Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/d9ae15e2e8d53a1e0c67a865046be9/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/d9ae15e2e8d53a1e0c67a865046be9/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/596dc83cd135ae3e53e2e69434618e/659_cfy-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_cfy-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_cfy-T1-TRNA-1_B23WHTKLT4_1.md.bam --METRICS_FILE 659_cfy-T1-TRNA-1_B23WHTKLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:50:23.310 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:50:23 GMT 2026] MarkDuplicates --INPUT 659_cfy-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_cfy-T1-TRNA-1_B23WHTKLT4_1.md.bam --METRICS_FILE 659_cfy-T1-TRNA-1_B23WHTKLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:50:23 GMT 2026] Executing as ?@nf-73d9ae15e2e8d53a1e0c67a865046be9-a80ae-42z5f on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:50:23 MarkDuplicates Start of doWork freeMemory: 105493432; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:50:23 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:50:23 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,043,912
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 11091 as yet unmatched pairs. 8735 records in RAM.
INFO 2026-06-08 08:50:30 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 3s. Last read position: chr1:1,049,378
INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 8220 as yet unmatched pairs. 3998 records in RAM.
INFO 2026-06-08 08:50:32 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 1s. Last read position: chr1:1,318,840
INFO 2026-06-08 08:50:32 MarkDuplicates Tracking 6414 as yet unmatched pairs. 263 records in RAM.
INFO 2026-06-08 08:50:34 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 1s. Last read position: chr1:1,765,309
INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 8592 as yet unmatched pairs. 449 records in RAM.
INFO 2026-06-08 08:50:36 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:6,249,410
INFO 2026-06-08 08:50:36 MarkDuplicates Tracking 10547 as yet unmatched pairs. 328 records in RAM.
INFO 2026-06-08 08:50:38 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:8,863,235
INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 16234 as yet unmatched pairs. 4445 records in RAM.
INFO 2026-06-08 08:50:41 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 2s. Last read position: chr1:10,411,512
INFO 2026-06-08 08:50:41 MarkDuplicates Tracking 14086 as yet unmatched pairs. 785 records in RAM.
INFO 2026-06-08 08:50:43 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:12,456,036
INFO 2026-06-08 08:50:43 MarkDuplicates Tracking 15154 as yet unmatched pairs. 308 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:16,201,800
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 16848 as yet unmatched pairs. 508 records in RAM.
INFO 2026-06-08 08:50:48 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 2s. Last read position: chr1:17,697,151
INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 18610 as yet unmatched pairs. 739 records in RAM.
INFO 2026-06-08 08:50:50 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:20,483,690
INFO 2026-06-08 08:50:50 MarkDuplicates Tracking 21071 as yet unmatched pairs. 1603 records in RAM.
INFO 2026-06-08 08:50:52 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 2s. Last read position: chr1:21,836,806
INFO 2026-06-08 08:50:52 MarkDuplicates Tracking 22546 as yet unmatched pairs. 1616 records in RAM.
INFO 2026-06-08 08:50:54 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:22,895,480
INFO 2026-06-08 08:50:54 MarkDuplicates Tracking 22683 as yet unmatched pairs. 234 records in RAM.
INFO 2026-06-08 08:50:57 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:25,294,331
INFO 2026-06-08 08:50:57 MarkDuplicates Tracking 23907 as yet unmatched pairs. 12 records in RAM.
INFO 2026-06-08 08:50:59 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:26,561,551
INFO 2026-06-08 08:50:59 MarkDuplicates Tracking 25710 as yet unmatched pairs. 362 records in RAM.
INFO 2026-06-08 08:51:01 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:27,350,896
INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 27759 as yet unmatched pairs. 941 records in RAM.
INFO 2026-06-08 08:51:04 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 2s. Last read position: chr1:29,255,386
INFO 2026-06-08 08:51:04 MarkDuplicates Tracking 29770 as yet unmatched pairs. 1297 records in RAM.
INFO 2026-06-08 08:51:06 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:31,579,247
INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 33742 as yet unmatched pairs. 3518 records in RAM.
INFO 2026-06-08 08:51:07 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:32,334,922
INFO 2026-06-08 08:51:07 MarkDuplicates Tracking 32240 as yet unmatched pairs. 433 records in RAM.
INFO 2026-06-08 08:51:10 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 2s. Last read position: chr1:33,334,189
INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 34431 as yet unmatched pairs. 929 records in RAM.
INFO 2026-06-08 08:51:12 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:36,301,024
INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 35284 as yet unmatched pairs. 211 records in RAM.
INFO 2026-06-08 08:51:13 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:39,447,833
INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 36889 as yet unmatched pairs. 394 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 2s. Last read position: chr1:42,682,495
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 38381 as yet unmatched pairs. 198 records in RAM.
INFO 2026-06-08 08:51:18 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:43,545,030
INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 43865 as yet unmatched pairs. 3965 records in RAM.
INFO 2026-06-08 08:51:19 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:43,619,720
INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 44594 as yet unmatched pairs. 3000 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:45,608,112
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 43460 as yet unmatched pairs. 196 records in RAM.
INFO 2026-06-08 08:51:23 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 2s. Last read position: chr1:46,799,144
INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 45729 as yet unmatched pairs. 929 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:54,043,438
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 48361 as yet unmatched pairs. 2001 records in RAM.
INFO 2026-06-08 08:51:27 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:62,117,042
INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 48596 as yet unmatched pairs. 461 records in RAM.
INFO 2026-06-08 08:51:29 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:77,631,990
INFO 2026-06-08 08:51:29 MarkDuplicates Tracking 49701 as yet unmatched pairs. 132 records in RAM.
INFO 2026-06-08 08:51:30 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:89,263,872
INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 51062 as yet unmatched pairs. 99 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:100,140,499
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 52364 as yet unmatched pairs. 118 records in RAM.
INFO 2026-06-08 08:51:34 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:109,656,776
INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 58808 as yet unmatched pairs. 5175 records in RAM.
INFO 2026-06-08 08:51:36 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 2s. Last read position: chr1:109,688,196
INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 108374 as yet unmatched pairs. 53724 records in RAM.
INFO 2026-06-08 08:51:39 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 2s. Last read position: chr1:109,690,276
INFO 2026-06-08 08:51:39 MarkDuplicates Tracking 101173 as yet unmatched pairs. 45370 records in RAM.
INFO 2026-06-08 08:51:41 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 2s. Last read position: chr1:109,693,350
INFO 2026-06-08 08:51:41 MarkDuplicates Tracking 58843 as yet unmatched pairs. 1783 records in RAM.
INFO 2026-06-08 08:51:44 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 2s. Last read position: chr1:112,699,954
INFO 2026-06-08 08:51:44 MarkDuplicates Tracking 58583 as yet unmatched pairs. 141 records in RAM.
INFO 2026-06-08 08:51:46 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 2s. Last read position: chr1:116,388,131
INFO 2026-06-08 08:51:46 MarkDuplicates Tracking 60985 as yet unmatched pairs. 1183 records in RAM.
INFO 2026-06-08 08:51:48 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:119,916,395
INFO 2026-06-08 08:51:48 MarkDuplicates Tracking 62309 as yet unmatched pairs. 1104 records in RAM.
INFO 2026-06-08 08:51:50 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:144,054,609
INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 62513 as yet unmatched pairs. 172 records in RAM.
INFO 2026-06-08 08:51:51 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:147,652,429
INFO 2026-06-08 08:51:51 MarkDuplicates Tracking 63680 as yet unmatched pairs. 374 records in RAM.
INFO 2026-06-08 08:51:53 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:149,840,998
INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 73011 as yet unmatched pairs. 8756 records in RAM.
INFO 2026-06-08 08:51:54 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:150,267,460
INFO 2026-06-08 08:51:54 MarkDuplicates Tracking 67227 as yet unmatched pairs. 1923 records in RAM.
INFO 2026-06-08 08:51:56 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:151,088,194
INFO 2026-06-08 08:51:56 MarkDuplicates Tracking 66886 as yet unmatched pairs. 96 records in RAM.
INFO 2026-06-08 08:51:58 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:153,543,773
INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 68840 as yet unmatched pairs. 639 records in RAM.
INFO 2026-06-08 08:52:00 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 2s. Last read position: chr1:154,167,741
INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 77308 as yet unmatched pairs. 7602 records in RAM.
INFO 2026-06-08 08:52:02 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:154,959,075
INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 71809 as yet unmatched pairs. 718 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:155,325,391
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 73164 as yet unmatched pairs. 578 records in RAM.
INFO 2026-06-08 08:52:06 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:156,134,412
INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 78476 as yet unmatched pairs. 4325 records in RAM.
INFO 2026-06-08 08:52:08 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:156,309,222
INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 76318 as yet unmatched pairs. 511 records in RAM.
INFO 2026-06-08 08:52:09 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:159,920,377
INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 78694 as yet unmatched pairs. 1491 records in RAM.
INFO 2026-06-08 08:52:11 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:161,158,427
INFO 2026-06-08 08:52:11 MarkDuplicates Tracking 78986 as yet unmatched pairs. 288 records in RAM.
INFO 2026-06-08 08:52:13 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:165,823,593
INFO 2026-06-08 08:52:13 MarkDuplicates Tracking 80103 as yet unmatched pairs. 5 records in RAM.
INFO 2026-06-08 08:52:15 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:173,828,373
INFO 2026-06-08 08:52:15 MarkDuplicates Tracking 81645 as yet unmatched pairs. 265 records in RAM.
INFO 2026-06-08 08:52:16 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:182,385,763
INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 83387 as yet unmatched pairs. 348 records in RAM.
INFO 2026-06-08 08:52:18 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 2s. Last read position: chr1:186,322,532
INFO 2026-06-08 08:52:18 MarkDuplicates Tracking 85805 as yet unmatched pairs. 1225 records in RAM.
INFO 2026-06-08 08:52:20 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr1:201,381,724
INFO 2026-06-08 08:52:20 MarkDuplicates Tracking 88484 as yet unmatched pairs. 2656 records in RAM.
INFO 2026-06-08 08:52:22 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr1:202,808,167
INFO 2026-06-08 08:52:22 MarkDuplicates Tracking 88448 as yet unmatched pairs. 1064 records in RAM.
INFO 2026-06-08 08:52:24 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr1:205,303,833
INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 88800 as yet unmatched pairs. 153 records in RAM.
INFO 2026-06-08 08:52:25 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr1:209,623,056
INFO 2026-06-08 08:52:25 MarkDuplicates Tracking 91547 as yet unmatched pairs. 1539 records in RAM.
INFO 2026-06-08 08:52:27 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr1:220,025,248
INFO 2026-06-08 08:52:27 MarkDuplicates Tracking 91858 as yet unmatched pairs. 397 records in RAM.
INFO 2026-06-08 08:52:30 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 3s. Last read position: chr1:225,828,725
INFO 2026-06-08 08:52:30 MarkDuplicates Tracking 93638 as yet unmatched pairs. 800 records in RAM.
INFO 2026-06-08 08:52:32 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr1:228,378,311
INFO 2026-06-08 08:52:32 MarkDuplicates Tracking 94785 as yet unmatched pairs. 337 records in RAM.
INFO 2026-06-08 08:52:35 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 2s. Last read position: chr1:234,608,708
INFO 2026-06-08 08:52:35 MarkDuplicates Tracking 97701 as yet unmatched pairs. 1337 records in RAM.
INFO 2026-06-08 08:52:37 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr1:241,597,983
INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 98105 as yet unmatched pairs. 196 records in RAM.
INFO 2026-06-08 08:52:39 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 2s. Last read position: chr2:230,017
INFO 2026-06-08 08:52:39 MarkDuplicates Tracking 100029 as yet unmatched pairs. 99671 records in RAM.
INFO 2026-06-08 08:52:41 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 2s. Last read position: chr2:10,784,257
INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 101583 as yet unmatched pairs. 101215 records in RAM.
INFO 2026-06-08 08:52:44 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 2s. Last read position: chr2:20,202,816
INFO 2026-06-08 08:52:44 MarkDuplicates Tracking 115037 as yet unmatched pairs. 114669 records in RAM.
INFO 2026-06-08 08:52:46 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 2s. Last read position: chr2:20,205,401
INFO 2026-06-08 08:52:46 MarkDuplicates Tracking 114671 as yet unmatched pairs. 114303 records in RAM.
INFO 2026-06-08 08:52:48 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 2s. Last read position: chr2:26,034,728
INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 106370 as yet unmatched pairs. 105995 records in RAM.
INFO 2026-06-08 08:52:50 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 2s. Last read position: chr2:27,386,219
INFO 2026-06-08 08:52:50 MarkDuplicates Tracking 107982 as yet unmatched pairs. 107606 records in RAM.
INFO 2026-06-08 08:52:52 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 2s. Last read position: chr2:31,868,246
INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 109229 as yet unmatched pairs. 108846 records in RAM.
INFO 2026-06-08 08:52:54 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 210996 as yet unmatched pairs. 101497 records in RAM.
INFO 2026-06-08 08:52:56 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,403
INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 781081 as yet unmatched pairs. 59162 records in RAM.
INFO 2026-06-08 08:52:57 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,422
INFO 2026-06-08 08:52:57 MarkDuplicates Tracking 833057 as yet unmatched pairs. 55309 records in RAM.
INFO 2026-06-08 08:52:59 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:39,006,515
INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 843547 as yet unmatched pairs. 52969 records in RAM.
INFO 2026-06-08 08:53:01 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:43,549,270
INFO 2026-06-08 08:53:01 MarkDuplicates Tracking 842598 as yet unmatched pairs. 52001 records in RAM.
INFO 2026-06-08 08:53:03 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:47,835,897
INFO 2026-06-08 08:53:03 MarkDuplicates Tracking 840628 as yet unmatched pairs. 50026 records in RAM.
INFO 2026-06-08 08:53:05 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 2s. Last read position: chr2:54,649,773
INFO 2026-06-08 08:53:05 MarkDuplicates Tracking 840640 as yet unmatched pairs. 50023 records in RAM.
INFO 2026-06-08 08:53:09 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 3s. Last read position: chr2:61,031,771
INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 837563 as yet unmatched pairs. 46940 records in RAM.
INFO 2026-06-08 08:53:11 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:69,044,788
INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 836725 as yet unmatched pairs. 46089 records in RAM.
INFO 2026-06-08 08:53:12 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:73,249,107
INFO 2026-06-08 08:53:12 MarkDuplicates Tracking 835253 as yet unmatched pairs. 44602 records in RAM.
INFO 2026-06-08 08:53:14 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:74,530,383
INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 832990 as yet unmatched pairs. 42337 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:86,170,668
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 831674 as yet unmatched pairs. 41020 records in RAM.
INFO 2026-06-08 08:53:18 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:95,287,199
INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 836770 as yet unmatched pairs. 46110 records in RAM.
INFO 2026-06-08 08:53:20 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:97,815,279
INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 828562 as yet unmatched pairs. 37897 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:105,882,039
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 827447 as yet unmatched pairs. 36774 records in RAM.
INFO 2026-06-08 08:53:23 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:109,819,746
INFO 2026-06-08 08:53:23 MarkDuplicates Tracking 825954 as yet unmatched pairs. 35273 records in RAM.
INFO 2026-06-08 08:53:25 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:112,652,787
INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 826143 as yet unmatched pairs. 35457 records in RAM.
INFO 2026-06-08 08:53:27 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 2s. Last read position: chr2:113,244,572
INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 826118 as yet unmatched pairs. 35426 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 3s. Last read position: chr2:128,183,687
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 822304 as yet unmatched pairs. 31589 records in RAM.
INFO 2026-06-08 08:53:32 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:136,115,238
INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 824779 as yet unmatched pairs. 34035 records in RAM.
INFO 2026-06-08 08:53:33 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:159,743,065
INFO 2026-06-08 08:53:33 MarkDuplicates Tracking 819663 as yet unmatched pairs. 28906 records in RAM.
INFO 2026-06-08 08:53:35 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:170,001,396
INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 818001 as yet unmatched pairs. 27233 records in RAM.
INFO 2026-06-08 08:53:37 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:177,219,254
INFO 2026-06-08 08:53:37 MarkDuplicates Tracking 818125 as yet unmatched pairs. 27353 records in RAM.
INFO 2026-06-08 08:53:39 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr2:186,630,824
INFO 2026-06-08 08:53:39 MarkDuplicates Tracking 816422 as yet unmatched pairs. 25642 records in RAM.
INFO 2026-06-08 08:53:41 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr2:189,004,031
INFO 2026-06-08 08:53:41 MarkDuplicates Tracking 817804 as yet unmatched pairs. 27021 records in RAM.
INFO 2026-06-08 08:53:42 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr2:190,901,983
INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 813274 as yet unmatched pairs. 22487 records in RAM.
INFO 2026-06-08 08:53:44 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr2:200,822,150
INFO 2026-06-08 08:53:44 MarkDuplicates Tracking 811154 as yet unmatched pairs. 20354 records in RAM.
INFO 2026-06-08 08:53:46 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr2:207,124,281
INFO 2026-06-08 08:53:46 MarkDuplicates Tracking 810178 as yet unmatched pairs. 19357 records in RAM.
INFO 2026-06-08 08:53:48 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,144
INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 817953 as yet unmatched pairs. 27131 records in RAM.
INFO 2026-06-08 08:53:50 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr2:215,391,641
INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 813062 as yet unmatched pairs. 22240 records in RAM.
INFO 2026-06-08 08:53:52 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr2:215,420,774
INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 808773 as yet unmatched pairs. 17948 records in RAM.
INFO 2026-06-08 08:53:53 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr2:216,499,979
INFO 2026-06-08 08:53:53 MarkDuplicates Tracking 805903 as yet unmatched pairs. 15078 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr2:218,264,543
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 803199 as yet unmatched pairs. 12368 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr2:219,251,134
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 801326 as yet unmatched pairs. 10493 records in RAM.
INFO 2026-06-08 08:53:59 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr2:219,630,190
INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 798904 as yet unmatched pairs. 8071 records in RAM.
INFO 2026-06-08 08:54:01 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr2:231,085,067
INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 798603 as yet unmatched pairs. 7765 records in RAM.
INFO 2026-06-08 08:54:02 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr2:233,556,902
INFO 2026-06-08 08:54:02 MarkDuplicates Tracking 796115 as yet unmatched pairs. 5274 records in RAM.
INFO 2026-06-08 08:54:04 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr2:237,354,903
INFO 2026-06-08 08:54:04 MarkDuplicates Tracking 795710 as yet unmatched pairs. 4867 records in RAM.
INFO 2026-06-08 08:54:06 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr2:240,465,103
INFO 2026-06-08 08:54:06 MarkDuplicates Tracking 795084 as yet unmatched pairs. 4239 records in RAM.
INFO 2026-06-08 08:54:07 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr2:241,852,715
INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 790890 as yet unmatched pairs. 30 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 2s. Last read position: chr3:9,928,163
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 789443 as yet unmatched pairs. 45030 records in RAM.
INFO 2026-06-08 08:54:13 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 2s. Last read position: chr3:13,365,997
INFO 2026-06-08 08:54:13 MarkDuplicates Tracking 788150 as yet unmatched pairs. 43726 records in RAM.
INFO 2026-06-08 08:54:14 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:19,951,026
INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 786930 as yet unmatched pairs. 42496 records in RAM.
INFO 2026-06-08 08:54:16 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:33,114,144
INFO 2026-06-08 08:54:16 MarkDuplicates Tracking 785835 as yet unmatched pairs. 41396 records in RAM.
INFO 2026-06-08 08:54:18 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:39,408,690
INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 792481 as yet unmatched pairs. 48042 records in RAM.
INFO 2026-06-08 08:54:20 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:42,209,823
INFO 2026-06-08 08:54:20 MarkDuplicates Tracking 781991 as yet unmatched pairs. 37545 records in RAM.
INFO 2026-06-08 08:54:21 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:46,686,338
INFO 2026-06-08 08:54:21 MarkDuplicates Tracking 780406 as yet unmatched pairs. 35943 records in RAM.
INFO 2026-06-08 08:54:23 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:47,686,103
INFO 2026-06-08 08:54:23 MarkDuplicates Tracking 778858 as yet unmatched pairs. 34388 records in RAM.
INFO 2026-06-08 08:54:25 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:48,469,797
INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 779338 as yet unmatched pairs. 34868 records in RAM.
INFO 2026-06-08 08:54:26 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:48,630,128
INFO 2026-06-08 08:54:26 MarkDuplicates Tracking 774714 as yet unmatched pairs. 30240 records in RAM.
INFO 2026-06-08 08:54:28 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:49,108,518
INFO 2026-06-08 08:54:28 MarkDuplicates Tracking 773087 as yet unmatched pairs. 28612 records in RAM.
INFO 2026-06-08 08:54:30 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:49,360,109
INFO 2026-06-08 08:54:30 MarkDuplicates Tracking 772944 as yet unmatched pairs. 28466 records in RAM.
INFO 2026-06-08 08:54:32 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr3:50,173,817
INFO 2026-06-08 08:54:32 MarkDuplicates Tracking 770821 as yet unmatched pairs. 26337 records in RAM.
INFO 2026-06-08 08:54:33 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr3:51,937,245
INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 768297 as yet unmatched pairs. 23812 records in RAM.
INFO 2026-06-08 08:54:35 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr3:52,529,282
INFO 2026-06-08 08:54:35 MarkDuplicates Tracking 767660 as yet unmatched pairs. 23175 records in RAM.
INFO 2026-06-08 08:54:37 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:57,641,668
INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 765324 as yet unmatched pairs. 20833 records in RAM.
INFO 2026-06-08 08:54:38 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr3:69,062,115
INFO 2026-06-08 08:54:38 MarkDuplicates Tracking 764184 as yet unmatched pairs. 19689 records in RAM.
INFO 2026-06-08 08:54:40 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr3:100,547,567
INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 762561 as yet unmatched pairs. 18066 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr3:113,805,428
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 761487 as yet unmatched pairs. 16988 records in RAM.
INFO 2026-06-08 08:54:44 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr3:122,833,316
INFO 2026-06-08 08:54:44 MarkDuplicates Tracking 759770 as yet unmatched pairs. 15265 records in RAM.
INFO 2026-06-08 08:54:46 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr3:126,118,005
INFO 2026-06-08 08:54:46 MarkDuplicates Tracking 760778 as yet unmatched pairs. 16268 records in RAM.
INFO 2026-06-08 08:54:47 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr3:128,630,036
INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 757093 as yet unmatched pairs. 12579 records in RAM.
INFO 2026-06-08 08:54:50 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 2s. Last read position: chr3:131,498,208
INFO 2026-06-08 08:54:50 MarkDuplicates Tracking 755654 as yet unmatched pairs. 11140 records in RAM.
INFO 2026-06-08 08:54:51 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr3:141,913,760
INFO 2026-06-08 08:54:51 MarkDuplicates Tracking 754439 as yet unmatched pairs. 9920 records in RAM.
INFO 2026-06-08 08:54:53 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr3:151,190,725
INFO 2026-06-08 08:54:53 MarkDuplicates Tracking 752047 as yet unmatched pairs. 7521 records in RAM.
INFO 2026-06-08 08:54:55 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr3:170,360,369
INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 751134 as yet unmatched pairs. 6596 records in RAM.
INFO 2026-06-08 08:54:56 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr3:183,833,569
INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 749896 as yet unmatched pairs. 5353 records in RAM.
INFO 2026-06-08 08:54:58 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr3:184,326,950
INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 748438 as yet unmatched pairs. 3889 records in RAM.
INFO 2026-06-08 08:55:00 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr3:189,869,351
INFO 2026-06-08 08:55:00 MarkDuplicates Tracking 747085 as yet unmatched pairs. 2534 records in RAM.
INFO 2026-06-08 08:55:01 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr3:196,393,580
INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 745521 as yet unmatched pairs. 970 records in RAM.
INFO 2026-06-08 08:55:03 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 2s. Last read position: chr4:1,238,279
INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 745731 as yet unmatched pairs. 31049 records in RAM.
INFO 2026-06-08 08:55:05 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr4:1,739,958
INFO 2026-06-08 08:55:05 MarkDuplicates Tracking 748004 as yet unmatched pairs. 33319 records in RAM.
INFO 2026-06-08 08:55:07 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr4:1,801,424
INFO 2026-06-08 08:55:07 MarkDuplicates Tracking 765047 as yet unmatched pairs. 50362 records in RAM.
INFO 2026-06-08 08:55:09 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr4:1,805,382
INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 765017 as yet unmatched pairs. 50328 records in RAM.
INFO 2026-06-08 08:55:10 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr4:1,807,184
INFO 2026-06-08 08:55:10 MarkDuplicates Tracking 740024 as yet unmatched pairs. 25335 records in RAM.
INFO 2026-06-08 08:55:12 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr4:3,518,085
INFO 2026-06-08 08:55:12 MarkDuplicates Tracking 735181 as yet unmatched pairs. 20486 records in RAM.
INFO 2026-06-08 08:55:14 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr4:10,087,815
INFO 2026-06-08 08:55:14 MarkDuplicates Tracking 733758 as yet unmatched pairs. 19057 records in RAM.
INFO 2026-06-08 08:55:15 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr4:30,723,504
INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 731366 as yet unmatched pairs. 16661 records in RAM.
INFO 2026-06-08 08:55:17 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr4:47,560,970
INFO 2026-06-08 08:55:17 MarkDuplicates Tracking 729688 as yet unmatched pairs. 14968 records in RAM.
INFO 2026-06-08 08:55:19 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr4:56,931,158
INFO 2026-06-08 08:55:19 MarkDuplicates Tracking 729025 as yet unmatched pairs. 14303 records in RAM.
INFO 2026-06-08 08:55:21 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr4:70,794,802
INFO 2026-06-08 08:55:21 MarkDuplicates Tracking 726524 as yet unmatched pairs. 11802 records in RAM.
INFO 2026-06-08 08:55:23 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr4:77,058,598
INFO 2026-06-08 08:55:23 MarkDuplicates Tracking 727822 as yet unmatched pairs. 13099 records in RAM.
INFO 2026-06-08 08:55:25 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr4:86,775,498
INFO 2026-06-08 08:55:25 MarkDuplicates Tracking 723671 as yet unmatched pairs. 8943 records in RAM.
INFO 2026-06-08 08:55:27 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 2s. Last read position: chr4:101,025,924
INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 722199 as yet unmatched pairs. 7469 records in RAM.
INFO 2026-06-08 08:55:29 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr4:119,031,386
INFO 2026-06-08 08:55:29 MarkDuplicates Tracking 721564 as yet unmatched pairs. 6831 records in RAM.
INFO 2026-06-08 08:55:30 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr4:140,540,203
INFO 2026-06-08 08:55:30 MarkDuplicates Tracking 719470 as yet unmatched pairs. 4731 records in RAM.
INFO 2026-06-08 08:55:32 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr4:152,652,877
INFO 2026-06-08 08:55:32 MarkDuplicates Tracking 718179 as yet unmatched pairs. 3431 records in RAM.
INFO 2026-06-08 08:55:34 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr4:169,401,787
INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 716604 as yet unmatched pairs. 1849 records in RAM.
INFO 2026-06-08 08:55:35 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr4:186,619,051
INFO 2026-06-08 08:55:35 MarkDuplicates Tracking 716286 as yet unmatched pairs. 1524 records in RAM.
INFO 2026-06-08 08:55:37 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 2s. Last read position: chr5:6,607,223
INFO 2026-06-08 08:55:37 MarkDuplicates Tracking 713992 as yet unmatched pairs. 39923 records in RAM.
INFO 2026-06-08 08:55:39 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 2s. Last read position: chr5:14,482,597
INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 712709 as yet unmatched pairs. 38630 records in RAM.
INFO 2026-06-08 08:55:41 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr5:33,461,934
INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 710876 as yet unmatched pairs. 36786 records in RAM.
INFO 2026-06-08 08:55:43 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr5:43,161,281
INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 709230 as yet unmatched pairs. 35140 records in RAM.
INFO 2026-06-08 08:55:44 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:56,872,675
INFO 2026-06-08 08:55:44 MarkDuplicates Tracking 708000 as yet unmatched pairs. 33907 records in RAM.
INFO 2026-06-08 08:55:46 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr5:70,441,462
INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 706760 as yet unmatched pairs. 32658 records in RAM.
INFO 2026-06-08 08:55:48 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr5:77,492,071
INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 705259 as yet unmatched pairs. 31157 records in RAM.
INFO 2026-06-08 08:55:49 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr5:83,540,106
INFO 2026-06-08 08:55:49 MarkDuplicates Tracking 704781 as yet unmatched pairs. 30678 records in RAM.
INFO 2026-06-08 08:55:52 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 2s. Last read position: chr5:96,781,712
INFO 2026-06-08 08:55:52 MarkDuplicates Tracking 702590 as yet unmatched pairs. 28484 records in RAM.
INFO 2026-06-08 08:55:54 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr5:116,447,620
INFO 2026-06-08 08:55:54 MarkDuplicates Tracking 701530 as yet unmatched pairs. 27405 records in RAM.
INFO 2026-06-08 08:55:56 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 2s. Last read position: chr5:132,214,002
INFO 2026-06-08 08:55:56 MarkDuplicates Tracking 699764 as yet unmatched pairs. 25625 records in RAM.
INFO 2026-06-08 08:55:58 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr5:135,029,270
INFO 2026-06-08 08:55:58 MarkDuplicates Tracking 698464 as yet unmatched pairs. 24324 records in RAM.
INFO 2026-06-08 08:56:00 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr5:138,783,307
INFO 2026-06-08 08:56:00 MarkDuplicates Tracking 697149 as yet unmatched pairs. 23006 records in RAM.
INFO 2026-06-08 08:56:01 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr5:140,671,241
INFO 2026-06-08 08:56:01 MarkDuplicates Tracking 695241 as yet unmatched pairs. 21089 records in RAM.
INFO 2026-06-08 08:56:03 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr5:141,656,753
INFO 2026-06-08 08:56:03 MarkDuplicates Tracking 694045 as yet unmatched pairs. 19893 records in RAM.
INFO 2026-06-08 08:56:05 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr5:146,142,952
INFO 2026-06-08 08:56:05 MarkDuplicates Tracking 692362 as yet unmatched pairs. 18205 records in RAM.
INFO 2026-06-08 08:56:07 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr5:150,121,260
INFO 2026-06-08 08:56:07 MarkDuplicates Tracking 694924 as yet unmatched pairs. 20758 records in RAM.
INFO 2026-06-08 08:56:08 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,583
INFO 2026-06-08 08:56:08 MarkDuplicates Tracking 712950 as yet unmatched pairs. 38781 records in RAM.
INFO 2026-06-08 08:56:10 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr5:150,412,630
INFO 2026-06-08 08:56:10 MarkDuplicates Tracking 688174 as yet unmatched pairs. 14005 records in RAM.
INFO 2026-06-08 08:56:12 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr5:151,546,171
INFO 2026-06-08 08:56:12 MarkDuplicates Tracking 686862 as yet unmatched pairs. 12693 records in RAM.
INFO 2026-06-08 08:56:14 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr5:157,481,903
INFO 2026-06-08 08:56:14 MarkDuplicates Tracking 685264 as yet unmatched pairs. 11094 records in RAM.
INFO 2026-06-08 08:56:15 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr5:171,391,405
INFO 2026-06-08 08:56:15 MarkDuplicates Tracking 689155 as yet unmatched pairs. 14979 records in RAM.
INFO 2026-06-08 08:56:17 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr5:175,516,632
INFO 2026-06-08 08:56:17 MarkDuplicates Tracking 682937 as yet unmatched pairs. 8745 records in RAM.
INFO 2026-06-08 08:56:19 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr5:177,467,777
INFO 2026-06-08 08:56:19 MarkDuplicates Tracking 681067 as yet unmatched pairs. 6874 records in RAM.
INFO 2026-06-08 08:56:21 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr5:179,720,424
INFO 2026-06-08 08:56:21 MarkDuplicates Tracking 680388 as yet unmatched pairs. 6193 records in RAM.
INFO 2026-06-08 08:56:22 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr5:179,824,205
INFO 2026-06-08 08:56:22 MarkDuplicates Tracking 690521 as yet unmatched pairs. 16326 records in RAM.
INFO 2026-06-08 08:56:24 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr5:180,791,614
INFO 2026-06-08 08:56:24 MarkDuplicates Tracking 681526 as yet unmatched pairs. 7326 records in RAM.
INFO 2026-06-08 08:56:26 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:2,115,743
INFO 2026-06-08 08:56:26 MarkDuplicates Tracking 674041 as yet unmatched pairs. 40742 records in RAM.
INFO 2026-06-08 08:56:28 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr6:7,580,998
INFO 2026-06-08 08:56:28 MarkDuplicates Tracking 672832 as yet unmatched pairs. 39530 records in RAM.
INFO 2026-06-08 08:56:30 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr6:18,258,389
INFO 2026-06-08 08:56:30 MarkDuplicates Tracking 671400 as yet unmatched pairs. 38091 records in RAM.
INFO 2026-06-08 08:56:32 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:26,124,314
INFO 2026-06-08 08:56:32 MarkDuplicates Tracking 674659 as yet unmatched pairs. 41350 records in RAM.
INFO 2026-06-08 08:56:33 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr6:27,132,396
INFO 2026-06-08 08:56:33 MarkDuplicates Tracking 669092 as yet unmatched pairs. 35782 records in RAM.
INFO 2026-06-08 08:56:35 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 2s. Last read position: chr6:29,945,468
INFO 2026-06-08 08:56:35 MarkDuplicates Tracking 669899 as yet unmatched pairs. 36589 records in RAM.
INFO 2026-06-08 08:56:37 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 2s. Last read position: chr6:30,744,047
INFO 2026-06-08 08:56:37 MarkDuplicates Tracking 668061 as yet unmatched pairs. 34747 records in RAM.
INFO 2026-06-08 08:56:39 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 2s. Last read position: chr6:31,356,310
INFO 2026-06-08 08:56:39 MarkDuplicates Tracking 663702 as yet unmatched pairs. 30387 records in RAM.
INFO 2026-06-08 08:56:41 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:31,646,422
INFO 2026-06-08 08:56:41 MarkDuplicates Tracking 663496 as yet unmatched pairs. 30180 records in RAM.
INFO 2026-06-08 08:56:43 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr6:31,828,138
INFO 2026-06-08 08:56:43 MarkDuplicates Tracking 662398 as yet unmatched pairs. 29081 records in RAM.
INFO 2026-06-08 08:56:44 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr6:32,050,073
INFO 2026-06-08 08:56:44 MarkDuplicates Tracking 660018 as yet unmatched pairs. 26699 records in RAM.
INFO 2026-06-08 08:56:46 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr6:32,949,801
INFO 2026-06-08 08:56:46 MarkDuplicates Tracking 658649 as yet unmatched pairs. 25329 records in RAM.
INFO 2026-06-08 08:56:48 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr6:33,315,608
INFO 2026-06-08 08:56:48 MarkDuplicates Tracking 657140 as yet unmatched pairs. 23819 records in RAM.
INFO 2026-06-08 08:56:49 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr6:34,606,588
INFO 2026-06-08 08:56:49 MarkDuplicates Tracking 655792 as yet unmatched pairs. 22469 records in RAM.
INFO 2026-06-08 08:56:51 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr6:36,970,437
INFO 2026-06-08 08:56:51 MarkDuplicates Tracking 656810 as yet unmatched pairs. 23486 records in RAM.
INFO 2026-06-08 08:56:53 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr6:42,269,413
INFO 2026-06-08 08:56:53 MarkDuplicates Tracking 652136 as yet unmatched pairs. 18812 records in RAM.
INFO 2026-06-08 08:56:54 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr6:43,512,538
INFO 2026-06-08 08:56:54 MarkDuplicates Tracking 651093 as yet unmatched pairs. 17760 records in RAM.
INFO 2026-06-08 08:56:56 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr6:44,260,116
INFO 2026-06-08 08:56:56 MarkDuplicates Tracking 649328 as yet unmatched pairs. 15993 records in RAM.
INFO 2026-06-08 08:56:58 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr6:53,522,423
INFO 2026-06-08 08:56:58 MarkDuplicates Tracking 647504 as yet unmatched pairs. 14154 records in RAM.
INFO 2026-06-08 08:56:59 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr6:63,713,021
INFO 2026-06-08 08:56:59 MarkDuplicates Tracking 646217 as yet unmatched pairs. 12866 records in RAM.
INFO 2026-06-08 08:57:01 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr6:82,220,651
INFO 2026-06-08 08:57:01 MarkDuplicates Tracking 644963 as yet unmatched pairs. 11603 records in RAM.
INFO 2026-06-08 08:57:03 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr6:96,549,500
INFO 2026-06-08 08:57:03 MarkDuplicates Tracking 643289 as yet unmatched pairs. 9928 records in RAM.
INFO 2026-06-08 08:57:04 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr6:111,580,372
INFO 2026-06-08 08:57:04 MarkDuplicates Tracking 641915 as yet unmatched pairs. 8549 records in RAM.
INFO 2026-06-08 08:57:06 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr6:129,578,584
INFO 2026-06-08 08:57:06 MarkDuplicates Tracking 640335 as yet unmatched pairs. 6964 records in RAM.
INFO 2026-06-08 08:57:08 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr6:139,166,375
INFO 2026-06-08 08:57:08 MarkDuplicates Tracking 638996 as yet unmatched pairs. 5623 records in RAM.
INFO 2026-06-08 08:57:09 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr6:151,349,663
INFO 2026-06-08 08:57:09 MarkDuplicates Tracking 638055 as yet unmatched pairs. 4673 records in RAM.
INFO 2026-06-08 08:57:11 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr6:158,783,533
INFO 2026-06-08 08:57:11 MarkDuplicates Tracking 638228 as yet unmatched pairs. 4834 records in RAM.
INFO 2026-06-08 08:57:13 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr6:167,010,813
INFO 2026-06-08 08:57:13 MarkDuplicates Tracking 634379 as yet unmatched pairs. 982 records in RAM.
INFO 2026-06-08 08:57:15 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 2s. Last read position: chr7:1,127,264
INFO 2026-06-08 08:57:15 MarkDuplicates Tracking 632839 as yet unmatched pairs. 45635 records in RAM.
INFO 2026-06-08 08:57:16 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr7:2,843,928
INFO 2026-06-08 08:57:16 MarkDuplicates Tracking 630897 as yet unmatched pairs. 43682 records in RAM.
INFO 2026-06-08 08:57:18 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr7:5,389,195
INFO 2026-06-08 08:57:18 MarkDuplicates Tracking 630001 as yet unmatched pairs. 42774 records in RAM.
INFO 2026-06-08 08:57:20 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,569
INFO 2026-06-08 08:57:20 MarkDuplicates Tracking 644914 as yet unmatched pairs. 57687 records in RAM.
INFO 2026-06-08 08:57:22 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 2s. Last read position: chr7:6,040,906
INFO 2026-06-08 08:57:22 MarkDuplicates Tracking 626229 as yet unmatched pairs. 39002 records in RAM.
INFO 2026-06-08 08:57:24 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr7:17,796,842
INFO 2026-06-08 08:57:24 MarkDuplicates Tracking 624564 as yet unmatched pairs. 37336 records in RAM.
INFO 2026-06-08 08:57:26 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 2s. Last read position: chr7:24,708,173
INFO 2026-06-08 08:57:26 MarkDuplicates Tracking 623761 as yet unmatched pairs. 36518 records in RAM.
INFO 2026-06-08 08:57:28 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr7:32,976,401
INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 623111 as yet unmatched pairs. 35852 records in RAM.
INFO 2026-06-08 08:57:30 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr7:44,073,918
INFO 2026-06-08 08:57:30 MarkDuplicates Tracking 620434 as yet unmatched pairs. 33163 records in RAM.
INFO 2026-06-08 08:57:31 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr7:44,707,223
INFO 2026-06-08 08:57:31 MarkDuplicates Tracking 619243 as yet unmatched pairs. 31968 records in RAM.
INFO 2026-06-08 08:57:33 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr7:55,154,067
INFO 2026-06-08 08:57:33 MarkDuplicates Tracking 618366 as yet unmatched pairs. 31088 records in RAM.
INFO 2026-06-08 08:57:35 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr7:67,183,166
INFO 2026-06-08 08:57:35 MarkDuplicates Tracking 615455 as yet unmatched pairs. 28169 records in RAM.
INFO 2026-06-08 08:57:36 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:73,831,398
INFO 2026-06-08 08:57:36 MarkDuplicates Tracking 619888 as yet unmatched pairs. 32595 records in RAM.
INFO 2026-06-08 08:57:38 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr7:75,192,976
INFO 2026-06-08 08:57:38 MarkDuplicates Tracking 613700 as yet unmatched pairs. 26407 records in RAM.
INFO 2026-06-08 08:57:40 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr7:76,302,871
INFO 2026-06-08 08:57:40 MarkDuplicates Tracking 624004 as yet unmatched pairs. 36709 records in RAM.
INFO 2026-06-08 08:57:41 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr7:82,915,579
INFO 2026-06-08 08:57:41 MarkDuplicates Tracking 610197 as yet unmatched pairs. 22894 records in RAM.
INFO 2026-06-08 08:57:43 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr7:94,407,853
INFO 2026-06-08 08:57:43 MarkDuplicates Tracking 615862 as yet unmatched pairs. 28558 records in RAM.
INFO 2026-06-08 08:57:45 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr7:94,629,767
INFO 2026-06-08 08:57:45 MarkDuplicates Tracking 607624 as yet unmatched pairs. 20320 records in RAM.
INFO 2026-06-08 08:57:46 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr7:99,397,884
INFO 2026-06-08 08:57:46 MarkDuplicates Tracking 606147 as yet unmatched pairs. 18841 records in RAM.
INFO 2026-06-08 08:57:48 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr7:100,585,947
INFO 2026-06-08 08:57:48 MarkDuplicates Tracking 604575 as yet unmatched pairs. 17266 records in RAM.
INFO 2026-06-08 08:57:50 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr7:101,135,728
INFO 2026-06-08 08:57:50 MarkDuplicates Tracking 603645 as yet unmatched pairs. 16336 records in RAM.
INFO 2026-06-08 08:57:51 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr7:102,541,591
INFO 2026-06-08 08:57:51 MarkDuplicates Tracking 603695 as yet unmatched pairs. 16386 records in RAM.
INFO 2026-06-08 08:57:53 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr7:105,107,888
INFO 2026-06-08 08:57:53 MarkDuplicates Tracking 600721 as yet unmatched pairs. 13411 records in RAM.
INFO 2026-06-08 08:57:54 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chr7:113,117,320
INFO 2026-06-08 08:57:54 MarkDuplicates Tracking 599422 as yet unmatched pairs. 12104 records in RAM.
INFO 2026-06-08 08:57:56 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 1s. Last read position: chr7:128,029,187
INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 600179 as yet unmatched pairs. 12857 records in RAM.
INFO 2026-06-08 08:57:58 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr7:134,447,329
INFO 2026-06-08 08:57:58 MarkDuplicates Tracking 598800 as yet unmatched pairs. 11475 records in RAM.
INFO 2026-06-08 08:57:59 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr7:138,706,564
INFO 2026-06-08 08:57:59 MarkDuplicates Tracking 595617 as yet unmatched pairs. 8289 records in RAM.
INFO 2026-06-08 08:59:00 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 60s. Last read position: chr7:142,864,674
INFO 2026-06-08 08:59:00 MarkDuplicates Tracking 594250 as yet unmatched pairs. 6914 records in RAM.
INFO 2026-06-08 08:59:01 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr7:144,374,779
INFO 2026-06-08 08:59:01 MarkDuplicates Tracking 592172 as yet unmatched pairs. 4836 records in RAM.
INFO 2026-06-08 08:59:03 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr7:150,857,096
INFO 2026-06-08 08:59:03 MarkDuplicates Tracking 590416 as yet unmatched pairs. 3058 records in RAM.
INFO 2026-06-08 08:59:04 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr7:152,247,911
INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 588701 as yet unmatched pairs. 1331 records in RAM.
INFO 2026-06-08 08:59:06 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 2s. Last read position: chr8:9,556,124
INFO 2026-06-08 08:59:06 MarkDuplicates Tracking 587306 as yet unmatched pairs. 36889 records in RAM.
INFO 2026-06-08 08:59:08 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr8:17,543,339
INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 585383 as yet unmatched pairs. 34959 records in RAM.
INFO 2026-06-08 08:59:10 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr8:22,607,194
INFO 2026-06-08 08:59:10 MarkDuplicates Tracking 586068 as yet unmatched pairs. 35643 records in RAM.
INFO 2026-06-08 08:59:12 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 2s. Last read position: chr8:26,408,014
INFO 2026-06-08 08:59:12 MarkDuplicates Tracking 583224 as yet unmatched pairs. 32798 records in RAM.
INFO 2026-06-08 08:59:14 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:30,799,738
INFO 2026-06-08 08:59:14 MarkDuplicates Tracking 581204 as yet unmatched pairs. 30774 records in RAM.
INFO 2026-06-08 08:59:16 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr8:38,418,266
INFO 2026-06-08 08:59:16 MarkDuplicates Tracking 579837 as yet unmatched pairs. 29395 records in RAM.
INFO 2026-06-08 08:59:18 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr8:42,182,798
INFO 2026-06-08 08:59:18 MarkDuplicates Tracking 580476 as yet unmatched pairs. 30028 records in RAM.
INFO 2026-06-08 08:59:20 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr8:47,864,627
INFO 2026-06-08 08:59:20 MarkDuplicates Tracking 576547 as yet unmatched pairs. 26098 records in RAM.
INFO 2026-06-08 08:59:21 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr8:60,828,693
INFO 2026-06-08 08:59:21 MarkDuplicates Tracking 574845 as yet unmatched pairs. 24385 records in RAM.
INFO 2026-06-08 08:59:23 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr8:70,273,388
INFO 2026-06-08 08:59:23 MarkDuplicates Tracking 573313 as yet unmatched pairs. 22835 records in RAM.
INFO 2026-06-08 08:59:24 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr8:94,407,704
INFO 2026-06-08 08:59:24 MarkDuplicates Tracking 572125 as yet unmatched pairs. 21643 records in RAM.
INFO 2026-06-08 08:59:26 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr8:100,712,374
INFO 2026-06-08 08:59:26 MarkDuplicates Tracking 573177 as yet unmatched pairs. 22685 records in RAM.
INFO 2026-06-08 08:59:28 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr8:107,251,958
INFO 2026-06-08 08:59:28 MarkDuplicates Tracking 569250 as yet unmatched pairs. 18755 records in RAM.
INFO 2026-06-08 08:59:29 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr8:124,543,187
INFO 2026-06-08 08:59:29 MarkDuplicates Tracking 568615 as yet unmatched pairs. 18116 records in RAM.
INFO 2026-06-08 08:59:31 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr8:133,247,904
INFO 2026-06-08 08:59:31 MarkDuplicates Tracking 570506 as yet unmatched pairs. 19994 records in RAM.
INFO 2026-06-08 08:59:33 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr8:143,021,418
INFO 2026-06-08 08:59:33 MarkDuplicates Tracking 565914 as yet unmatched pairs. 15392 records in RAM.
INFO 2026-06-08 08:59:34 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr8:143,791,280
INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 564569 as yet unmatched pairs. 14046 records in RAM.
INFO 2026-06-08 08:59:36 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,018
INFO 2026-06-08 08:59:36 MarkDuplicates Tracking 566417 as yet unmatched pairs. 15883 records in RAM.
INFO 2026-06-08 08:59:37 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,340
INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 561615 as yet unmatched pairs. 11081 records in RAM.
INFO 2026-06-08 08:59:38 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,117
INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 565715 as yet unmatched pairs. 15181 records in RAM.
INFO 2026-06-08 08:59:39 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,264
INFO 2026-06-08 08:59:39 MarkDuplicates Tracking 559105 as yet unmatched pairs. 8571 records in RAM.
INFO 2026-06-08 08:59:41 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr8:143,916,258
INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 559959 as yet unmatched pairs. 9425 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr8:143,922,151
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 556582 as yet unmatched pairs. 6035 records in RAM.
INFO 2026-06-08 08:59:44 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr8:143,935,037
INFO 2026-06-08 08:59:44 MarkDuplicates Tracking 556534 as yet unmatched pairs. 5987 records in RAM.
INFO 2026-06-08 08:59:46 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr8:144,356,020
INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 552488 as yet unmatched pairs. 1937 records in RAM.
INFO 2026-06-08 08:59:48 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr9:312,055
INFO 2026-06-08 08:59:48 MarkDuplicates Tracking 550606 as yet unmatched pairs. 25509 records in RAM.
INFO 2026-06-08 08:59:49 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr9:19,126,217
INFO 2026-06-08 08:59:49 MarkDuplicates Tracking 549597 as yet unmatched pairs. 24480 records in RAM.
INFO 2026-06-08 08:59:51 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr9:35,059,738
INFO 2026-06-08 08:59:51 MarkDuplicates Tracking 549313 as yet unmatched pairs. 24188 records in RAM.
INFO 2026-06-08 08:59:53 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr9:36,052,264
INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 546011 as yet unmatched pairs. 20883 records in RAM.
INFO 2026-06-08 08:59:54 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr9:73,163,515
INFO 2026-06-08 08:59:54 MarkDuplicates Tracking 545370 as yet unmatched pairs. 20236 records in RAM.
INFO 2026-06-08 08:59:56 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr9:92,245,025
INFO 2026-06-08 08:59:56 MarkDuplicates Tracking 543382 as yet unmatched pairs. 18222 records in RAM.
INFO 2026-06-08 08:59:57 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr9:98,989,182
INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 542653 as yet unmatched pairs. 17482 records in RAM.
INFO 2026-06-08 08:59:59 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr9:110,479,667
INFO 2026-06-08 08:59:59 MarkDuplicates Tracking 540117 as yet unmatched pairs. 14939 records in RAM.
INFO 2026-06-08 09:00:00 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr9:116,698,598
INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 538523 as yet unmatched pairs. 13337 records in RAM.
INFO 2026-06-08 09:00:02 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr9:124,810,278
INFO 2026-06-08 09:00:02 MarkDuplicates Tracking 537123 as yet unmatched pairs. 11937 records in RAM.
INFO 2026-06-08 09:00:04 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr9:127,887,484
INFO 2026-06-08 09:00:04 MarkDuplicates Tracking 535872 as yet unmatched pairs. 10679 records in RAM.
INFO 2026-06-08 09:00:05 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr9:128,721,809
INFO 2026-06-08 09:00:05 MarkDuplicates Tracking 534159 as yet unmatched pairs. 8966 records in RAM.
INFO 2026-06-08 09:00:07 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr9:131,082,057
INFO 2026-06-08 09:00:07 MarkDuplicates Tracking 532260 as yet unmatched pairs. 7062 records in RAM.
INFO 2026-06-08 09:00:09 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr9:133,460,138
INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 530904 as yet unmatched pairs. 5703 records in RAM.
INFO 2026-06-08 09:00:10 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr9:135,823,190
INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 529179 as yet unmatched pairs. 3966 records in RAM.
INFO 2026-06-08 09:00:12 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr9:136,840,754
INFO 2026-06-08 09:00:12 MarkDuplicates Tracking 528311 as yet unmatched pairs. 3098 records in RAM.
INFO 2026-06-08 09:00:13 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr9:137,614,809
INFO 2026-06-08 09:00:13 MarkDuplicates Tracking 525959 as yet unmatched pairs. 746 records in RAM.
INFO 2026-06-08 09:00:15 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr10:4,995,454
INFO 2026-06-08 09:00:15 MarkDuplicates Tracking 538625 as yet unmatched pairs. 41794 records in RAM.
INFO 2026-06-08 09:00:17 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr10:5,749,694
INFO 2026-06-08 09:00:17 MarkDuplicates Tracking 522894 as yet unmatched pairs. 26063 records in RAM.
INFO 2026-06-08 09:00:19 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr10:15,213,866
INFO 2026-06-08 09:00:19 MarkDuplicates Tracking 521615 as yet unmatched pairs. 24755 records in RAM.
INFO 2026-06-08 09:00:20 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr10:26,823,178
INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 520040 as yet unmatched pairs. 23173 records in RAM.
INFO 2026-06-08 09:00:22 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr10:32,040,383
INFO 2026-06-08 09:00:22 MarkDuplicates Tracking 521413 as yet unmatched pairs. 24546 records in RAM.
INFO 2026-06-08 09:00:23 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr10:43,112,112
INFO 2026-06-08 09:00:23 MarkDuplicates Tracking 517507 as yet unmatched pairs. 20635 records in RAM.
INFO 2026-06-08 09:00:25 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr10:46,016,568
INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 520297 as yet unmatched pairs. 23425 records in RAM.
INFO 2026-06-08 09:00:27 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr10:59,793,081
INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 516106 as yet unmatched pairs. 19233 records in RAM.
INFO 2026-06-08 09:00:28 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr10:69,386,363
INFO 2026-06-08 09:00:28 MarkDuplicates Tracking 514498 as yet unmatched pairs. 17622 records in RAM.
INFO 2026-06-08 09:00:30 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr10:72,274,936
INFO 2026-06-08 09:00:30 MarkDuplicates Tracking 521564 as yet unmatched pairs. 24685 records in RAM.
INFO 2026-06-08 09:00:31 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr10:74,070,701
INFO 2026-06-08 09:00:31 MarkDuplicates Tracking 510745 as yet unmatched pairs. 13862 records in RAM.
INFO 2026-06-08 09:00:33 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr10:79,304,090
INFO 2026-06-08 09:00:33 MarkDuplicates Tracking 510016 as yet unmatched pairs. 13110 records in RAM.
INFO 2026-06-08 09:00:34 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr10:87,232,730
INFO 2026-06-08 09:00:34 MarkDuplicates Tracking 507305 as yet unmatched pairs. 10387 records in RAM.
INFO 2026-06-08 09:00:36 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr10:93,355,650
INFO 2026-06-08 09:00:36 MarkDuplicates Tracking 506367 as yet unmatched pairs. 9449 records in RAM.
INFO 2026-06-08 09:00:38 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr10:97,400,454
INFO 2026-06-08 09:00:38 MarkDuplicates Tracking 504652 as yet unmatched pairs. 7732 records in RAM.
INFO 2026-06-08 09:00:39 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr10:101,002,692
INFO 2026-06-08 09:00:39 MarkDuplicates Tracking 503897 as yet unmatched pairs. 6977 records in RAM.
INFO 2026-06-08 09:00:41 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr10:103,602,170
INFO 2026-06-08 09:00:41 MarkDuplicates Tracking 502021 as yet unmatched pairs. 5096 records in RAM.
INFO 2026-06-08 09:00:42 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr10:119,038,305
INFO 2026-06-08 09:00:42 MarkDuplicates Tracking 499821 as yet unmatched pairs. 2893 records in RAM.
INFO 2026-06-08 09:00:44 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr10:127,447,537
INFO 2026-06-08 09:00:44 MarkDuplicates Tracking 498375 as yet unmatched pairs. 1446 records in RAM.
INFO 2026-06-08 09:00:46 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr11:308,284
INFO 2026-06-08 09:00:46 MarkDuplicates Tracking 498952 as yet unmatched pairs. 57592 records in RAM.
INFO 2026-06-08 09:00:47 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr11:810,287
INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 495998 as yet unmatched pairs. 54638 records in RAM.
INFO 2026-06-08 09:00:49 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr11:1,956,462
INFO 2026-06-08 09:00:49 MarkDuplicates Tracking 493012 as yet unmatched pairs. 51647 records in RAM.
INFO 2026-06-08 09:00:51 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr11:6,608,737
INFO 2026-06-08 09:00:51 MarkDuplicates Tracking 492046 as yet unmatched pairs. 50681 records in RAM.
INFO 2026-06-08 09:00:52 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr11:10,581,907
INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 490078 as yet unmatched pairs. 48707 records in RAM.
INFO 2026-06-08 09:00:54 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr11:18,090,475
INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 488314 as yet unmatched pairs. 46940 records in RAM.
INFO 2026-06-08 09:00:56 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:35,180,377
INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 487858 as yet unmatched pairs. 46483 records in RAM.
INFO 2026-06-08 09:00:57 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr11:46,754,936
INFO 2026-06-08 09:00:57 MarkDuplicates Tracking 485565 as yet unmatched pairs. 44189 records in RAM.
INFO 2026-06-08 09:00:59 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:57,313,812
INFO 2026-06-08 09:00:59 MarkDuplicates Tracking 485331 as yet unmatched pairs. 43952 records in RAM.
INFO 2026-06-08 09:01:01 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr11:59,152,228
INFO 2026-06-08 09:01:01 MarkDuplicates Tracking 482876 as yet unmatched pairs. 41497 records in RAM.
INFO 2026-06-08 09:01:02 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:61,323,067
INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 481900 as yet unmatched pairs. 40520 records in RAM.
INFO 2026-06-08 09:01:04 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:62,337,973
INFO 2026-06-08 09:01:04 MarkDuplicates Tracking 479600 as yet unmatched pairs. 38218 records in RAM.
INFO 2026-06-08 09:01:05 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:62,526,583
INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 478757 as yet unmatched pairs. 37374 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:62,560,126
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 479120 as yet unmatched pairs. 37734 records in RAM.
INFO 2026-06-08 09:01:09 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:62,727,074
INFO 2026-06-08 09:01:09 MarkDuplicates Tracking 475597 as yet unmatched pairs. 34208 records in RAM.
INFO 2026-06-08 09:01:10 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr11:64,230,773
INFO 2026-06-08 09:01:10 MarkDuplicates Tracking 474270 as yet unmatched pairs. 32881 records in RAM.
INFO 2026-06-08 09:01:12 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:64,769,226
INFO 2026-06-08 09:01:12 MarkDuplicates Tracking 472565 as yet unmatched pairs. 31175 records in RAM.
INFO 2026-06-08 09:01:14 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr11:65,186,005
INFO 2026-06-08 09:01:14 MarkDuplicates Tracking 473874 as yet unmatched pairs. 32480 records in RAM.
INFO 2026-06-08 09:01:15 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:65,590,530
INFO 2026-06-08 09:01:15 MarkDuplicates Tracking 469074 as yet unmatched pairs. 27669 records in RAM.
INFO 2026-06-08 09:01:17 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:65,865,852
INFO 2026-06-08 09:01:17 MarkDuplicates Tracking 466793 as yet unmatched pairs. 25388 records in RAM.
INFO 2026-06-08 09:01:18 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:66,493,570
INFO 2026-06-08 09:01:18 MarkDuplicates Tracking 465176 as yet unmatched pairs. 23771 records in RAM.
INFO 2026-06-08 09:01:20 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr11:67,399,113
INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 463809 as yet unmatched pairs. 22401 records in RAM.
INFO 2026-06-08 09:01:22 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:68,047,775
INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 461769 as yet unmatched pairs. 20359 records in RAM.
INFO 2026-06-08 09:01:23 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr11:70,407,367
INFO 2026-06-08 09:01:23 MarkDuplicates Tracking 460683 as yet unmatched pairs. 19273 records in RAM.
INFO 2026-06-08 09:01:25 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:72,098,786
INFO 2026-06-08 09:01:25 MarkDuplicates Tracking 459552 as yet unmatched pairs. 18141 records in RAM.
INFO 2026-06-08 09:01:27 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:74,078,117
INFO 2026-06-08 09:01:27 MarkDuplicates Tracking 456450 as yet unmatched pairs. 15032 records in RAM.
INFO 2026-06-08 09:01:29 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:77,901,454
INFO 2026-06-08 09:01:29 MarkDuplicates Tracking 454870 as yet unmatched pairs. 13452 records in RAM.
INFO 2026-06-08 09:01:30 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr11:94,799,401
INFO 2026-06-08 09:01:30 MarkDuplicates Tracking 453861 as yet unmatched pairs. 12437 records in RAM.
INFO 2026-06-08 09:01:32 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr11:102,402,163
INFO 2026-06-08 09:01:32 MarkDuplicates Tracking 453760 as yet unmatched pairs. 12332 records in RAM.
INFO 2026-06-08 09:01:34 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:114,253,810
INFO 2026-06-08 09:01:34 MarkDuplicates Tracking 450588 as yet unmatched pairs. 9158 records in RAM.
INFO 2026-06-08 09:01:35 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:118,484,895
INFO 2026-06-08 09:01:35 MarkDuplicates Tracking 449197 as yet unmatched pairs. 7767 records in RAM.
INFO 2026-06-08 09:01:37 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 2s. Last read position: chr11:119,055,554
INFO 2026-06-08 09:01:37 MarkDuplicates Tracking 450623 as yet unmatched pairs. 9192 records in RAM.
INFO 2026-06-08 09:01:39 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr11:120,137,991
INFO 2026-06-08 09:01:39 MarkDuplicates Tracking 445932 as yet unmatched pairs. 4501 records in RAM.
INFO 2026-06-08 09:01:41 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr11:123,061,170
INFO 2026-06-08 09:01:41 MarkDuplicates Tracking 447069 as yet unmatched pairs. 5638 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 2s. Last read position: chr11:129,093,620
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 443211 as yet unmatched pairs. 1780 records in RAM.
INFO 2026-06-08 09:01:45 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 2s. Last read position: chr11:134,220,684
INFO 2026-06-08 09:01:45 MarkDuplicates Tracking 441488 as yet unmatched pairs. 57 records in RAM.
INFO 2026-06-08 09:01:47 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 2s. Last read position: chr12:4,687,061
INFO 2026-06-08 09:01:47 MarkDuplicates Tracking 440327 as yet unmatched pairs. 48207 records in RAM.
INFO 2026-06-08 09:01:49 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr12:6,517,836
INFO 2026-06-08 09:01:49 MarkDuplicates Tracking 438849 as yet unmatched pairs. 46729 records in RAM.
INFO 2026-06-08 09:01:51 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr12:6,852,182
INFO 2026-06-08 09:01:51 MarkDuplicates Tracking 437142 as yet unmatched pairs. 45022 records in RAM.
INFO 2026-06-08 09:01:53 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr12:7,086,002
INFO 2026-06-08 09:01:53 MarkDuplicates Tracking 436885 as yet unmatched pairs. 44765 records in RAM.
INFO 2026-06-08 09:01:54 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr12:9,107,622
INFO 2026-06-08 09:01:54 MarkDuplicates Tracking 435561 as yet unmatched pairs. 43441 records in RAM.
INFO 2026-06-08 09:01:56 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr12:14,542,207
INFO 2026-06-08 09:01:56 MarkDuplicates Tracking 432850 as yet unmatched pairs. 40725 records in RAM.
INFO 2026-06-08 09:01:58 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr12:23,604,403
INFO 2026-06-08 09:01:58 MarkDuplicates Tracking 431372 as yet unmatched pairs. 39247 records in RAM.
INFO 2026-06-08 09:01:59 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr12:32,892,820
INFO 2026-06-08 09:01:59 MarkDuplicates Tracking 429837 as yet unmatched pairs. 37709 records in RAM.
INFO 2026-06-08 09:02:01 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr12:47,737,336
INFO 2026-06-08 09:02:01 MarkDuplicates Tracking 428349 as yet unmatched pairs. 36220 records in RAM.
INFO 2026-06-08 09:02:03 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr12:49,046,065
INFO 2026-06-08 09:02:03 MarkDuplicates Tracking 427784 as yet unmatched pairs. 35655 records in RAM.
INFO 2026-06-08 09:02:04 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr12:49,272,561
INFO 2026-06-08 09:02:04 MarkDuplicates Tracking 426871 as yet unmatched pairs. 34742 records in RAM.
INFO 2026-06-08 09:02:06 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr12:50,981,718
INFO 2026-06-08 09:02:06 MarkDuplicates Tracking 424749 as yet unmatched pairs. 32620 records in RAM.
INFO 2026-06-08 09:02:07 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr12:52,515,125
INFO 2026-06-08 09:02:07 MarkDuplicates Tracking 424579 as yet unmatched pairs. 32447 records in RAM.
INFO 2026-06-08 09:02:09 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr12:53,065,602
INFO 2026-06-08 09:02:09 MarkDuplicates Tracking 421007 as yet unmatched pairs. 28874 records in RAM.
INFO 2026-06-08 09:02:11 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr12:53,715,826
INFO 2026-06-08 09:02:11 MarkDuplicates Tracking 419868 as yet unmatched pairs. 27715 records in RAM.
INFO 2026-06-08 09:02:13 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr12:55,819,138
INFO 2026-06-08 09:02:13 MarkDuplicates Tracking 419030 as yet unmatched pairs. 26876 records in RAM.
INFO 2026-06-08 09:02:14 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr12:56,160,097
INFO 2026-06-08 09:02:14 MarkDuplicates Tracking 422471 as yet unmatched pairs. 30317 records in RAM.
INFO 2026-06-08 09:02:16 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr12:56,664,472
INFO 2026-06-08 09:02:16 MarkDuplicates Tracking 417878 as yet unmatched pairs. 25722 records in RAM.
INFO 2026-06-08 09:02:17 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr12:57,145,453
INFO 2026-06-08 09:02:17 MarkDuplicates Tracking 415285 as yet unmatched pairs. 23122 records in RAM.
INFO 2026-06-08 09:02:20 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 2s. Last read position: chr12:57,516,513
INFO 2026-06-08 09:02:20 MarkDuplicates Tracking 412619 as yet unmatched pairs. 20456 records in RAM.
INFO 2026-06-08 09:02:21 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr12:63,150,033
INFO 2026-06-08 09:02:21 MarkDuplicates Tracking 411208 as yet unmatched pairs. 19045 records in RAM.
INFO 2026-06-08 09:02:23 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr12:70,337,430
INFO 2026-06-08 09:02:23 MarkDuplicates Tracking 410033 as yet unmatched pairs. 17868 records in RAM.
INFO 2026-06-08 09:02:24 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr12:89,350,883
INFO 2026-06-08 09:02:24 MarkDuplicates Tracking 409965 as yet unmatched pairs. 17793 records in RAM.
INFO 2026-06-08 09:02:26 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr12:95,861,225
INFO 2026-06-08 09:02:26 MarkDuplicates Tracking 408806 as yet unmatched pairs. 16629 records in RAM.
INFO 2026-06-08 09:02:27 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr12:104,030,909
INFO 2026-06-08 09:02:27 MarkDuplicates Tracking 405946 as yet unmatched pairs. 13768 records in RAM.
INFO 2026-06-08 09:02:29 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr12:109,456,200
INFO 2026-06-08 09:02:29 MarkDuplicates Tracking 404928 as yet unmatched pairs. 12743 records in RAM.
INFO 2026-06-08 09:02:31 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr12:112,078,664
INFO 2026-06-08 09:02:31 MarkDuplicates Tracking 402865 as yet unmatched pairs. 10664 records in RAM.
INFO 2026-06-08 09:02:32 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr12:113,277,256
INFO 2026-06-08 09:02:32 MarkDuplicates Tracking 401496 as yet unmatched pairs. 9291 records in RAM.
INFO 2026-06-08 09:02:34 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:119,757,386
INFO 2026-06-08 09:02:34 MarkDuplicates Tracking 399668 as yet unmatched pairs. 7442 records in RAM.
INFO 2026-06-08 09:02:35 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr12:120,552,498
INFO 2026-06-08 09:02:35 MarkDuplicates Tracking 398598 as yet unmatched pairs. 6369 records in RAM.
INFO 2026-06-08 09:02:37 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr12:122,574,364
INFO 2026-06-08 09:02:37 MarkDuplicates Tracking 396659 as yet unmatched pairs. 4430 records in RAM.
INFO 2026-06-08 09:02:38 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr12:124,346,651
INFO 2026-06-08 09:02:38 MarkDuplicates Tracking 396678 as yet unmatched pairs. 4449 records in RAM.
INFO 2026-06-08 09:02:40 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr12:132,062,656
INFO 2026-06-08 09:02:40 MarkDuplicates Tracking 393973 as yet unmatched pairs. 1741 records in RAM.
INFO 2026-06-08 09:02:41 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr13:20,051,478
INFO 2026-06-08 09:02:41 MarkDuplicates Tracking 392598 as yet unmatched pairs. 15250 records in RAM.
INFO 2026-06-08 09:02:43 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr13:27,273,339
INFO 2026-06-08 09:02:43 MarkDuplicates Tracking 391039 as yet unmatched pairs. 13691 records in RAM.
INFO 2026-06-08 09:02:45 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr13:37,587,887
INFO 2026-06-08 09:02:45 MarkDuplicates Tracking 390000 as yet unmatched pairs. 12647 records in RAM.
INFO 2026-06-08 09:02:46 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr13:45,968,804
INFO 2026-06-08 09:02:46 MarkDuplicates Tracking 388054 as yet unmatched pairs. 10699 records in RAM.
INFO 2026-06-08 09:02:48 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr13:49,131,317
INFO 2026-06-08 09:02:48 MarkDuplicates Tracking 387187 as yet unmatched pairs. 9832 records in RAM.
INFO 2026-06-08 09:02:50 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr13:77,296,665
INFO 2026-06-08 09:02:50 MarkDuplicates Tracking 385448 as yet unmatched pairs. 8089 records in RAM.
INFO 2026-06-08 09:02:52 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 2s. Last read position: chr13:99,517,628
INFO 2026-06-08 09:02:52 MarkDuplicates Tracking 385576 as yet unmatched pairs. 8205 records in RAM.
INFO 2026-06-08 09:02:54 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr13:110,183,000
INFO 2026-06-08 09:02:54 MarkDuplicates Tracking 384633 as yet unmatched pairs. 7261 records in RAM.
INFO 2026-06-08 09:02:56 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 2s. Last read position: chr13:110,450,379
INFO 2026-06-08 09:02:56 MarkDuplicates Tracking 384894 as yet unmatched pairs. 7513 records in RAM.
INFO 2026-06-08 09:02:57 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr13:112,832,905
INFO 2026-06-08 09:02:57 MarkDuplicates Tracking 378771 as yet unmatched pairs. 1389 records in RAM.
INFO 2026-06-08 09:02:59 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr14:20,476,630
INFO 2026-06-08 09:02:59 MarkDuplicates Tracking 377127 as yet unmatched pairs. 31235 records in RAM.
INFO 2026-06-08 09:03:01 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr14:22,771,131
INFO 2026-06-08 09:03:01 MarkDuplicates Tracking 375655 as yet unmatched pairs. 29763 records in RAM.
INFO 2026-06-08 09:03:03 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr14:23,093,523
INFO 2026-06-08 09:03:03 MarkDuplicates Tracking 374076 as yet unmatched pairs. 28179 records in RAM.
INFO 2026-06-08 09:03:04 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr14:24,164,658
INFO 2026-06-08 09:03:04 MarkDuplicates Tracking 374425 as yet unmatched pairs. 28528 records in RAM.
INFO 2026-06-08 09:03:06 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr14:30,721,901
INFO 2026-06-08 09:03:06 MarkDuplicates Tracking 371157 as yet unmatched pairs. 25259 records in RAM.
INFO 2026-06-08 09:03:08 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr14:39,401,741
INFO 2026-06-08 09:03:08 MarkDuplicates Tracking 369622 as yet unmatched pairs. 23718 records in RAM.
INFO 2026-06-08 09:03:09 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr14:51,989,660
INFO 2026-06-08 09:03:09 MarkDuplicates Tracking 368792 as yet unmatched pairs. 22876 records in RAM.
INFO 2026-06-08 09:03:11 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr14:59,463,777
INFO 2026-06-08 09:03:11 MarkDuplicates Tracking 366695 as yet unmatched pairs. 20779 records in RAM.
INFO 2026-06-08 09:03:12 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr14:64,158,746
INFO 2026-06-08 09:03:12 MarkDuplicates Tracking 366211 as yet unmatched pairs. 20295 records in RAM.
INFO 2026-06-08 09:03:14 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr14:68,789,603
INFO 2026-06-08 09:03:14 MarkDuplicates Tracking 364641 as yet unmatched pairs. 18714 records in RAM.
INFO 2026-06-08 09:03:16 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr14:71,019,038
INFO 2026-06-08 09:03:16 MarkDuplicates Tracking 363000 as yet unmatched pairs. 17068 records in RAM.
INFO 2026-06-08 09:03:17 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr14:74,480,223
INFO 2026-06-08 09:03:17 MarkDuplicates Tracking 367712 as yet unmatched pairs. 21779 records in RAM.
INFO 2026-06-08 09:03:19 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr14:75,279,981
INFO 2026-06-08 09:03:19 MarkDuplicates Tracking 364272 as yet unmatched pairs. 18339 records in RAM.
INFO 2026-06-08 09:03:21 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 2s. Last read position: chr14:81,492,503
INFO 2026-06-08 09:03:21 MarkDuplicates Tracking 358286 as yet unmatched pairs. 12352 records in RAM.
INFO 2026-06-08 09:03:23 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr14:93,245,859
INFO 2026-06-08 09:03:23 MarkDuplicates Tracking 356328 as yet unmatched pairs. 10393 records in RAM.
INFO 2026-06-08 09:03:24 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr14:100,277,465
INFO 2026-06-08 09:03:24 MarkDuplicates Tracking 355443 as yet unmatched pairs. 9504 records in RAM.
INFO 2026-06-08 09:03:26 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr14:102,085,891
INFO 2026-06-08 09:03:26 MarkDuplicates Tracking 354146 as yet unmatched pairs. 8206 records in RAM.
INFO 2026-06-08 09:03:27 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr14:103,520,252
INFO 2026-06-08 09:03:27 MarkDuplicates Tracking 352556 as yet unmatched pairs. 6616 records in RAM.
INFO 2026-06-08 09:03:29 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr14:104,938,134
INFO 2026-06-08 09:03:29 MarkDuplicates Tracking 349757 as yet unmatched pairs. 3816 records in RAM.
INFO 2026-06-08 09:03:31 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr14:105,055,299
INFO 2026-06-08 09:03:31 MarkDuplicates Tracking 348081 as yet unmatched pairs. 2140 records in RAM.
INFO 2026-06-08 09:03:32 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr14:105,704,569
INFO 2026-06-08 09:03:32 MarkDuplicates Tracking 347466 as yet unmatched pairs. 1517 records in RAM.
INFO 2026-06-08 09:03:34 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr15:22,947,180
INFO 2026-06-08 09:03:34 MarkDuplicates Tracking 346730 as yet unmatched pairs. 29189 records in RAM.
INFO 2026-06-08 09:03:35 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr15:34,341,916
INFO 2026-06-08 09:03:35 MarkDuplicates Tracking 347209 as yet unmatched pairs. 29664 records in RAM.
INFO 2026-06-08 09:03:37 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr15:40,767,899
INFO 2026-06-08 09:03:37 MarkDuplicates Tracking 342705 as yet unmatched pairs. 25156 records in RAM.
INFO 2026-06-08 09:03:39 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr15:42,226,855
INFO 2026-06-08 09:03:39 MarkDuplicates Tracking 341594 as yet unmatched pairs. 24044 records in RAM.
INFO 2026-06-08 09:03:40 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr15:43,792,360
INFO 2026-06-08 09:03:40 MarkDuplicates Tracking 344110 as yet unmatched pairs. 26560 records in RAM.
INFO 2026-06-08 09:03:42 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr15:48,537,535
INFO 2026-06-08 09:03:42 MarkDuplicates Tracking 338713 as yet unmatched pairs. 21162 records in RAM.
INFO 2026-06-08 09:03:43 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr15:57,231,212
INFO 2026-06-08 09:03:43 MarkDuplicates Tracking 338712 as yet unmatched pairs. 21161 records in RAM.
INFO 2026-06-08 09:03:45 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr15:61,919,342
INFO 2026-06-08 09:03:45 MarkDuplicates Tracking 336214 as yet unmatched pairs. 18660 records in RAM.
INFO 2026-06-08 09:03:46 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr15:63,666,051
INFO 2026-06-08 09:03:46 MarkDuplicates Tracking 333603 as yet unmatched pairs. 16046 records in RAM.
INFO 2026-06-08 09:03:48 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr15:66,500,068
INFO 2026-06-08 09:03:48 MarkDuplicates Tracking 333709 as yet unmatched pairs. 16152 records in RAM.
INFO 2026-06-08 09:03:50 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr15:71,164,900
INFO 2026-06-08 09:03:50 MarkDuplicates Tracking 330640 as yet unmatched pairs. 13081 records in RAM.
INFO 2026-06-08 09:03:51 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr15:73,283,013
INFO 2026-06-08 09:03:51 MarkDuplicates Tracking 328943 as yet unmatched pairs. 11383 records in RAM.
INFO 2026-06-08 09:03:53 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr15:74,655,882
INFO 2026-06-08 09:03:53 MarkDuplicates Tracking 327090 as yet unmatched pairs. 9530 records in RAM.
INFO 2026-06-08 09:03:54 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr15:76,274,422
INFO 2026-06-08 09:03:54 MarkDuplicates Tracking 326307 as yet unmatched pairs. 8747 records in RAM.
INFO 2026-06-08 09:03:56 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr15:78,935,033
INFO 2026-06-08 09:03:56 MarkDuplicates Tracking 326780 as yet unmatched pairs. 9219 records in RAM.
INFO 2026-06-08 09:03:57 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr15:85,579,392
INFO 2026-06-08 09:03:57 MarkDuplicates Tracking 322449 as yet unmatched pairs. 4885 records in RAM.
INFO 2026-06-08 09:03:59 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr15:90,067,799
INFO 2026-06-08 09:03:59 MarkDuplicates Tracking 321119 as yet unmatched pairs. 3554 records in RAM.
INFO 2026-06-08 09:04:00 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr15:90,881,779
INFO 2026-06-08 09:04:00 MarkDuplicates Tracking 319619 as yet unmatched pairs. 2053 records in RAM.
INFO 2026-06-08 09:04:02 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr15:101,281,758
INFO 2026-06-08 09:04:02 MarkDuplicates Tracking 318296 as yet unmatched pairs. 727 records in RAM.
INFO 2026-06-08 09:04:04 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr16:590,367
INFO 2026-06-08 09:04:04 MarkDuplicates Tracking 316228 as yet unmatched pairs. 48399 records in RAM.
INFO 2026-06-08 09:04:05 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr16:1,345,830
INFO 2026-06-08 09:04:05 MarkDuplicates Tracking 314328 as yet unmatched pairs. 46499 records in RAM.
INFO 2026-06-08 09:04:07 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr16:1,985,904
INFO 2026-06-08 09:04:07 MarkDuplicates Tracking 312117 as yet unmatched pairs. 44288 records in RAM.
INFO 2026-06-08 09:04:09 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr16:2,528,581
INFO 2026-06-08 09:04:09 MarkDuplicates Tracking 310924 as yet unmatched pairs. 43093 records in RAM.
INFO 2026-06-08 09:04:10 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr16:2,930,553
INFO 2026-06-08 09:04:10 MarkDuplicates Tracking 309089 as yet unmatched pairs. 41257 records in RAM.
INFO 2026-06-08 09:04:11 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr16:4,358,446
INFO 2026-06-08 09:04:11 MarkDuplicates Tracking 307023 as yet unmatched pairs. 39191 records in RAM.
INFO 2026-06-08 09:04:14 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 2s. Last read position: chr16:9,938,302
INFO 2026-06-08 09:04:14 MarkDuplicates Tracking 305131 as yet unmatched pairs. 37299 records in RAM.
INFO 2026-06-08 09:04:15 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr16:14,880,123
INFO 2026-06-08 09:04:15 MarkDuplicates Tracking 303977 as yet unmatched pairs. 36136 records in RAM.
INFO 2026-06-08 09:04:17 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr16:16,114,830
INFO 2026-06-08 09:04:17 MarkDuplicates Tracking 304070 as yet unmatched pairs. 36229 records in RAM.
INFO 2026-06-08 09:04:19 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr16:18,351,546
INFO 2026-06-08 09:04:19 MarkDuplicates Tracking 302748 as yet unmatched pairs. 34907 records in RAM.
INFO 2026-06-08 09:04:20 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr16:19,114,801
INFO 2026-06-08 09:04:20 MarkDuplicates Tracking 303013 as yet unmatched pairs. 35172 records in RAM.
INFO 2026-06-08 09:04:22 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr16:21,980,610
INFO 2026-06-08 09:04:22 MarkDuplicates Tracking 300964 as yet unmatched pairs. 33123 records in RAM.
INFO 2026-06-08 09:04:23 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr16:27,363,053
INFO 2026-06-08 09:04:23 MarkDuplicates Tracking 299882 as yet unmatched pairs. 32041 records in RAM.
INFO 2026-06-08 09:04:25 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr16:28,731,834
INFO 2026-06-08 09:04:25 MarkDuplicates Tracking 297667 as yet unmatched pairs. 29826 records in RAM.
INFO 2026-06-08 09:04:26 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr16:29,483,937
INFO 2026-06-08 09:04:26 MarkDuplicates Tracking 296801 as yet unmatched pairs. 28960 records in RAM.
INFO 2026-06-08 09:04:28 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr16:29,963,282
INFO 2026-06-08 09:04:28 MarkDuplicates Tracking 296801 as yet unmatched pairs. 28954 records in RAM.
INFO 2026-06-08 09:04:29 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr16:30,084,937
INFO 2026-06-08 09:04:29 MarkDuplicates Tracking 294706 as yet unmatched pairs. 26859 records in RAM.
INFO 2026-06-08 09:04:31 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:30,662,430
INFO 2026-06-08 09:04:31 MarkDuplicates Tracking 292729 as yet unmatched pairs. 24882 records in RAM.
INFO 2026-06-08 09:04:33 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:31,038,182
INFO 2026-06-08 09:04:33 MarkDuplicates Tracking 290064 as yet unmatched pairs. 22217 records in RAM.
INFO 2026-06-08 09:04:34 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:46,674,390
INFO 2026-06-08 09:04:34 MarkDuplicates Tracking 289900 as yet unmatched pairs. 22053 records in RAM.
INFO 2026-06-08 09:04:35 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr16:55,485,656
INFO 2026-06-08 09:04:35 MarkDuplicates Tracking 287805 as yet unmatched pairs. 19957 records in RAM.
INFO 2026-06-08 09:04:37 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:57,641,679
INFO 2026-06-08 09:04:37 MarkDuplicates Tracking 290569 as yet unmatched pairs. 22718 records in RAM.
INFO 2026-06-08 09:04:39 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:58,551,771
INFO 2026-06-08 09:04:39 MarkDuplicates Tracking 284760 as yet unmatched pairs. 16909 records in RAM.
INFO 2026-06-08 09:04:40 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr16:67,439,070
INFO 2026-06-08 09:04:40 MarkDuplicates Tracking 282889 as yet unmatched pairs. 15030 records in RAM.
INFO 2026-06-08 09:04:42 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr16:68,684,730
INFO 2026-06-08 09:04:42 MarkDuplicates Tracking 281241 as yet unmatched pairs. 13380 records in RAM.
INFO 2026-06-08 09:04:44 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 2s. Last read position: chr16:69,693,445
INFO 2026-06-08 09:04:44 MarkDuplicates Tracking 279139 as yet unmatched pairs. 11278 records in RAM.
INFO 2026-06-08 09:04:46 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr16:71,285,724
INFO 2026-06-08 09:04:46 MarkDuplicates Tracking 277636 as yet unmatched pairs. 9775 records in RAM.
INFO 2026-06-08 09:04:47 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr16:74,965,686
INFO 2026-06-08 09:04:47 MarkDuplicates Tracking 276144 as yet unmatched pairs. 8283 records in RAM.
INFO 2026-06-08 09:04:48 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:83,217,361
INFO 2026-06-08 09:04:48 MarkDuplicates Tracking 274790 as yet unmatched pairs. 6927 records in RAM.
INFO 2026-06-08 09:04:50 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr16:85,805,733
INFO 2026-06-08 09:04:50 MarkDuplicates Tracking 275176 as yet unmatched pairs. 7310 records in RAM.
INFO 2026-06-08 09:04:51 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr16:88,658,647
INFO 2026-06-08 09:04:51 MarkDuplicates Tracking 271095 as yet unmatched pairs. 3228 records in RAM.
INFO 2026-06-08 09:04:53 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr16:89,561,061
INFO 2026-06-08 09:04:53 MarkDuplicates Tracking 276425 as yet unmatched pairs. 8558 records in RAM.
INFO 2026-06-08 09:04:55 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 2s. Last read position: chr17:1,361,177
INFO 2026-06-08 09:04:55 MarkDuplicates Tracking 269596 as yet unmatched pairs. 81707 records in RAM.
INFO 2026-06-08 09:04:57 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr17:2,333,023
INFO 2026-06-08 09:04:57 MarkDuplicates Tracking 265945 as yet unmatched pairs. 78055 records in RAM.
INFO 2026-06-08 09:04:58 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr17:4,946,692
INFO 2026-06-08 09:04:58 MarkDuplicates Tracking 267080 as yet unmatched pairs. 79189 records in RAM.
INFO 2026-06-08 09:05:00 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr17:7,311,973
INFO 2026-06-08 09:05:00 MarkDuplicates Tracking 265441 as yet unmatched pairs. 77549 records in RAM.
INFO 2026-06-08 09:05:02 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr17:7,675,163
INFO 2026-06-08 09:05:02 MarkDuplicates Tracking 261971 as yet unmatched pairs. 74075 records in RAM.
INFO 2026-06-08 09:05:04 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr17:15,538,026
INFO 2026-06-08 09:05:04 MarkDuplicates Tracking 259816 as yet unmatched pairs. 71920 records in RAM.
INFO 2026-06-08 09:05:06 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr17:17,817,752
INFO 2026-06-08 09:05:06 MarkDuplicates Tracking 258781 as yet unmatched pairs. 70882 records in RAM.
INFO 2026-06-08 09:05:07 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr17:27,617,414
INFO 2026-06-08 09:05:07 MarkDuplicates Tracking 256724 as yet unmatched pairs. 68825 records in RAM.
INFO 2026-06-08 09:05:09 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr17:28,759,011
INFO 2026-06-08 09:05:09 MarkDuplicates Tracking 255176 as yet unmatched pairs. 67277 records in RAM.
INFO 2026-06-08 09:05:11 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr17:31,200,471
INFO 2026-06-08 09:05:11 MarkDuplicates Tracking 253690 as yet unmatched pairs. 65790 records in RAM.
INFO 2026-06-08 09:05:12 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr17:35,809,503
INFO 2026-06-08 09:05:12 MarkDuplicates Tracking 253218 as yet unmatched pairs. 65318 records in RAM.
INFO 2026-06-08 09:05:14 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr17:38,352,181
INFO 2026-06-08 09:05:14 MarkDuplicates Tracking 251160 as yet unmatched pairs. 63260 records in RAM.
INFO 2026-06-08 09:05:15 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr17:38,918,638
INFO 2026-06-08 09:05:15 MarkDuplicates Tracking 250848 as yet unmatched pairs. 62948 records in RAM.
INFO 2026-06-08 09:05:17 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr17:39,716,418
INFO 2026-06-08 09:05:17 MarkDuplicates Tracking 255868 as yet unmatched pairs. 67968 records in RAM.
INFO 2026-06-08 09:05:19 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr17:40,129,403
INFO 2026-06-08 09:05:19 MarkDuplicates Tracking 246602 as yet unmatched pairs. 58702 records in RAM.
INFO 2026-06-08 09:05:20 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr17:40,632,248
INFO 2026-06-08 09:05:20 MarkDuplicates Tracking 244783 as yet unmatched pairs. 56883 records in RAM.
INFO 2026-06-08 09:05:22 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr17:41,620,536
INFO 2026-06-08 09:05:22 MarkDuplicates Tracking 247525 as yet unmatched pairs. 59625 records in RAM.
INFO 2026-06-08 09:05:23 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr17:41,763,087
INFO 2026-06-08 09:05:23 MarkDuplicates Tracking 244320 as yet unmatched pairs. 56420 records in RAM.
INFO 2026-06-08 09:05:25 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr17:42,404,956
INFO 2026-06-08 09:05:25 MarkDuplicates Tracking 239516 as yet unmatched pairs. 51616 records in RAM.
INFO 2026-06-08 09:05:27 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr17:43,484,097
INFO 2026-06-08 09:05:27 MarkDuplicates Tracking 237653 as yet unmatched pairs. 49753 records in RAM.
INFO 2026-06-08 09:05:28 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr17:44,351,669
INFO 2026-06-08 09:05:28 MarkDuplicates Tracking 239525 as yet unmatched pairs. 51625 records in RAM.
INFO 2026-06-08 09:05:30 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr17:45,584,316
INFO 2026-06-08 09:05:30 MarkDuplicates Tracking 234408 as yet unmatched pairs. 46504 records in RAM.
INFO 2026-06-08 09:05:32 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 2s. Last read position: chr17:48,075,060
INFO 2026-06-08 09:05:32 MarkDuplicates Tracking 233415 as yet unmatched pairs. 45511 records in RAM.
INFO 2026-06-08 09:05:34 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,077,404
INFO 2026-06-08 09:05:34 MarkDuplicates Tracking 236345 as yet unmatched pairs. 48439 records in RAM.
INFO 2026-06-08 09:05:35 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,388
INFO 2026-06-08 09:05:35 MarkDuplicates Tracking 244046 as yet unmatched pairs. 56138 records in RAM.
INFO 2026-06-08 09:05:37 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,949
INFO 2026-06-08 09:05:37 MarkDuplicates Tracking 283362 as yet unmatched pairs. 95454 records in RAM.
INFO 2026-06-08 09:05:38 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,224
INFO 2026-06-08 09:05:38 MarkDuplicates Tracking 253286 as yet unmatched pairs. 65378 records in RAM.
INFO 2026-06-08 09:05:40 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,079
INFO 2026-06-08 09:05:40 MarkDuplicates Tracking 275608 as yet unmatched pairs. 87700 records in RAM.
INFO 2026-06-08 09:05:42 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,865
INFO 2026-06-08 09:05:42 MarkDuplicates Tracking 273406 as yet unmatched pairs. 85498 records in RAM.
INFO 2026-06-08 09:06:42 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:16:17s. Time for last 1,000,000: 60s. Last read position: chr17:50,193,975
INFO 2026-06-08 09:06:42 MarkDuplicates Tracking 273079 as yet unmatched pairs. 85171 records in RAM.
INFO 2026-06-08 09:07:49 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 66s. Last read position: chr17:50,194,791
INFO 2026-06-08 09:07:49 MarkDuplicates Tracking 264796 as yet unmatched pairs. 76888 records in RAM.
INFO 2026-06-08 09:07:51 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,154
INFO 2026-06-08 09:07:51 MarkDuplicates Tracking 263008 as yet unmatched pairs. 75100 records in RAM.
INFO 2026-06-08 09:07:52 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,731
INFO 2026-06-08 09:07:52 MarkDuplicates Tracking 266040 as yet unmatched pairs. 78131 records in RAM.
INFO 2026-06-08 09:07:54 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,572
INFO 2026-06-08 09:07:54 MarkDuplicates Tracking 234633 as yet unmatched pairs. 46724 records in RAM.
INFO 2026-06-08 09:07:56 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: chr17:50,999,661
INFO 2026-06-08 09:07:56 MarkDuplicates Tracking 214371 as yet unmatched pairs. 26451 records in RAM.
INFO 2026-06-08 09:07:57 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 1s. Last read position: chr17:59,169,764
INFO 2026-06-08 09:07:57 MarkDuplicates Tracking 212177 as yet unmatched pairs. 24250 records in RAM.
INFO 2026-06-08 09:07:59 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 1s. Last read position: chr17:59,683,715
INFO 2026-06-08 09:07:59 MarkDuplicates Tracking 214417 as yet unmatched pairs. 26490 records in RAM.
INFO 2026-06-08 09:08:01 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr17:62,672,055
INFO 2026-06-08 09:08:01 MarkDuplicates Tracking 209835 as yet unmatched pairs. 21908 records in RAM.
INFO 2026-06-08 09:08:02 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 1s. Last read position: chr17:64,800,080
INFO 2026-06-08 09:08:02 MarkDuplicates Tracking 207777 as yet unmatched pairs. 19849 records in RAM.
INFO 2026-06-08 09:08:04 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr17:68,530,285
INFO 2026-06-08 09:08:04 MarkDuplicates Tracking 213326 as yet unmatched pairs. 25393 records in RAM.
INFO 2026-06-08 09:08:06 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr17:75,040,144
INFO 2026-06-08 09:08:06 MarkDuplicates Tracking 205611 as yet unmatched pairs. 17678 records in RAM.
INFO 2026-06-08 09:08:07 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 1s. Last read position: chr17:75,730,343
INFO 2026-06-08 09:08:07 MarkDuplicates Tracking 204784 as yet unmatched pairs. 16851 records in RAM.
INFO 2026-06-08 09:08:09 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr17:75,875,063
INFO 2026-06-08 09:08:09 MarkDuplicates Tracking 202142 as yet unmatched pairs. 14205 records in RAM.
INFO 2026-06-08 09:08:10 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 1s. Last read position: chr17:76,738,124
INFO 2026-06-08 09:08:10 MarkDuplicates Tracking 199627 as yet unmatched pairs. 11690 records in RAM.
INFO 2026-06-08 09:08:12 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr17:78,870,998
INFO 2026-06-08 09:08:12 MarkDuplicates Tracking 198481 as yet unmatched pairs. 10544 records in RAM.
INFO 2026-06-08 09:08:13 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr17:80,288,004
INFO 2026-06-08 09:08:13 MarkDuplicates Tracking 197812 as yet unmatched pairs. 9875 records in RAM.
INFO 2026-06-08 09:08:15 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chr17:81,260,362
INFO 2026-06-08 09:08:15 MarkDuplicates Tracking 194959 as yet unmatched pairs. 7022 records in RAM.
INFO 2026-06-08 09:08:17 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 2s. Last read position: chr17:81,824,325
INFO 2026-06-08 09:08:17 MarkDuplicates Tracking 193172 as yet unmatched pairs. 5234 records in RAM.
INFO 2026-06-08 09:08:19 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr17:82,051,324
INFO 2026-06-08 09:08:19 MarkDuplicates Tracking 191494 as yet unmatched pairs. 3556 records in RAM.
INFO 2026-06-08 09:08:21 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 1s. Last read position: chr17:82,236,791
INFO 2026-06-08 09:08:21 MarkDuplicates Tracking 189985 as yet unmatched pairs. 2047 records in RAM.
INFO 2026-06-08 09:08:23 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 2s. Last read position: chr18:2,913,251
INFO 2026-06-08 09:08:23 MarkDuplicates Tracking 187745 as yet unmatched pairs. 9112 records in RAM.
INFO 2026-06-08 09:08:25 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 2s. Last read position: chr18:9,524,650
INFO 2026-06-08 09:08:25 MarkDuplicates Tracking 186963 as yet unmatched pairs. 8330 records in RAM.
INFO 2026-06-08 09:08:27 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr18:23,873,067
INFO 2026-06-08 09:08:27 MarkDuplicates Tracking 184786 as yet unmatched pairs. 6153 records in RAM.
INFO 2026-06-08 09:08:28 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr18:36,818,871
INFO 2026-06-08 09:08:28 MarkDuplicates Tracking 184007 as yet unmatched pairs. 5374 records in RAM.
INFO 2026-06-08 09:08:30 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr18:49,863,256
INFO 2026-06-08 09:08:30 MarkDuplicates Tracking 182059 as yet unmatched pairs. 3426 records in RAM.
INFO 2026-06-08 09:08:31 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr18:62,084,528
INFO 2026-06-08 09:08:31 MarkDuplicates Tracking 180999 as yet unmatched pairs. 2366 records in RAM.
INFO 2026-06-08 09:08:33 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr18:80,034,554
INFO 2026-06-08 09:08:33 MarkDuplicates Tracking 179039 as yet unmatched pairs. 406 records in RAM.
INFO 2026-06-08 09:08:35 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 2s. Last read position: chr19:804,898
INFO 2026-06-08 09:08:35 MarkDuplicates Tracking 178031 as yet unmatched pairs. 81220 records in RAM.
INFO 2026-06-08 09:08:36 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr19:1,106,610
INFO 2026-06-08 09:08:36 MarkDuplicates Tracking 180855 as yet unmatched pairs. 84044 records in RAM.
INFO 2026-06-08 09:08:39 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 2s. Last read position: chr19:1,507,522
INFO 2026-06-08 09:08:39 MarkDuplicates Tracking 173423 as yet unmatched pairs. 76611 records in RAM.
INFO 2026-06-08 09:08:40 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr19:1,990,808
INFO 2026-06-08 09:08:40 MarkDuplicates Tracking 171526 as yet unmatched pairs. 74714 records in RAM.
INFO 2026-06-08 09:08:42 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr19:2,476,616
INFO 2026-06-08 09:08:42 MarkDuplicates Tracking 170460 as yet unmatched pairs. 73647 records in RAM.
INFO 2026-06-08 09:08:43 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr19:3,984,151
INFO 2026-06-08 09:08:43 MarkDuplicates Tracking 170112 as yet unmatched pairs. 73299 records in RAM.
INFO 2026-06-08 09:08:45 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr19:4,694,667
INFO 2026-06-08 09:08:45 MarkDuplicates Tracking 165961 as yet unmatched pairs. 69147 records in RAM.
INFO 2026-06-08 09:08:47 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr19:5,914,241
INFO 2026-06-08 09:08:47 MarkDuplicates Tracking 164484 as yet unmatched pairs. 67668 records in RAM.
INFO 2026-06-08 09:08:49 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 2s. Last read position: chr19:6,752,722
INFO 2026-06-08 09:08:49 MarkDuplicates Tracking 162659 as yet unmatched pairs. 65843 records in RAM.
INFO 2026-06-08 09:08:52 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 2s. Last read position: chr19:8,302,417
INFO 2026-06-08 09:08:52 MarkDuplicates Tracking 160508 as yet unmatched pairs. 63692 records in RAM.
INFO 2026-06-08 09:08:53 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr19:10,118,902
INFO 2026-06-08 09:08:53 MarkDuplicates Tracking 159230 as yet unmatched pairs. 62414 records in RAM.
INFO 2026-06-08 09:08:55 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr19:10,671,424
INFO 2026-06-08 09:08:55 MarkDuplicates Tracking 157615 as yet unmatched pairs. 60799 records in RAM.
INFO 2026-06-08 09:08:56 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr19:11,193,830
INFO 2026-06-08 09:08:56 MarkDuplicates Tracking 155791 as yet unmatched pairs. 58971 records in RAM.
INFO 2026-06-08 09:08:58 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr19:12,680,232
INFO 2026-06-08 09:08:58 MarkDuplicates Tracking 153971 as yet unmatched pairs. 57148 records in RAM.
INFO 2026-06-08 09:08:59 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr19:12,952,974
INFO 2026-06-08 09:08:59 MarkDuplicates Tracking 151972 as yet unmatched pairs. 55146 records in RAM.
INFO 2026-06-08 09:09:01 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr19:14,409,060
INFO 2026-06-08 09:09:01 MarkDuplicates Tracking 150254 as yet unmatched pairs. 53428 records in RAM.
INFO 2026-06-08 09:09:02 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr19:15,161,191
INFO 2026-06-08 09:09:02 MarkDuplicates Tracking 151476 as yet unmatched pairs. 54646 records in RAM.
INFO 2026-06-08 09:09:04 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr19:15,189,314
INFO 2026-06-08 09:09:04 MarkDuplicates Tracking 149041 as yet unmatched pairs. 52211 records in RAM.
INFO 2026-06-08 09:09:06 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr19:15,427,232
INFO 2026-06-08 09:09:06 MarkDuplicates Tracking 145291 as yet unmatched pairs. 48455 records in RAM.
INFO 2026-06-08 09:09:07 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr19:17,232,456
INFO 2026-06-08 09:09:07 MarkDuplicates Tracking 145432 as yet unmatched pairs. 48590 records in RAM.
INFO 2026-06-08 09:09:09 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr19:17,942,672
INFO 2026-06-08 09:09:09 MarkDuplicates Tracking 141105 as yet unmatched pairs. 44263 records in RAM.
INFO 2026-06-08 09:09:10 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr19:18,433,586
INFO 2026-06-08 09:09:10 MarkDuplicates Tracking 140057 as yet unmatched pairs. 43215 records in RAM.
INFO 2026-06-08 09:09:12 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr19:18,931,351
INFO 2026-06-08 09:09:12 MarkDuplicates Tracking 138460 as yet unmatched pairs. 41618 records in RAM.
INFO 2026-06-08 09:09:14 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 2s. Last read position: chr19:24,213,833
INFO 2026-06-08 09:09:14 MarkDuplicates Tracking 135439 as yet unmatched pairs. 38596 records in RAM.
INFO 2026-06-08 09:09:16 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr19:35,015,827
INFO 2026-06-08 09:09:16 MarkDuplicates Tracking 134447 as yet unmatched pairs. 37602 records in RAM.
INFO 2026-06-08 09:09:18 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr19:35,720,802
INFO 2026-06-08 09:09:18 MarkDuplicates Tracking 132322 as yet unmatched pairs. 35477 records in RAM.
INFO 2026-06-08 09:09:19 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr19:38,206,102
INFO 2026-06-08 09:09:19 MarkDuplicates Tracking 130686 as yet unmatched pairs. 33835 records in RAM.
INFO 2026-06-08 09:09:21 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr19:38,817,486
INFO 2026-06-08 09:09:21 MarkDuplicates Tracking 129746 as yet unmatched pairs. 32895 records in RAM.
INFO 2026-06-08 09:09:22 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr19:39,423,957
INFO 2026-06-08 09:09:22 MarkDuplicates Tracking 127499 as yet unmatched pairs. 30648 records in RAM.
INFO 2026-06-08 09:09:24 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr19:40,233,770
INFO 2026-06-08 09:09:24 MarkDuplicates Tracking 126347 as yet unmatched pairs. 29496 records in RAM.
INFO 2026-06-08 09:09:26 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr19:40,801,180
INFO 2026-06-08 09:09:26 MarkDuplicates Tracking 124624 as yet unmatched pairs. 27769 records in RAM.
INFO 2026-06-08 09:09:27 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr19:42,225,203
INFO 2026-06-08 09:09:27 MarkDuplicates Tracking 122406 as yet unmatched pairs. 25551 records in RAM.
INFO 2026-06-08 09:09:29 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr19:42,293,644
INFO 2026-06-08 09:09:29 MarkDuplicates Tracking 122506 as yet unmatched pairs. 25651 records in RAM.
INFO 2026-06-08 09:09:30 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr19:43,797,695
INFO 2026-06-08 09:09:30 MarkDuplicates Tracking 118494 as yet unmatched pairs. 21635 records in RAM.
INFO 2026-06-08 09:09:32 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr19:45,395,650
INFO 2026-06-08 09:09:32 MarkDuplicates Tracking 117710 as yet unmatched pairs. 20851 records in RAM.
INFO 2026-06-08 09:09:33 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr19:45,885,326
INFO 2026-06-08 09:09:33 MarkDuplicates Tracking 115118 as yet unmatched pairs. 18259 records in RAM.
INFO 2026-06-08 09:09:34 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr19:47,375,540
INFO 2026-06-08 09:09:34 MarkDuplicates Tracking 113148 as yet unmatched pairs. 16289 records in RAM.
INFO 2026-06-08 09:09:36 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 2s. Last read position: chr19:48,628,874
INFO 2026-06-08 09:09:36 MarkDuplicates Tracking 111537 as yet unmatched pairs. 14678 records in RAM.
INFO 2026-06-08 09:09:38 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr19:49,459,758
INFO 2026-06-08 09:09:38 MarkDuplicates Tracking 110357 as yet unmatched pairs. 13498 records in RAM.
INFO 2026-06-08 09:09:40 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 2s. Last read position: chr19:49,651,238
INFO 2026-06-08 09:09:40 MarkDuplicates Tracking 108856 as yet unmatched pairs. 11993 records in RAM.
INFO 2026-06-08 09:09:42 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr19:49,909,000
INFO 2026-06-08 09:09:42 MarkDuplicates Tracking 106828 as yet unmatched pairs. 9965 records in RAM.
INFO 2026-06-08 09:09:44 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr19:52,002,214
INFO 2026-06-08 09:09:44 MarkDuplicates Tracking 104557 as yet unmatched pairs. 7690 records in RAM.
INFO 2026-06-08 09:09:45 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr19:54,178,833
INFO 2026-06-08 09:09:45 MarkDuplicates Tracking 105016 as yet unmatched pairs. 8149 records in RAM.
INFO 2026-06-08 09:09:47 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr19:55,236,955
INFO 2026-06-08 09:09:47 MarkDuplicates Tracking 102289 as yet unmatched pairs. 5418 records in RAM.
INFO 2026-06-08 09:09:49 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 2s. Last read position: chr19:55,688,940
INFO 2026-06-08 09:09:49 MarkDuplicates Tracking 100541 as yet unmatched pairs. 3670 records in RAM.
INFO 2026-06-08 09:09:50 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr19:58,388,157
INFO 2026-06-08 09:09:50 MarkDuplicates Tracking 107641 as yet unmatched pairs. 10769 records in RAM.
INFO 2026-06-08 09:09:52 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr20:1,164,360
INFO 2026-06-08 09:09:52 MarkDuplicates Tracking 96620 as yet unmatched pairs. 24659 records in RAM.
INFO 2026-06-08 09:09:54 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr20:3,785,429
INFO 2026-06-08 09:09:54 MarkDuplicates Tracking 95864 as yet unmatched pairs. 23903 records in RAM.
INFO 2026-06-08 09:09:56 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr20:16,406,447
INFO 2026-06-08 09:09:56 MarkDuplicates Tracking 93051 as yet unmatched pairs. 21090 records in RAM.
INFO 2026-06-08 09:09:57 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr20:23,085,599
INFO 2026-06-08 09:09:57 MarkDuplicates Tracking 91726 as yet unmatched pairs. 19760 records in RAM.
INFO 2026-06-08 09:09:59 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr20:31,605,473
INFO 2026-06-08 09:09:59 MarkDuplicates Tracking 94035 as yet unmatched pairs. 22068 records in RAM.
INFO 2026-06-08 09:10:01 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr20:34,657,180
INFO 2026-06-08 09:10:01 MarkDuplicates Tracking 88746 as yet unmatched pairs. 16779 records in RAM.
INFO 2026-06-08 09:10:03 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 2s. Last read position: chr20:35,954,106
INFO 2026-06-08 09:10:03 MarkDuplicates Tracking 88897 as yet unmatched pairs. 16929 records in RAM.
INFO 2026-06-08 09:10:04 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr20:38,138,193
INFO 2026-06-08 09:10:04 MarkDuplicates Tracking 85945 as yet unmatched pairs. 13977 records in RAM.
INFO 2026-06-08 09:10:06 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr20:44,512,974
INFO 2026-06-08 09:10:06 MarkDuplicates Tracking 84425 as yet unmatched pairs. 12451 records in RAM.
INFO 2026-06-08 09:10:07 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr20:45,899,004
INFO 2026-06-08 09:10:07 MarkDuplicates Tracking 83847 as yet unmatched pairs. 11873 records in RAM.
INFO 2026-06-08 09:10:09 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr20:49,270,286
INFO 2026-06-08 09:10:09 MarkDuplicates Tracking 81010 as yet unmatched pairs. 9036 records in RAM.
INFO 2026-06-08 09:10:10 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr20:56,398,977
INFO 2026-06-08 09:10:10 MarkDuplicates Tracking 79190 as yet unmatched pairs. 7216 records in RAM.
INFO 2026-06-08 09:10:12 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr20:62,064,652
INFO 2026-06-08 09:10:12 MarkDuplicates Tracking 77335 as yet unmatched pairs. 5361 records in RAM.
INFO 2026-06-08 09:10:14 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr20:62,338,023
INFO 2026-06-08 09:10:14 MarkDuplicates Tracking 77188 as yet unmatched pairs. 5214 records in RAM.
INFO 2026-06-08 09:10:15 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr20:63,561,122
INFO 2026-06-08 09:10:15 MarkDuplicates Tracking 74080 as yet unmatched pairs. 2106 records in RAM.
INFO 2026-06-08 09:10:17 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr21:6,117,178
INFO 2026-06-08 09:10:17 MarkDuplicates Tracking 72002 as yet unmatched pairs. 13027 records in RAM.
INFO 2026-06-08 09:10:18 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,285
INFO 2026-06-08 09:10:18 MarkDuplicates Tracking 71779 as yet unmatched pairs. 12799 records in RAM.
INFO 2026-06-08 09:10:20 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr21:25,975,194
INFO 2026-06-08 09:10:20 MarkDuplicates Tracking 71494 as yet unmatched pairs. 12513 records in RAM.
INFO 2026-06-08 09:10:21 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr21:33,345,299
INFO 2026-06-08 09:10:21 MarkDuplicates Tracking 68304 as yet unmatched pairs. 9320 records in RAM.
INFO 2026-06-08 09:10:23 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr21:37,140,573
INFO 2026-06-08 09:10:23 MarkDuplicates Tracking 66488 as yet unmatched pairs. 7504 records in RAM.
INFO 2026-06-08 09:10:24 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr21:43,062,325
INFO 2026-06-08 09:10:24 MarkDuplicates Tracking 64556 as yet unmatched pairs. 5566 records in RAM.
INFO 2026-06-08 09:10:26 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr21:44,326,013
INFO 2026-06-08 09:10:26 MarkDuplicates Tracking 64351 as yet unmatched pairs. 5361 records in RAM.
INFO 2026-06-08 09:10:27 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr21:45,510,084
INFO 2026-06-08 09:10:27 MarkDuplicates Tracking 65075 as yet unmatched pairs. 6085 records in RAM.
INFO 2026-06-08 09:10:29 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr21:46,324,230
INFO 2026-06-08 09:10:29 MarkDuplicates Tracking 59433 as yet unmatched pairs. 443 records in RAM.
INFO 2026-06-08 09:10:30 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr22:19,941,711
INFO 2026-06-08 09:10:30 MarkDuplicates Tracking 58433 as yet unmatched pairs. 30424 records in RAM.
INFO 2026-06-08 09:10:32 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr22:21,621,713
INFO 2026-06-08 09:10:32 MarkDuplicates Tracking 55991 as yet unmatched pairs. 27982 records in RAM.
INFO 2026-06-08 09:10:34 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr22:23,781,399
INFO 2026-06-08 09:10:34 MarkDuplicates Tracking 56953 as yet unmatched pairs. 28944 records in RAM.
INFO 2026-06-08 09:10:35 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr22:26,472,373
INFO 2026-06-08 09:10:35 MarkDuplicates Tracking 52362 as yet unmatched pairs. 24353 records in RAM.
INFO 2026-06-08 09:10:37 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr22:29,328,697
INFO 2026-06-08 09:10:37 MarkDuplicates Tracking 51801 as yet unmatched pairs. 23792 records in RAM.
INFO 2026-06-08 09:10:38 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr22:31,248,724
INFO 2026-06-08 09:10:38 MarkDuplicates Tracking 49782 as yet unmatched pairs. 21773 records in RAM.
INFO 2026-06-08 09:10:40 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr22:36,145,549
INFO 2026-06-08 09:10:40 MarkDuplicates Tracking 47732 as yet unmatched pairs. 19723 records in RAM.
INFO 2026-06-08 09:10:42 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr22:36,288,925
INFO 2026-06-08 09:10:42 MarkDuplicates Tracking 47546 as yet unmatched pairs. 19537 records in RAM.
INFO 2026-06-08 09:10:44 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr22:36,348,930
INFO 2026-06-08 09:10:44 MarkDuplicates Tracking 47210 as yet unmatched pairs. 19201 records in RAM.
INFO 2026-06-08 09:10:45 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr22:37,759,193
INFO 2026-06-08 09:10:45 MarkDuplicates Tracking 44987 as yet unmatched pairs. 16978 records in RAM.
INFO 2026-06-08 09:10:47 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr22:38,671,102
INFO 2026-06-08 09:10:47 MarkDuplicates Tracking 41198 as yet unmatched pairs. 13189 records in RAM.
INFO 2026-06-08 09:10:48 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr22:39,995,427
INFO 2026-06-08 09:10:48 MarkDuplicates Tracking 39714 as yet unmatched pairs. 11705 records in RAM.
INFO 2026-06-08 09:10:50 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr22:41,357,385
INFO 2026-06-08 09:10:50 MarkDuplicates Tracking 37944 as yet unmatched pairs. 9935 records in RAM.
INFO 2026-06-08 09:10:51 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chr22:42,623,797
INFO 2026-06-08 09:10:51 MarkDuplicates Tracking 39993 as yet unmatched pairs. 11984 records in RAM.
INFO 2026-06-08 09:10:53 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr22:45,531,314
INFO 2026-06-08 09:10:53 MarkDuplicates Tracking 38973 as yet unmatched pairs. 10964 records in RAM.
INFO 2026-06-08 09:10:54 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr22:46,534,176
INFO 2026-06-08 09:10:54 MarkDuplicates Tracking 33434 as yet unmatched pairs. 5425 records in RAM.
INFO 2026-06-08 09:10:56 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr22:50,280,947
INFO 2026-06-08 09:10:56 MarkDuplicates Tracking 32590 as yet unmatched pairs. 4581 records in RAM.
INFO 2026-06-08 09:10:57 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr22:50,516,487
INFO 2026-06-08 09:10:57 MarkDuplicates Tracking 29191 as yet unmatched pairs. 1182 records in RAM.
INFO 2026-06-08 09:10:59 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chrX:2,740,871
INFO 2026-06-08 09:10:59 MarkDuplicates Tracking 28152 as yet unmatched pairs. 25646 records in RAM.
INFO 2026-06-08 09:11:00 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chrX:12,976,284
INFO 2026-06-08 09:11:00 MarkDuplicates Tracking 33553 as yet unmatched pairs. 31047 records in RAM.
INFO 2026-06-08 09:11:02 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chrX:34,656,880
INFO 2026-06-08 09:11:02 MarkDuplicates Tracking 24495 as yet unmatched pairs. 21989 records in RAM.
INFO 2026-06-08 09:11:04 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chrX:44,542,010
INFO 2026-06-08 09:11:04 MarkDuplicates Tracking 22765 as yet unmatched pairs. 20259 records in RAM.
INFO 2026-06-08 09:11:06 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chrX:47,585,203
INFO 2026-06-08 09:11:06 MarkDuplicates Tracking 22927 as yet unmatched pairs. 20421 records in RAM.
INFO 2026-06-08 09:11:07 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chrX:49,040,455
INFO 2026-06-08 09:11:07 MarkDuplicates Tracking 21196 as yet unmatched pairs. 18690 records in RAM.
INFO 2026-06-08 09:11:09 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chrX:53,542,472
INFO 2026-06-08 09:11:09 MarkDuplicates Tracking 18724 as yet unmatched pairs. 16217 records in RAM.
INFO 2026-06-08 09:11:11 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chrX:64,331,569
INFO 2026-06-08 09:11:11 MarkDuplicates Tracking 16604 as yet unmatched pairs. 14097 records in RAM.
INFO 2026-06-08 09:11:12 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chrX:71,567,996
INFO 2026-06-08 09:11:12 MarkDuplicates Tracking 15727 as yet unmatched pairs. 13220 records in RAM.
INFO 2026-06-08 09:11:14 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chrX:81,202,212
INFO 2026-06-08 09:11:14 MarkDuplicates Tracking 15097 as yet unmatched pairs. 12590 records in RAM.
INFO 2026-06-08 09:11:16 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chrX:108,626,242
INFO 2026-06-08 09:11:16 MarkDuplicates Tracking 13129 as yet unmatched pairs. 10622 records in RAM.
INFO 2026-06-08 09:11:17 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chrX:124,051,317
INFO 2026-06-08 09:11:17 MarkDuplicates Tracking 11657 as yet unmatched pairs. 9150 records in RAM.
INFO 2026-06-08 09:11:20 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 2s. Last read position: chrX:149,490,331
INFO 2026-06-08 09:11:20 MarkDuplicates Tracking 11514 as yet unmatched pairs. 9006 records in RAM.
INFO 2026-06-08 09:11:21 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chrX:153,693,464
INFO 2026-06-08 09:11:21 MarkDuplicates Tracking 11435 as yet unmatched pairs. 8927 records in RAM.
INFO 2026-06-08 09:11:23 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chrX:153,954,736
INFO 2026-06-08 09:11:23 MarkDuplicates Tracking 7412 as yet unmatched pairs. 4901 records in RAM.
INFO 2026-06-08 09:11:25 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chrX:154,359,055
INFO 2026-06-08 09:11:25 MarkDuplicates Tracking 8264 as yet unmatched pairs. 5753 records in RAM.
INFO 2026-06-08 09:11:26 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chrX:154,371,057
INFO 2026-06-08 09:11:26 MarkDuplicates Tracking 5851 as yet unmatched pairs. 3340 records in RAM.
INFO 2026-06-08 09:11:28 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chrX:156,009,995
INFO 2026-06-08 09:11:28 MarkDuplicates Tracking 2737 as yet unmatched pairs. 226 records in RAM.
INFO 2026-06-08 09:11:29 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: GL000220.1:160,856
INFO 2026-06-08 09:11:29 MarkDuplicates Tracking 1824 as yet unmatched pairs. 0 records in RAM.
INFO 2026-06-08 09:11:30 MarkDuplicates Read 623865383 records. 0 pairs never matched.
INFO 2026-06-08 09:12:17 MarkDuplicates After buildSortedReadEndLists freeMemory: 204142576; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:12:17 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:12:21 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:12:21 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:12:27 OpticalDuplicateFinder Large duplicate set. size = 1306
INFO 2026-06-08 09:12:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,564
INFO 2026-06-08 09:12:27 OpticalDuplicateFinder Large duplicate set. size = 1040
INFO 2026-06-08 09:12:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,916
INFO 2026-06-08 09:14:06 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:14:06 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:15:11 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:15:19 MarkDuplicates After generateDuplicateIndexes freeMemory: 204000800; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:15:19 MarkDuplicates Marking 418790574 records as duplicates.
INFO 2026-06-08 09:15:19 MarkDuplicates Found 17345596 optical duplicate clusters.
INFO 2026-06-08 09:15:19 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:15:37 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:17,697,151
INFO 2026-06-08 09:15:55 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:35s. Time for last 10,000,000: 18s. Last read position: chr1:33,334,189
INFO 2026-06-08 09:16:13 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:53s. Time for last 10,000,000: 17s. Last read position: chr1:77,631,990
INFO 2026-06-08 09:16:30 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:10s. Time for last 10,000,000: 17s. Last read position: chr1:144,054,609
INFO 2026-06-08 09:16:47 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:27s. Time for last 10,000,000: 17s. Last read position: chr1:156,309,222
INFO 2026-06-08 09:17:05 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:45s. Time for last 10,000,000: 17s. Last read position: chr1:209,623,056
INFO 2026-06-08 09:17:22 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:02s. Time for last 10,000,000: 17s. Last read position: chr2:26,034,728
INFO 2026-06-08 09:17:39 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:19s. Time for last 10,000,000: 17s. Last read position: chr2:61,031,771
INFO 2026-06-08 09:17:57 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:37s. Time for last 10,000,000: 18s. Last read position: chr2:113,244,572
INFO 2026-06-08 09:18:15 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:55s. Time for last 10,000,000: 17s. Last read position: chr2:207,124,281
INFO 2026-06-08 09:18:34 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:14s. Time for last 10,000,000: 18s. Last read position: chr2:237,354,903
INFO 2026-06-08 09:18:51 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:31s. Time for last 10,000,000: 17s. Last read position: chr3:47,686,103
INFO 2026-06-08 09:19:11 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:51s. Time for last 10,000,000: 19s. Last read position: chr3:100,547,567
INFO 2026-06-08 09:19:30 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:10s. Time for last 10,000,000: 18s. Last read position: chr3:184,326,950
INFO 2026-06-08 09:19:48 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:28s. Time for last 10,000,000: 17s. Last read position: chr4:30,723,504
INFO 2026-06-08 09:20:08 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:48s. Time for last 10,000,000: 20s. Last read position: chr4:169,401,787
INFO 2026-06-08 09:20:25 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:05:05s. Time for last 10,000,000: 17s. Last read position: chr5:96,781,712
INFO 2026-06-08 09:20:43 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:23s. Time for last 10,000,000: 17s. Last read position: chr5:150,412,630
INFO 2026-06-08 09:21:00 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:40s. Time for last 10,000,000: 17s. Last read position: chr6:7,580,998
INFO 2026-06-08 09:21:18 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:58s. Time for last 10,000,000: 17s. Last read position: chr6:32,949,801
INFO 2026-06-08 09:21:35 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:15s. Time for last 10,000,000: 17s. Last read position: chr6:96,549,500
INFO 2026-06-08 09:21:53 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:33s. Time for last 10,000,000: 17s. Last read position: chr7:5,528,569
INFO 2026-06-08 09:22:10 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:50s. Time for last 10,000,000: 17s. Last read position: chr7:75,192,976
INFO 2026-06-08 09:22:28 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:08s. Time for last 10,000,000: 17s. Last read position: chr7:113,117,320
INFO 2026-06-08 09:22:45 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:25s. Time for last 10,000,000: 17s. Last read position: chr8:22,607,194
INFO 2026-06-08 09:23:03 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:43s. Time for last 10,000,000: 17s. Last read position: chr8:107,251,958
INFO 2026-06-08 09:23:20 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:08:00s. Time for last 10,000,000: 17s. Last read position: chr8:143,922,151
INFO 2026-06-08 09:23:38 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:18s. Time for last 10,000,000: 17s. Last read position: chr9:110,479,667
INFO 2026-06-08 09:23:56 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:36s. Time for last 10,000,000: 18s. Last read position: chr10:4,995,454
INFO 2026-06-08 09:24:14 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:54s. Time for last 10,000,000: 17s. Last read position: chr10:74,070,701
INFO 2026-06-08 09:24:31 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:11s. Time for last 10,000,000: 17s. Last read position: chr11:810,287
INFO 2026-06-08 09:24:50 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:30s. Time for last 10,000,000: 18s. Last read position: chr11:62,337,973
INFO 2026-06-08 09:25:07 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:47s. Time for last 10,000,000: 17s. Last read position: chr11:67,399,113
INFO 2026-06-08 09:25:25 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:10:05s. Time for last 10,000,000: 17s. Last read position: chr11:119,055,554
INFO 2026-06-08 09:25:42 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:22s. Time for last 10,000,000: 17s. Last read position: chr12:14,542,207
INFO 2026-06-08 09:25:59 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:39s. Time for last 10,000,000: 17s. Last read position: chr12:55,819,138
INFO 2026-06-08 09:26:17 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:57s. Time for last 10,000,000: 17s. Last read position: chr12:109,456,200
INFO 2026-06-08 09:26:35 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:15s. Time for last 10,000,000: 17s. Last read position: chr13:37,587,887
INFO 2026-06-08 09:26:52 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:32s. Time for last 10,000,000: 17s. Last read position: chr14:23,093,523
INFO 2026-06-08 09:27:10 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:50s. Time for last 10,000,000: 17s. Last read position: chr14:75,279,981
INFO 2026-06-08 09:27:27 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:12:07s. Time for last 10,000,000: 17s. Last read position: chr15:34,341,916
INFO 2026-06-08 09:27:45 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:25s. Time for last 10,000,000: 17s. Last read position: chr15:73,283,013
INFO 2026-06-08 09:28:02 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:42s. Time for last 10,000,000: 17s. Last read position: chr16:1,985,904
INFO 2026-06-08 09:28:20 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:13:00s. Time for last 10,000,000: 17s. Last read position: chr16:27,363,053
INFO 2026-06-08 09:28:37 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:17s. Time for last 10,000,000: 17s. Last read position: chr16:58,551,771
INFO 2026-06-08 09:28:54 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:34s. Time for last 10,000,000: 17s. Last read position: chr17:1,361,177
INFO 2026-06-08 09:29:12 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:52s. Time for last 10,000,000: 17s. Last read position: chr17:35,809,503
INFO 2026-06-08 09:29:29 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:14:09s. Time for last 10,000,000: 17s. Last read position: chr17:44,351,669
INFO 2026-06-08 09:29:48 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:28s. Time for last 10,000,000: 18s. Last read position: chr17:50,194,791
INFO 2026-06-08 09:30:07 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:47s. Time for last 10,000,000: 18s. Last read position: chr17:75,040,144
INFO 2026-06-08 09:30:24 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:15:04s. Time for last 10,000,000: 17s. Last read position: chr18:2,913,251
INFO 2026-06-08 09:30:41 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:15:21s. Time for last 10,000,000: 17s. Last read position: chr19:1,990,808
INFO 2026-06-08 09:30:59 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:39s. Time for last 10,000,000: 17s. Last read position: chr19:12,680,232
INFO 2026-06-08 09:31:16 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:56s. Time for last 10,000,000: 17s. Last read position: chr19:24,213,833
INFO 2026-06-08 09:31:33 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:16:13s. Time for last 10,000,000: 17s. Last read position: chr19:43,797,695
INFO 2026-06-08 09:31:51 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:31s. Time for last 10,000,000: 17s. Last read position: chr19:55,236,955
INFO 2026-06-08 09:32:08 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:48s. Time for last 10,000,000: 17s. Last read position: chr20:38,138,193
INFO 2026-06-08 09:32:25 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:17:05s. Time for last 10,000,000: 17s. Last read position: chr21:25,975,194
INFO 2026-06-08 09:32:43 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:17:23s. Time for last 10,000,000: 17s. Last read position: chr22:26,472,373
INFO 2026-06-08 09:33:00 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:40s. Time for last 10,000,000: 17s. Last read position: chr22:42,623,797
INFO 2026-06-08 09:33:17 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:57s. Time for last 10,000,000: 17s. Last read position: chrX:49,040,455
INFO 2026-06-08 09:33:35 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:18:15s. Time for last 10,000,000: 17s. Last read position: chrX:154,359,055
INFO 2026-06-08 09:33:47 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:33:47 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:33:47 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:33:47 MarkDuplicates Before output close freeMemory: 203962632; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:33:47 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:33:48 MarkDuplicates After output close freeMemory: 104205176; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:33:48 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 43.41 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory