06-08 09:19:18 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:15:11s. Time for last 10,000,000: 14s. Last read position: chrX:2,958,350
INFO 2026-06-08 09:19:32 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:15:25s. Time for last 10,000,000: 14s. Last read position: chrX:119,468,599
INFO 2026-06-08 09:19:48 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:15:41s. Time for last 10,000,000: 15s. Last read position: */*
INFO 2026-06-08 09:19:51 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:19:51 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:19:51 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:19:51 MarkDuplicates Before output close freeMemory: 203957768; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:19:51 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:19:51 MarkDuplicates After output close freeMemory: 104206240; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:19:51 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 39.61 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory