File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/60e6c03f85da40ea88d55c0f054fa9/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 08:09:52
                             Started mapping on |	Jun 08 08:16:31
                                    Finished on |	Jun 08 08:32:55
       Mapping speed, Million of reads per hour |	246.83

                          Number of input reads |	67466119
                      Average input read length |	232
                                    UNIQUE READS:
                   Uniquely mapped reads number |	63762385
                        Uniquely mapped reads % |	94.51%
                          Average mapped length |	231.41
                       Number of splices: Total |	56004033
            Number of splices: Annotated (sjdb) |	55031148
                       Number of splices: GT/AG |	55244372
                       Number of splices: GC/AG |	407146
                       Number of splices: AT/AC |	30413
               Number of splices: Non-canonical |	322102
                      Mismatch rate per base, % |	0.31%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.17
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.75
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	2835758
             % of reads mapped to multiple loci |	4.20%
        Number of reads mapped to too many loci |	108373
             % of reads mapped to too many loci |	0.16%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	621259
                 % of reads unmapped: too short |	0.92%
                Number of reads unmapped: other |	138344
                     % of reads unmapped: other |	0.21%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%