File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/3b321a5797da7c18d749b09a69ba35/.command.log
Size
2.6 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_bhK-T1-TRNA-1_B23WHTKLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-99ebc9bd-f9f1-4b2c-b9a0-02ddaf99f257/75/8438968e551d03cb7cc7a0681df9ae/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/3b321a5797da7c18d749b09a69ba35/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/5c8f8ebde49b60286c9a375f137777/659_bhK-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/3b321a5797da7c18d749b09a69ba35/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/e3604418fdab434a4bcf28fb674a55/659_bhK-T1-TRNA-1_B23WHTKLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
CCDC6--RET
starfusion
arriba
ECHS1--NEBL
starfusion
arriba
TLK2--AC240565.1
starfusion
DNAJC1--C10orf143
starfusion
arriba
STX16--NPEPL1
arriba
TVP23C--CDRT4
arriba
AC092807.3--DDAH1
arriba
KLRC4--KLRK1
arriba

  0%|          | 0/8 [00:00<?, ?it/s]
Processing CCDC6--RET:   0%|          | 0/8 [00:00<?, ?it/s]
Processing CCDC6--RET:  12%|█▎        | 1/8 [00:00<00:00,  8.67it/s]
Processing ECHS1--NEBL:  12%|█▎        | 1/8 [00:00<00:00,  8.67it/s]
Processing ECHS1--NEBL:  25%|██▌       | 2/8 [00:00<00:00,  9.09it/s]
Processing TLK2--AC240565.1:  25%|██▌       | 2/8 [00:00<00:00,  9.09it/s]
Processing TLK2--AC240565.1:  38%|███▊      | 3/8 [00:00<00:00,  9.23it/s]
Processing DNAJC1--C10orf143:  38%|███▊      | 3/8 [00:00<00:00,  9.23it/s]
Processing DNAJC1--C10orf143:  50%|█████     | 4/8 [00:00<00:00,  9.31it/s]
Processing STX16--NPEPL1:  50%|█████     | 4/8 [00:00<00:00,  9.31it/s]    
Processing STX16--NPEPL1:  62%|██████▎   | 5/8 [00:00<00:00,  9.36it/s]
Processing TVP23C--CDRT4:  62%|██████▎   | 5/8 [00:00<00:00,  9.36it/s]
Processing TVP23C--CDRT4:  75%|███████▌  | 6/8 [00:00<00:00,  9.38it/s]
Processing AC092807.3--DDAH1:  75%|███████▌  | 6/8 [00:00<00:00,  9.38it/s]
Processing AC092807.3--DDAH1:  88%|████████▊ | 7/8 [00:00<00:00,  9.40it/s]
Processing KLRC4--KLRK1:  88%|████████▊ | 7/8 [00:00<00:00,  9.40it/s]     
Processing KLRC4--KLRK1: 100%|██████████| 8/8 [00:00<00:00,  9.41it/s]
Processing KLRC4--KLRK1: 100%|██████████| 8/8 [00:00<00:00,  9.32it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory