Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/04c4c44ea17fe7421b72d5f28c777c/659_cfy-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/ea81636569b6b4ea6b37108bb94b54/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/ea81636569b6b4ea6b37108bb94b54/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/596dc83cd135ae3e53e2e69434618e/659_cfy-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_cfy-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
          1