Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/8b447bb907003529e096d5a5e447a6/659_bUW-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/e954cb6f1c7fb6444b384982367a34/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/50de7b524cd8de5d5626bf6ab3bf5c/659_bUW-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/e954cb6f1c7fb6444b384982367a34/.command.run
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bUW-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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