File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/756fe37e9beecff68d30a5fca79254/.command.log
Size
1.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_bQZ-T1-TRNA-1_B23WHTKLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-99ebc9bd-f9f1-4b2c-b9a0-02ddaf99f257/75/8438968e551d03cb7cc7a0681df9ae/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/756fe37e9beecff68d30a5fca79254/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/c49b7ceb3385f0c29ca10796cdce8a/659_bQZ-T1-TRNA-1_B23WHTKLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/756fe37e9beecff68d30a5fca79254/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/4de88cacb8b18bc4a1be6d4764403a/659_bQZ-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
AGAP3--BRAF
starfusion
arriba
SYNE2--MTHFD1
starfusion
arriba
TVP23C--CDRT4
arriba
ME1--DOP1A
arriba

  0%|          | 0/4 [00:00<?, ?it/s]
Processing AGAP3--BRAF:   0%|          | 0/4 [00:00<?, ?it/s]
Processing AGAP3--BRAF:  25%|██▌       | 1/4 [00:00<00:00,  9.08it/s]
Processing SYNE2--MTHFD1:  25%|██▌       | 1/4 [00:00<00:00,  9.08it/s]
Processing SYNE2--MTHFD1:  50%|█████     | 2/4 [00:00<00:00,  9.36it/s]
Processing TVP23C--CDRT4:  50%|█████     | 2/4 [00:00<00:00,  9.36it/s]
Processing TVP23C--CDRT4:  75%|███████▌  | 3/4 [00:00<00:00,  9.45it/s]
Processing ME1--DOP1A:  75%|███████▌  | 3/4 [00:00<00:00,  9.45it/s]   
Processing ME1--DOP1A: 100%|██████████| 4/4 [00:00<00:00,  9.50it/s]
Processing ME1--DOP1A: 100%|██████████| 4/4 [00:00<00:00,  9.44it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory