Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/0e37296a6c1afee0c4dee8e16f875e/659_Mt-T1-TRNA-1_B23WHTKLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/6ff08d818875f5c0dbf3b1ba60e2e6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/6ff08d818875f5c0dbf3b1ba60e2e6/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory