Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/964e413badd929ce454a3be7c9365f/tih_rna_sample_00451_B23WHTKLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/3460bff3c85c9f635118b9db8cc0d2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/3460bff3c85c9f635118b9db8cc0d2/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory